View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17673_high_13 (Length: 285)
Name: NF17673_high_13
Description: NF17673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17673_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 165 - 271
Target Start/End: Original strand, 18655946 - 18656052
Alignment:
| Q |
165 |
cccatcaccaccaattatcaaccttcatcttcatcctactcttccctttccttaaatcacaaactgcaagacaacaaaacaacacaggctacacttgtcc |
264 |
Q |
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| T |
18655946 |
cccatcaccaccaattatcaaccttcatcttcatcctactcttccctttccttaaatcacaaactgcaagacaacaaaacaacacaggctacacttgtcc |
18656045 |
T |
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| Q |
265 |
caacaac |
271 |
Q |
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||||||| |
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| T |
18656046 |
caacaac |
18656052 |
T |
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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 18655792 - 18655848
Alignment:
| Q |
11 |
cataggaacattgacttgaacattgactagtcagatctcaaagccgactcatccccc |
67 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18655792 |
cataggaaccttgacttgaacattgactagtcagatctcaaagccgactcatccccc |
18655848 |
T |
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