View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17672_low_16 (Length: 266)
Name: NF17672_low_16
Description: NF17672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17672_low_16 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 266
Target Start/End: Complemental strand, 4586992 - 4586746
Alignment:
| Q |
15 |
gaggaaaatacaaaaaagaatcggacatgtcacacttcacacatgatgctttcactagcttgggcattgagtgttgaaccgctacttaatttggtaagtg |
114 |
Q |
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| T |
4586992 |
gaggaaaatacaaaaaagaatcggacatgtcacacttcacacatgatgctttcactagcttgggcattgagtgttgaaccgctacttaatttggtaagtg |
4586893 |
T |
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| Q |
115 |
attaatggatatttcttcaaatatgtaagaatagtagggcatttgatcaaaatttggaagcgttacggacgtgaaacgacatttcaagttaatgaatctt |
214 |
Q |
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| T |
4586892 |
attaatggatatttcttcaaatatgtaagaatagtagggcatttgatcaaaatttggaaacgttacagacgtga-----cgtttcaagttaatgaatatt |
4586798 |
T |
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| Q |
215 |
tacaaaagtacacgactacatcgagatttgatacttcagttgaagctatagc |
266 |
Q |
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| T |
4586797 |
tacaaaaatacacgactacatcaagatttgatacttcggttgaagctatagc |
4586746 |
T |
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