View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17673_high_1 (Length: 484)
Name: NF17673_high_1
Description: NF17673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17673_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 3573734 - 3573271
Alignment:
| Q |
1 |
tagcagtacaacttaatcatccatagaacaaagttaaatgagcaagataagttaaattgacccttgaactacaattctgctgcatgaatcggagctggtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3573734 |
tagcagtacaacttaatcatccatagaacaaagttaaatgagcaagataagttaaattgacccttgaactacaattctgctgcatgaatcggagctggtc |
3573635 |
T |
|
| Q |
101 |
atacaatcaaccatgccgtccgttttcttctctgacgatctcctcactagttcctttcattacttcctgtgaaatcacttcttcgtttcaaatgtgtaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3573634 |
atacaatcaaccatgccgtccgttttcttctctgacgatctcctcactagttcctttcattacttcctgtgaaatcacttcttcgtttcaaatgtgtaag |
3573535 |
T |
|
| Q |
201 |
taatccttggaacactctcattt---atcccaatttcatgaaattctatctcaagaaatcaaaatcacaaaatccacaattcaaactaatctctgagaac |
297 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3573534 |
taatccttggaacactctcatttccgatcccaatttcatgaaattctatctcaagaaatcaaaatcacaaaatccacaattcaaactaatctctgagaac |
3573435 |
T |
|
| Q |
298 |
cacaaaacaatcaaaggagttgaccctgacggtagggacgatctctatgaggaagattacagtatcattccatatcctatatctcgtttacttgataacc |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3573434 |
cacaaaacaatcaaaggagttgaccctgacggtagggacgatctctatgaggaagattacagtatcattccatatcctatatctcgtttacttgataacc |
3573335 |
T |
|
| Q |
398 |
cttcgtttacccttgtcgctgattctcactctctattgaatcaaaatcattacaatattcttgg |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3573334 |
cttcgtttacccttgtcgctgattctcactctctattgaatcaaaatcattacaatattgttgg |
3573271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 160 - 443
Target Start/End: Original strand, 3564858 - 3565144
Alignment:
| Q |
160 |
ttacttcctgtgaaatcacttcttcgtttcaaatgtgtaagtaatccttggaacactctcattt---atcccaatttcatgaaattctatctcaagaaat |
256 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||| ||||| |
|
|
| T |
3564858 |
ttacttcctgtaaaatcacttcttcgtttcaaatgtgtaagtaatccttggaacactctcatttccgatcccaattttgtgaaattccatctcatgaaat |
3564957 |
T |
|
| Q |
257 |
caaaatcacaaaatccacaattcaaactaatctctgagaaccacaaaacaatcaaaggagttgaccctgacggtagggacgatctctatgaggaagatta |
356 |
Q |
| |
|
||||||||||||||| | | |||| |||||| || | ||| |||| ||||| ||| | |||| | ||||| |||||| |||| ||||| |
|
|
| T |
3564958 |
caaaatcacaaaatcaatacttcacactaataactcatcacctaaaaattatcaagggaaattccccttatggtagtgacgatgaagctgagattgatta |
3565057 |
T |
|
| Q |
357 |
cagtatcattccatatcctatatctcgtttacttgataacccttcgtttacccttgtcgctgattctcactctctattgaatcaaaa |
443 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||| || ||||| |||| |||||| |||||||| | |||||| |||| |
|
|
| T |
3565058 |
cagtatcattccatatcctatacctcgtttactcgataacccgtcatttacggttgttgctgatcctcactctatgttgaatgaaaa |
3565144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 352 - 437
Target Start/End: Complemental strand, 1687034 - 1686949
Alignment:
| Q |
352 |
gattacagtatcattccatatcctatatctcgtttacttgataacccttcgtttacccttgtcgctgattctcactctctattgaa |
437 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||| ||||||| ||| |||||||||| |||||| |||||||||||||||| |
|
|
| T |
1687034 |
gattacagtttcattccatatcctatatcttgtttactcgataacctgtcgattacccttgttgctgatcctcactctctattgaa |
