View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17672_low_14 (Length: 272)
Name: NF17672_low_14
Description: NF17672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17672_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 44714466 - 44714708
Alignment:
| Q |
11 |
ggagcagagaacactaacaaggtgtgagtgccatctctagatcccacattttttacatcaacgtgaagggcaattgagagtttgccacatcttgcatgtg |
110 |
Q |
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| T |
44714466 |
ggagcagagaacactaacaaggtgtgagtgccatctctagatcccacattttttacatcaacgtgaagggcaattgagagtttgccacatcttgcatgtg |
44714565 |
T |
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| Q |
111 |
tcactctaattgctttgtttgaaatgtttgtgttgttgccatgtcggtgaccatggaccggaactgacaccaccgtgggtgcactagataattcgtgaac |
210 |
Q |
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| T |
44714566 |
tcactctaattgctttgtttgaaatgtttgtgttgttgccatgtcggtgaccatggactggaactgacaccactgtgggtgcactagataattcgtgaac |
44714665 |
T |
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| Q |
211 |
aaaatgtgtgtatgttaatccatgtccaaatggatatacaact |
253 |
Q |
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| T |
44714666 |
aaaatgtgtgtatgttaatccatgtccaaatggatatacaact |
44714708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 39091296 - 39091070
Alignment:
| Q |
17 |
gagaacactaacaaggtgtgagtgccatctctagatcccacattttttacatcaacgtgaagggcaattgagagtttgccacatcttgcatgtgtcactc |
116 |
Q |
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| T |
39091296 |
gagaacaccaacaaagtgttagtaccatcttttgaaccaacgtttttaacatcaatgtcaagtctaattgaaagcttgccacatcgtgcatgtgtcactc |
39091197 |
T |
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| Q |
117 |
taattgctttgtttgaaatgtttgtgttgttgccatgtcggtgaccatggaccggaactgacaccaccgtgggtgcactagataattcgtgaacaaaatg |
216 |
Q |
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| T |
39091196 |
taattgc--tgctt----tgtttgagctgtttccacggcggtgtccgtctactggaactgacaccacttttggtgcactagctaatgtgtgaacaaagtt |
39091103 |
T |
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| Q |
217 |
tgtgtatgttaatccatgtccaaatggatatac |
249 |
Q |
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| T |
39091102 |
tgtgtaagataatccgtaaccaaatggatatac |
39091070 |
T |
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