View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17672_low_12 (Length: 284)
Name: NF17672_low_12
Description: NF17672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17672_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 264
Target Start/End: Complemental strand, 47801531 - 47801279
Alignment:
| Q |
12 |
atgaaaagtggataagcattattaaatgcaattggaaaagaaaacatacttttacattccggaccattaatcaatgcaaccgaaccgataacagacagaa |
111 |
Q |
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| T |
47801531 |
atgaaaagtggataagcattattaaatgaaattggaaaagaaaacatacttttacattccggaccattaatcaatgcaaccgaatcgataacagacagaa |
47801432 |
T |
|
| Q |
112 |
gtaagccggagagtttagacgaatagaatagatacacgtgtccgatccaataaccataataccaacaacttcgttcttcttctcttatattataatcaaa |
211 |
Q |
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| T |
47801431 |
gtaagccggagagtttagacgaatagaatagatacacgtgtccgatccaataaccataataccaacaacttcgttcttcttctcttatattataatcaaa |
47801332 |
T |
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| Q |
212 |
gcttccttccaccattcccttctgcaaatgcttcaattcacagtaactcactc |
264 |
Q |
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||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47801331 |
gcttcgttcgaccattcccttctgcaaatgcttcaattcacagtaactcactc |
47801279 |
T |
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