View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17672_low_1 (Length: 768)

Name: NF17672_low_1
Description: NF17672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17672_low_1
NF17672_low_1
[»] chr6 (12 HSPs)
chr6 (131-753)||(9640381-9641001)
chr6 (18-134)||(9641259-9641375)
chr6 (219-362)||(9657517-9657660)
chr6 (216-362)||(9617617-9617763)
chr6 (216-357)||(9632372-9632513)
chr6 (633-750)||(9656673-9656790)
chr6 (28-121)||(9657836-9657929)
chr6 (491-708)||(9630561-9630795)
chr6 (490-594)||(9656828-9656933)
chr6 (491-582)||(9616157-9616248)
chr6 (633-750)||(9615972-9616089)
chr6 (24-124)||(9632595-9632695)
[»] chr7 (1 HSPs)
chr7 (520-581)||(33643101-33643162)


Alignment Details
Target: chr6 (Bit Score: 462; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 131 - 753
Target Start/End: Complemental strand, 9641001 - 9640381
Alignment:
Q  131 tctagcatattagattgtttgaatagcaagtaaagaatttctgctgtgactgttgaaatgagattaatttttctttgcttaagccgcacttattggagga 230  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||| ||| || |||||||||||||||    
T  9641001 tctagcatattagtttgtttgaatagcatgtaaagaatttctgctgtgagtgttgaaatgagattaatatttctttgattaggctgcacttattggagga 9640902  T
Q  231 gtggacaacttgccaagatttttatcctatcaacgtattcctgtgattggtattgatgtagacccactttcagcatttatggtattgattgttacatgga 330  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9640901 gtggacaacttgccaagatttttatcctatcaacgtattcctgggattgatattgatgtagacccactttcagcatttatggtattgattgttacttgga 9640802  T
Q  331 tcctatgtactggtatcaaggaggtaaattttatcgatgtttttacctcaagtcttctgcaccgctttttcgaagggattgtctgtatatgttctttatt 430  Q
    |||| |||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||    
T  9640801 tcctgtgtactggcatcaaggaggtaaattttatcgatctttttacctcaagtctgctgcaccgc-ttttcgaaggtattgtctgtatatgttctttatt 9640703  T
Q  431 gatttgaattattactactttgtatgcagagatcaaggatccaaactttagtgactcccgtgaatatttgtgtgttgatatttatcatcgtagctggtgg 530  Q
    |||||||||| ||||||||||||||||||||  ||||||| |||| | |||| ||  | |||||||| ||||  ||||| ||||||||||||||||||||    
T  9640702 gatttgaatttttactactttgtatgcagagtacaaggatacaaagtatagtcacatcagtgaatatatgtgctttgatgtttatcatcgtagctggtgg 9640603  T
Q  531 ttatttgggattcaaaactggatggattggatataaactccctacagggtaattttacatctttcttctacactacccttaatccgtttatgtttggtct 630  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9640602 ttatttgggattcaaaactggatggattggatataaactccctacagggtaa-tttacatctttcttctacactacccttaatccgtttatgtttggtct 9640504  T
Q  631 cttaatatttgtatcttgttttaataataggtattttgcatttggagtagatggaatggttgctggttctgcaacagcnnnnnnngcatacattggtttt 730  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||| ||||||    
T  9640503 cttaatatttgtatcttgttttaataataggtattttgcatttggagtagatggaatggttgctggttctgcaacagctttttttgcatacataggtttt 9640404  T
Q  731 gatgctgttgccagcgctgctga 753  Q
    ||||| |||||||||||||||||    
T  9640403 gatgcagttgccagcgctgctga 9640381  T

