View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17673_high_2 (Length: 425)
Name: NF17673_high_2
Description: NF17673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17673_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 91 - 409
Target Start/End: Complemental strand, 9723135 - 9722817
Alignment:
| Q |
91 |
attcttaagacagaagtttcctgctcattatgatcttatctgactcgagagattagtctctgctatcgagtactccttccagaagatggtgatccactcc |
190 |
Q |
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| T |
9723135 |
attcttaagacagaagttttctgctcattatgatcttatctgactcgagagattagtctctgctatcgagtactccttccagaagatggcgatccactcc |
9723036 |
T |
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| Q |
191 |
cagatccatacatattatgtcccatcatcatcatcatagaagatggaactccaactccatgaccataaactccaccactatcctcaccaacattcccatc |
290 |
Q |
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| T |
9723035 |
cagatccatacatattatgtcccatcatcatcatcatagaagatggaactccaactccatgaccataaactccaccactaccctcaccaacattcccatc |
9722936 |
T |
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| Q |
291 |
tctttgatcactcctaccaatcatagcactcttttcaccttccatctctctatacttactcaaataaatcttgagtggctcaacataatcttcaaatcca |
390 |
Q |
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| T |
9722935 |
tctctgatcactcctaccaatcatagcactcttctctccttccatctccctatacttactcaaataaatcttgagtggctcaacataatcttcaaatcca |
9722836 |
T |
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| Q |
391 |
agagttgtcatagcccaaa |
409 |
Q |
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| T |
9722835 |
agagttgtcatagcccaaa |
9722817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 9723198 - 9723138
Alignment:
| Q |
1 |
ccaaaagtatttagatgagatgactcggatttcttttagtttaatcataggtcttgagttc |
61 |
Q |
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|||| ||||||||||||||||||||| ||||||||| ||||||| |||| | |||||||| |
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| T |
9723198 |
ccaagagtatttagatgagatgactccgatttctttcggtttaattatagattttgagttc |
9723138 |
T |
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