View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17672_low_4 (Length: 639)
Name: NF17672_low_4
Description: NF17672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17672_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 438; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 10 - 463
Target Start/End: Complemental strand, 32695823 - 32695370
Alignment:
| Q |
10 |
catcatcatcatctccataaccataaccatagtaactatcatatccatcttcttggtcttgttgttcatctacaacttgtgtttcacttggattttgcaa |
109 |
Q |
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| T |
32695823 |
catcatcatcatctccataaccataaccatagtaactatcatatccatcttcttggtcttgttgttcatctacaacttgtgtttcacttggattttgcaa |
32695724 |
T |
|
| Q |
110 |
tgcttcataagtgcgatgatgagcattgttgttatacacaactagggctttcttgtgttcatcacaatttccaccaccttcttcaattaaaccatcttct |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32695723 |
tgcttcataagtgcgatgatgagcattgttgttatacacaactagggctttattgtgatcatcacaatttccaccaccttcttcaattaaaccatcttct |
32695624 |
T |
|
| Q |
210 |
ttggagtgacgatgagaatggctcccccaaacagaatgaaacttatctgaaattgaactcataagaaactttttgttcttcatgagtgagaatataatca |
309 |
Q |
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| T |
32695623 |
ttggagtgacgatgagaatggctcccccaaacagaatgaaacttatctgaaattgaactcataagaaactttttgttcttcatgagtgagaatataatca |
32695524 |
T |
|
| Q |
310 |
aacgagctttgatggcatttgttttggactttatagccatagtttttgactttgtcattgcggttaaaccggcaatgatttgcttcaacaattttgcagt |
409 |
Q |
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| T |
32695523 |
aacgagctttgacggcatttgttttggactttatagccatagtttttgactttgtcattgcggttaaaccggcaatgatttgcttcaacaattttgctgt |
32695424 |
T |
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| Q |
410 |
tttgctcttcatgtttgtcattgtagtaataattgatgactctagagacttagc |
463 |
Q |
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| T |
32695423 |
tttgctcttcatgtttgtcattgtagtaataattgatgactctagagacttagc |
32695370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 30 - 460
Target Start/End: Complemental strand, 32679728 - 32679310
Alignment:
| Q |
30 |
ccataaccatagtaactatcatatccatcttcttggtcttgttgttcatctacaacttgtgtttcacttggattttgcaatgcttcataagtgcgatgat |
129 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| || | |
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| T |
32679728 |
ccataaccatagtaactatcatatccatctccttggtcttgttgttcatccacaacttgtgtttcacttggatttcgcaacgcttcataactg------t |
32679635 |
T |
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| Q |
130 |
gagcattgttgttatacacaactagggctttcttgtgttcatcacaatttccaccaccttcttcaattaaaccatcttctttggagtgacgatgagaatg |
229 |
Q |
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|| | |||||||||||||||||||||||||| ||||| |||||| |||| ||||| |||||||||||||| |||||||||| ||||| |||||||||| |
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| T |
32679634 |
gacctttgttgttatacacaactagggctttattgtgatcatcaaaattgccacc---ttcttcaattaaacaatcttctttgaagtgatgatgagaatg |
32679538 |
T |
|
| Q |
230 |
gctcccccaaacagaatgaaacttatctgaaattgaactcataagaaactttttgttcttcatgagtgagaatataatcaaacgagctttgatggcattt |
329 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||| ||||| |||||| ||||||||||||||| |||| |
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| T |
32679537 |
gctcccccaaacagaatgaaacttctctgaaattgaactcataaggaactttttgttc---atgactgagagtataattgaacgagctttgatggtattt |
32679441 |
T |
|
| Q |
330 |
gttttggactttatagccatagtttttgactttgtcattgcggttaaaccggcaatgatttgcttcaacaattttgcagttttgctcttcatgtttgtca |
429 |
Q |
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||||||||||||| || ||||||||||||||||||||||| ||||||| |||||||||||||||| ||||| ||||| |||||| |||||||||| ||| |
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| T |
32679440 |
gttttggactttaaagacatagtttttgactttgtcattgaggttaaatcggcaatgatttgctttaacaaatttgctgttttgttcttcatgttgctca |