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Target: chr6; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 9641375 - 9641259
Alignment:
Q  18 tgtataatgtttgcagggtttcttggttgattggttggtccttaatattggaatatggtgttggtggagctgctgtcgctcgtggcattacccctaattt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9641375 tgtataatgtttgcagggtttcttggttgattggttggtccttaatattggaatatggtgttggtggagctgctgtcgctcgtggcattacccctaattt 9641276  T
Q  118 ggtatagtcttaatcta 134  Q
    |||||||||||||||||    
T  9641275 ggtatagtcttaatcta 9641259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 219 - 362
Target Start/End: Complemental strand, 9657660 - 9657517
Alignment:
Q  219 cttattggaggagtggacaacttgccaagatttttatcctatcaacgtattcctgtgattggtattgatgtagacccactttcagcatttatggtattga 318  Q
    ||||||||||| ||||| ||||||||| ||||||||||| |||||| |||||||| ||||| ||||| ||||||||||||||||||| ||||||| || |    
T  9657660 cttattggaggtgtggaaaacttgccaggatttttatccaatcaacatattcctgggattgatattgttgtagacccactttcagcaattatggtgttca 9657561  T
Q  319 ttgttacatggatcctatgtactggtatcaaggaggtaaatttt 362  Q
    |||| || |||||||| |||||||| ||||| ||||||||||||    
T  9657560 ttgtcacctggatcctgtgtactggaatcaaagaggtaaatttt 9657517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 216 - 362
Target Start/End: Complemental strand, 9617763 - 9617617
Alignment:
Q  216 gcacttattggaggagtggacaacttgccaagatttttatcctatcaacgtattcctgtgattggtattgatgtagacccactttcagcatttatggtat 315  Q
    ||||||||||||||  |||||||||||||| |||||||||| ||||||| |||||||| ||||| ||||| ||||||||||||| ||||| || ||||||    
T  9617763 gcacttattggaggtatggacaacttgccaggatttttatcatatcaacatattcctgggattgatattgttgtagacccacttgcagcaattgtggtat 9617664  T
Q  316 tgattgttacatggatcctatgtactggtatcaaggaggtaaatttt 362  Q
    | |||||||| |||||||||||||| || ||||| ||||||| ||||    
T  9617663 tcattgttacttggatcctatgtaccgggatcaaagaggtaactttt 9617617  T

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Target: chr6; HSP #5
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 216 - 357
Target Start/End: Complemental strand, 9632513 - 9632372
Alignment:
Q  216 gcacttattggaggagtggacaacttgccaagatttttatcctatcaacgtattcctgtgattggtattgatgtagacccactttcagcatttatggtat 315  Q
    ||||||||||||||  |||||||||||||| |||||||||| ||||||| ||| |||| ||||| ||||||||||||||||||| ||||| |||||||||    
T  9632513 gcacttattggaggtatggacaacttgccaggatttttatcatatcaacatatacctgggattgatattgatgtagacccacttgcagcaattatggtat 9632414  T
Q  316 tgattgttacatggatcctatgtactggtatcaaggaggtaa 357  Q
    | |||||||| |||||||| ||||| || ||||| |||||||    
T  9632413 tcattgttacttggatcctctgtacagggatcaaagaggtaa 9632372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 633 - 750
Target Start/End: Complemental strand, 9656790 - 9656673
Alignment:
Q  633 taatatttgtatcttgttttaataataggtattttgcatttggagtagatggaatggttgctggttctgcaacagcnnnnnnngcatacattggttttga 732  Q
    |||||||| | |||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  9656790 taatatttatctcttgttttaataataggtattttccttttggggtagatggaatggttgctggttctgcaacagctttttttgcatacattggttttga 9656691  T
Q  733 tgctgttgccagcgctgc 750  Q
    ||||||||||||| ||||    
T  9656690 tgctgttgccagcactgc 9656673  T

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Target: chr6; HSP #7
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 9657929 - 9657836
Alignment:
Q  28 ttgcagggtttcttggttgattggttggtccttaatattggaatatggtgttggtggagctgctgtcgctcgtggcattacccctaatttggta 121  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| |||||||||    
T  9657929 ttgcagggttgcttggttgataggttggtccttaatattggaatatggtattggtggagctgctgttgctcgtggcataacccccaatttggta 9657836  T

