View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17673_high_12 (Length: 287)
Name: NF17673_high_12
Description: NF17673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17673_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 271
Target Start/End: Original strand, 3746090 - 3746338
Alignment:
| Q |
13 |
attctcatgtacgcgccaaagcagtatatatctttgaggatggtcaagtgctactgaagtttatagggggtgttgacaaatgtttgattctttatgatat |
112 |
Q |
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| T |
3746090 |
attctcatgtacgcgccaaagcagtatatatctttgaggatggtcaagtgctactgaagtttatagggggtgttgacaaatgtttgattctttatgatat |
3746189 |
T |
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| Q |
113 |
caagagaggtactttgaagtctactgattttagaaaagttccagaagtctgtgttgagagtttaatatcaccatgttcttttgttaggatgtagttgtgg |
212 |
Q |
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| T |
3746190 |
caagagaggtactttgaagtctactgattttagaaaagttccagaagtctgtgttgagagtttaatatcaccatgttcttttactaggatgtagttgtgg |
3746289 |
T |
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| Q |
213 |
tgctatatgttagtttatgttatttattttgtacttgttttggttagagttgcttcttg |
271 |
Q |
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| T |
3746290 |
tgcta----------tatgttatttatttcgtacttgttttggttagagttgcttcttg |
3746338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 3754821 - 3754888
Alignment:
| Q |
152 |
tccagaagtctgtgttgagagtttaatatcaccatgttct-tttgttaggatgtagttgtggtgctat |
218 |
Q |
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| T |
3754821 |
tccagaagtctgtggtgaaagtttaatatcaccatcttctctatgctaggatgtagatgtggtgctat |
3754888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 184
Target Start/End: Complemental strand, 4142027 - 4141938
Alignment:
| Q |
95 |
tttgattctttatgatatcaagagaggtactttgaagtctactgattttagaaaagttccagaagtctgtgttgagagtttaatatcacc |
184 |
Q |
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| T |
4142027 |
tttgattctttacaatcccaggaggggtactttcaaggctactaattttaaacgaattcctgaagtctgtgttgaaagtttaatatcacc |
4141938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 763385 - 763345
Alignment:
| Q |
152 |
tccagaagtctgtgttgagagtttaatatcaccatgttctt |
192 |
Q |
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| T |
763385 |
tccagcagtctatgttgagagtttaatatcaccttgttctt |
763345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 216
Target Start/End: Original strand, 11082003 - 11082099
Alignment:
| Q |
121 |
gtactttgaagtctactgattttagaaaagttccagaagtctgtgttgagagtttaatatcaccatgttct-tttgttaggatgtagttgtggtgct |
216 |
Q |
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| T |
11082003 |
gtactttgaaggctaataattttaaagatattccagaagtctgtgttgaaagtttagtatcaccttgttctctatattaagatgtagatgtggtgct |
11082099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 1427508 - 1427460
Alignment:
| Q |
167 |
tgagagtttaatatcaccatgttctt-ttgttaggatgtagttgtggtg |
214 |
Q |
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| T |
1427508 |
tgagagtttaatatcaccttgttcttattgttaagatgtagatgtggtg |
1427460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 1427647 - 1427603
Alignment:
| Q |
28 |
ccaaagcagtatatatctttgaggatggtcaagtgctactgaagt |
72 |
Q |
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| T |
1427647 |
ccaaggcaatatatatctttgaggatgatcaagtgctgctgaagt |
1427603 |
T |
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