View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17673_high_19 (Length: 242)
Name: NF17673_high_19
Description: NF17673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17673_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 37219436 - 37219548
Alignment:
| Q |
1 |
caagttttgtgcgtttccttgttcttatattccagaagttctttatctcattatcagttcttccaggcaactaacacaa--attaaacaaatacaaaata |
98 |
Q |
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| T |
37219436 |
caagttttgtgcgtttccttgttcttatattccagaagttctttatctcattatcagttcttccaggcaactaacacaaatatgaaacaaatacaaaata |
37219535 |
T |
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| Q |
99 |
agtatatgagaca |
111 |
Q |
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| T |
37219536 |
agtatatgagaca |
37219548 |
T |
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Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 37219607 - 37219704
Alignment:
| Q |
130 |
acaaacatatgcatgtaaactatattggaataattgatgtcatgctttttaaaagctctcgttcactttaaatgaggattgttgactatagaaaatat |
227 |
Q |
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| T |
37219607 |
acaaacacatgcatgtaaactatattggaataattgatgtcatgctttttaaaagctctcgttcactttaaatgaggattgttgactatagaaaatat |
37219704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 9823191 - 9823285
Alignment:
| Q |
14 |
tttccttgttcttatattccagaagttctttatctcattatcagttcttccaggcaactaacacaaat-taaacaaatacaaaataagtatatga |
107 |
Q |
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| T |
9823191 |
tttccttattcttatatgccagaagttttttatgtcattatcagttctttcaggcacatgacacaaatggaaaaaaatacaaaataagtatatga |
9823285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 37218729 - 37218821
Alignment:
| Q |
12 |
cgtttccttgttcttatattccagaagttctttatctcattatcagttcttccaggcaactaacacaaattaaacaaatacaaaataagtata |
104 |
Q |
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| T |
37218729 |
cgtttctttgttcttatattatggtagttatctatctcatttcctcttcttccaggcaactaacacaaatcaaacaaatacaaaataagtata |
37218821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 33695887 - 33695850
Alignment:
| Q |
30 |
ttccagaagttctttatctcattatcagttcttccagg |
67 |
Q |
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| T |
33695887 |
ttccagaaattctttatctcattatctgttcttccagg |
33695850 |
T |
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