View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17672_low_6 (Length: 439)
Name: NF17672_low_6
Description: NF17672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17672_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 4 - 357
Target Start/End: Original strand, 2013400 - 2013752
Alignment:
| Q |
4 |
aagtgctcctccaggatcctctacaactagtaatgcagaaagcatcccttccactccaatgttcagcgaagagttgaaggtttcttctgatttgagaaag |
103 |
Q |
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| T |
2013400 |
aagtgctcctccaggatcctctacaactagtaatgcagaaagtattccttccactccaatgttcagcgaagagttgaaggtttcttctgatttgagaaag |
2013499 |
T |
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| Q |
104 |
ttcacattcaatgagctaaagatggcaactaggaatttttgacccgagagtcttcttggcgagggaggattcggttgtgtcttcaaaggttggattgagg |
203 |
Q |
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| T |
2013500 |
ttcacattcaatgagctaaagatggcaactaggaatttccgacccgagagtcttcttggtgagggaggattcggttgtgtattcaaaggttggattgagg |
2013599 |
T |
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| Q |
204 |
agaatggaacggcaccggtgaaaccatgtactggacttaccgtcgtggtcaagaccctcaaccatgatggacttcaaggtcacaaagagtggcttgtacg |
303 |
Q |
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| T |
2013600 |
agaatggaactgcaccagtgaaaccaggtactggacttaccgtcgcggtcaagaccctcaaccatgatggacttcaaggtcacaaagagtggcttgtacg |
2013699 |
T |
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| Q |
304 |
aacgagacttaaaacccccttatacttgaatttattttttccttcgatgaattt |
357 |
Q |
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| T |
2013700 |
aacgagacttaaaa-ccccttattcttgactttattttttccttcgatgaattt |
2013752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 65 - 301
Target Start/End: Original strand, 3168694 - 3168930
Alignment:
| Q |
65 |
ttcagcgaagagttgaaggtttcttctgatttgagaaagttcacattcaatgagctaaagatggcaactaggaatttttgacccgagagtcttcttggcg |
164 |
Q |
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| T |
3168694 |
ttcagcgaggagttgaaggttgcttcttgtttaagaaaattcacattcaatggacttaaggtagcaactaggaatttcagaccagaaagtcttctaggtg |
3168793 |
T |
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| Q |
165 |
agggaggattcggttgtgtcttcaaaggttggattgaggagaatggaacggcaccggtgaaaccatgtactggacttaccgtcgtggtcaagaccctcaa |
264 |
Q |
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| T |
3168794 |
aaggaggttttggttgtgtcttcaaaggttggattgaagagaatggaactgcgcctgtgaaaccgggtaccggacttacggttgcggttaagatccttaa |
3168893 |
T |
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| Q |
265 |
ccatgatggacttcaaggtcacaaagagtggcttgta |
301 |
Q |
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| T |
3168894 |
tcacaatggacatcaaggtcacaaagaatggcttgta |
3168930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 110 - 297
Target Start/End: Complemental strand, 25138105 - 25137918
Alignment:
| Q |
110 |
ttcaatgagctaaagatggcaactaggaatttttgacccgagagtcttcttggcgagggaggattcggttgtgtcttcaaaggttggattgaggagaatg |
209 |
Q |
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|||||||| || ||| ||||||| || |||||| | |||||||||||||| || || || ||||| |||||||| |||||||| |||||||| || |||| |
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| T |
25138105 |
ttcaatgatcttaagttggcaacaagaaattttcggcccgagagtcttctcggtgaaggtggatttggttgtgtgttcaaaggatggattgaagaaaatg |
25138006 |
T |
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| Q |
210 |
gaacggcaccggtgaaaccatgtactggacttaccgtcgtggtcaagaccctcaaccatgatggacttcaaggtcacaaagagtggct |
297 |
Q |
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| T |
25138005 |
gaactgcaccagtgaaacctggcacaggacttactgttgcagtcaaaacccttaaccatgatggcctccagggtcataaagaatggct |
25137918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 297
Target Start/End: Original strand, 16888567 - 16888754
Alignment:
| Q |
110 |
ttcaatgagctaaagatggcaactaggaatttttgacccgagagtcttcttggcgagggaggattcggttgtgtcttcaaaggttggattgaggagaatg |
209 |
Q |
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|||||||| || ||| ||||||| || ||||| | || |||||| |||||||||| || || || |||||||| ||||||||||||||||| || |||| |
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| T |
16888567 |
ttcaatgaacttaagttggcaacaagaaatttccggcctgagagttttcttggcgaaggtgggtttggttgtgttttcaaaggttggattgaagaaaatg |
16888666 |
T |
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| Q |
210 |
gaacggcaccggtgaaaccatgtactggacttaccgtcgtggtcaagaccctcaaccatgatggacttcaaggtcacaaagagtggct |
297 |
Q |
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| T |
16888667 |
gaactgctccagtgaaacctggcacagggcttacagttgctgtaaaaacccttaaccacgatgggcttcagggtcataaagaatggct |
16888754 |
T |
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