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Target: chr6; HSP #8
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 491 - 708
Target Start/End: Complemental strand, 9630795 - 9630561
Alignment:
Q  491 tgaatatttgtgtgttgatatttatcatcgtagctggtggttatttgggattcaaaactggatggattggatataaactccctacagggta-----attt 585  Q
    ||||||| ||||  ||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||     | |     
T  9630795 tgaatatatgtgctttgatgtttgtcatagtagctggtggttatttgggattcaaaactggatggattggatatgaactccctaaagggtaagcgtaatc 9630696  T
Q  586 tacatctttcttctacactacccttaatccgtttatgtttggtctct-------------taatatttgtatcttgttttaataataggtattttgcatt 672  Q
    ||||||||||||| |||| | || || | | | ||| ||| ||||||             ||||||||||||||||||||||| ||||||||||| ||||    
T  9630695 tacatctttcttcaacac-atccctactacatctatttttcgtctcttcaagttattgaataatatttgtatcttgttttaattataggtattttccatt 9630597  T
Q  673 tggagtagatggaatggttgctggttctgcaacagc 708  Q
    |||  ||||||||||||||||| |||||||||||||    
T  9630596 tgggatagatggaatggttgctagttctgcaacagc 9630561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 490 - 594
Target Start/End: Complemental strand, 9656933 - 9656828
Alignment:
Q  490 gtgaatatttgtgtgttgatatttatcatcgtagctggtggttatttgggattcaaaactggatggattggatataaactccctacagggtaa-ttttac 588  Q
    |||||||| ||||  || || |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  9656933 gtgaatatctgtgctttaatgtttatcatagtagctggtggttatttaggattcaaaactggatggattggatataaactcccaacagggtaacttttac 9656834  T
Q  589 atcttt 594  Q
    ||||||    
T  9656833 atcttt 9656828  T

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Target: chr6; HSP #10
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 491 - 582
Target Start/End: Complemental strand, 9616248 - 9616157
Alignment:
Q  491 tgaatatttgtgtgttgatatttatcatcgtagctggtggttatttgggattcaaaactggatggattggatataaactccctacagggtaa 582  Q
    ||||||| ||||  ||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||    
T  9616248 tgaatatatgtgctttgatgtttgtcatagtagctggtggttatttgggattcaaaactggatggattggatatgaacttcctaaagggtaa 9616157  T

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Target: chr6; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 633 - 750
Target Start/End: Complemental strand, 9616089 - 9615972
Alignment:
Q  633 taatatttgtatcttgttttaataataggtattttgcatttggagtagatggaatggttgctggttctgcaacagcnnnnnnngcatacattggttttga 732  Q
    |||||||| | || ||||||||| ||||||||||| ||||||| ||| |||||||||||||| |||||||||||||       |||||||| ||||||||    
T  9616089 taatatttatctcctgttttaattataggtattttccatttggggtaaatggaatggttgctagttctgcaacagccttttttgcatacataggttttga 9615990  T
Q  733 tgctgttgccagcgctgc 750  Q
     ||  |||||||| ||||    
T  9615989 agcaattgccagcactgc 9615972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 9632695 - 9632595
Alignment:
Q  24 atgtttgcagggtttcttggttgattggttggtccttaatattggaatatggtgttggtggagctgctgtcgctcgtggcattacccctaatttggtata 123  Q
    |||||||||||||| ||||||||||||| ||||||||||   |||||  ||  ||||| ||||||| ||| ||||||||||| ||||| |||||||||||    
T  9632695 atgtttgcagggttgcttggttgattggctggtccttaactctggaaactgtggttggcggagctgttgttgctcgtggcataaccccaaatttggtata 9632596  T
Q  124 g 124  Q
    |    
T  9632595 g 9632595  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 520 - 581
Target Start/End: Original strand, 33643101 - 33643162
Alignment:
Q  520 gtagctggtggttatttgggattcaaaactggatggattggatataaactccctacagggta 581  Q
    ||||||||||||||  ||||||||||  |||||||| |||||||| |||| ||||| |||||    
T  33643101 gtagctggtggttacatgggattcaagtctggatgggttggatatgaacttcctaccgggta 33643162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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