1686949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 152 - 443
Target Start/End: Original strand, 3556832 - 3557126
Alignment:
| Q |
152 |
tcctttcattacttcctgtgaaatcacttcttcgtttcaaatgtgtaagtaatccttggaacactctcattt---atcccaatttcatgaaattctatct |
248 |
Q |
| |
|
|||||||||||||| |||||||||| || ||||| || | ||| |||||||| |||||||| |||| |||| |||||||||| |||||||| |||| |
|
|
| T |
3556832 |
tcctttcattactttctgtgaaatctctacttcgatttagatgcgtaagtaagtcttggaacgctctaatttctgatcccaattttgtgaaattccatct |
3556931 |
T |
|
| Q |
249 |
caagaaatcaaaatcacaaaatccacaattcaaactaatctctgagaaccacaaaacaatcaaaggagttgaccctgacggtagggacgatctctatgag |
348 |
Q |
| |
|
||||| ||||||||||||||||| || |||| |||| || || | || |||||| || | |||| |||| |||| || ||| || | |||| |
|
|
| T |
3556932 |
caagagatcaaaatcacaaaatcaactcttcacactagtcactaaatacatcaaaactattatgggagaatccccttacggaagtgactatgaatctgag |
3557031 |
T |
|
| Q |
349 |
gaagattacagtatcattccatatcctatatctcgtttacttgataacccttcgtttacccttgtcgctgattctcactctctattgaatcaaaa |
443 |
Q |
| |
|
|||||| ||||||||||||| |||||| | |||||||| |||||||| || ||||||||| || ||||| ||| ||||||||||||| |||| |
|
|
| T |
3557032 |
actgattacggtatcattccataccctataccccgtttactcgataacccgtcctttacccttatcactgatcctcgctctctattgaatgaaaa |
3557126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 125 - 271
Target Start/End: Complemental strand, 1687304 - 1687154
Alignment:
| Q |
125 |
ttcttctctgacgatctcctca-ctagttcctttcattacttcctgtgaaatcacttcttcgtttcaaatgtgtaagtaatccttggaacactctcattt |
223 |
Q |
| |
|
||||||||||| ||||||||| | || |||||||||||||| |||||||||| || ||||| |||| ||| |||||||| |||||||| |||| |||| |
|
|
| T |
1687304 |
ttcttctctgatgatctcctcgtcgagatcctttcattactttctgtgaaatctctccttcgattcagatgcgtaagtaagtcttggaacgctctaattt |
1687205 |
T |
|
| Q |
224 |
---atcccaatttcatgaaattctatctcaagaaatcaaaatcacaaaatc |
271 |
Q |
| |
|
||||| ||| |||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
1687204 |
ctgatcccttttttgtgaaattccatctcaagagatcaaaatcacaaaatc |
1687154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 352 - 436
Target Start/End: Complemental strand, 39379828 - 39379744
Alignment:
| Q |
352 |
gattacagtatcattccatatcctatatctcgtttacttgataacccttcgtttacccttgtcgctgattctcactctctattga |
436 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| |||| ||||||||||||||||||||||| |||||| |||||| |||||||| |
|
|
| T |
39379828 |
gattacagtatcattccataccctatacctcgtatactcgataacccttcgtttacccttgttgctgatcctcactttctattga |
39379744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 128 - 276
Target Start/End: Complemental strand, 39380014 - 39379862
Alignment:
| Q |
128 |
ttctctgacgatctcctcact-agttcctttcattacttcctgtgaaatcacttcttcgtttcaaatgtgtaagtaatccttggaacactctcattt--- |
223 |
Q |
| |
|
||||| |||||||| ||||| || ||||||| ||||||||||| ||||| || ||||| |||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
39380014 |
ttctccgacgatcttctcaccgagatcctttcgttacttcctgtaaaatctctacttcgattcaaatgtgtaagcaatccttggaaaactctcatttccg |
39379915 |
T |
|
| Q |
224 |
atcccaatttcatgaaattctatctcaagaaatcaaaatcacaaaatccacaa |
276 |
Q |
| |
|
|||||||||| | ||||| | ||||||||| |||||||| |||||||||| |
|
|
| T |
39379914 |
atcccaattttgtcaaatttcacttcaagaaattaaaatcacgaaatccacaa |
39379862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University