View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17672_low_13 (Length: 282)
Name: NF17672_low_13
Description: NF17672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17672_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 46640391 - 46640147
Alignment:
| Q |
18 |
gaaaagagctaagtctgttaaaagaccaagttcttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgtaagga |
117 |
Q |
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| T |
46640391 |
gaaaagagctatgtctgttaaaagaccaagttcttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgtaagga |
46640292 |
T |
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| Q |
118 |
tcatctagtgacggtgcacaaaagatacctgtgtagttgcatacatttgggccataccagtttaaggtggtgttttttgggtctgaggtgaatgtttgtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46640291 |
tcatctagtgacggtgcacaaaagatacctgtgtagttgcatacatttgggccataccagtttaaggtggtgttttttgggtctgaggtgaatgtttgtt |
46640192 |
T |
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| Q |
218 |
tccatgcttggagtgctatgtaggctttggtgagtcttgggttta |
262 |
Q |
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| T |
46640191 |
tccatgcttggagtgctatgtaggctttggtgagtcttgggttta |
46640147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 46642683 - 46642439
Alignment:
| Q |
18 |
gaaaagagctaagtctgttaaaagaccaagttcttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgtaagga |
117 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642683 |
gaaaagagctatgtctgttaaaagaccaagttcttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgtaagga |
46642584 |
T |
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| Q |
118 |
tcatctagtgacggtgcacaaaagatacctgtgtagttgcatacatttgggccataccagtttaaggtggtgttttttgggtctgaggtgaatgtttgtt |
217 |
Q |
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| T |
46642583 |
tcatctagtgacggtgcacaaatgatacctgtgtagttgcatacatttgggccataccagtttaaagtggtgttttttgggtctgaggtgaatgtttgtt |
46642484 |
T |
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| Q |
218 |
tccatgcttggagtgctatgtaggctttggtgagtcttgggttta |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46642483 |
tccatgcttggagtgctatgtaggctttggtgagtcttggattta |
46642439 |
T |
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