32679341 |
T |
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| Q |
430 |
ttgtagtaataattgatgactctagagactt |
460 |
Q |
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||||||||| |||||||||||||||||||| |
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| T |
32679340 |
ttgtagtaactattgatgactctagagactt |
32679310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 205 - 450
Target Start/End: Complemental strand, 32686606 - 32686370
Alignment:
| Q |
205 |
cttctttggagtgacgatgagaatggctcccccaaacagaatgaaacttatctgaaattgaactcataagaaactttttgttcttcatgagtgagaatat |
304 |
Q |
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| T |
32686606 |
cttctttggagtgatgatgagaatgactcccccaaacagaatgaaacttatctgaaattgaactcataaggaactttttattcttcatgagtgagaatat |
32686507 |
T |
|
| Q |
305 |
aatcaaacgagctttgatggcatttgttttggactttatagccatagtttttgactttgtcattgcggttaaaccggcaatgatttgcttcaacaatttt |
404 |
Q |
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||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||| || || ||||||||| ||||||| |
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| T |
32686506 |
aattaaacgagctttgatggcatttgttttggactttaatgccatagttttggacttt---------gttaaaccagctataatttgcttctgcaatttt |
32686416 |
T |
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| Q |
405 |
gcagttttgctcttcatgtttgtcattgtagtaataattgatgact |
450 |
Q |
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| T |
32686415 |
gctgttttgttcatcatgttgctcattgtagtaataattgatgact |
32686370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 526 - 621
Target Start/End: Complemental strand, 32679243 - 32679148
Alignment:
| Q |
526 |
ttttggtattgtttaggtttgagattgagagagaggtgatagtttgaagagaggattgttattgtacaagctttgtactttgttacgaacgagtac |
621 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32679243 |
ttttggtaatgtttaggtttgagattgagagagaggtgatagtttgaagagaggattgttattgtacaagctttgtactttggcacgaacgagtac |
32679148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 523 - 621
Target Start/End: Complemental strand, 32695310 - 32695211
Alignment:
| Q |
523 |
caattttggtattgtttaggtttgagattgagagagaggtgatagtttgaagagaggatt-gttattgtacaagctttgtactttgttacgaacgagtac |
621 |
Q |
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| T |
32695310 |
caattttggtattgtttaggtttgagattgagagagaggtgatagtttgaagagaggattggttattgtacaagctttgtactttggcacgaacgagtac |
32695211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 523 - 607
Target Start/End: Complemental strand, 32686312 - 32686228
Alignment:
| Q |
523 |
caattttggtattgtttaggtttgagattgagagagaggtgatagtttgaagagaggattgttattgtacaagctttgtactttg |
607 |
Q |
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| T |
32686312 |
caattttgggaatgtttaggtttgagattgatagagaggtgatagtttgaagagaggattgttattgtacaagctttgtactttg |
32686228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 37 - 184
Target Start/End: Complemental strand, 32686744 - 32686606
Alignment:
| Q |
37 |
catagtaactatcatatccatcttcttggtcttgttgttcatctacaacttgtgtttcacttggattttgcaatgcttcataagtgcgatgatgagcatt |
136 |
Q |
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| T |
32686744 |
catagtaaccaccatgtccatcttcttgatcttgtt---catccacaacttgtgtttcacttggatttcgcaacgcctcataagtg------tgagcatt |
32686654 |
T |
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| Q |
137 |
gttgttatacacaactagggctttcttgtgttcatcacaatttccacc |
184 |
Q |
| |
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||||| ||||||||| | |||| | || || |||||| |||| ||||| |
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| T |
32686653 |
gttgtaatacacaaccatggctctattatgatcatcataattgccacc |
32686606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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