View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17673_low_14 (Length: 284)

Name: NF17673_low_14
Description: NF17673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17673_low_14
NF17673_low_14
[»] chr6 (6 HSPs)
chr6 (1-266)||(14733859-14734124)
chr6 (1-266)||(15594476-15594741)
chr6 (105-253)||(31130957-31131106)
chr6 (110-194)||(8887543-8887629)
chr6 (126-176)||(26227537-26227587)
chr6 (101-176)||(9344651-9344727)
[»] chr4 (9 HSPs)
chr4 (126-254)||(14283894-14284022)
chr4 (126-254)||(14818053-14818181)
chr4 (98-177)||(28085792-28085872)
chr4 (98-176)||(10667439-10667518)
chr4 (98-176)||(10881584-10881663)
chr4 (126-176)||(24698016-24698066)
chr4 (98-176)||(24854260-24854338)
chr4 (98-164)||(14827921-14827988)
chr4 (167-249)||(13712151-13712235)
[»] chr2 (4 HSPs)
chr2 (98-260)||(21339379-21339542)
chr2 (99-254)||(21889320-21889476)
chr2 (98-164)||(16879309-16879376)
chr2 (98-164)||(16991442-16991509)
[»] scaffold0005 (2 HSPs)
scaffold0005 (126-254)||(21530-21658)
scaffold0005 (98-164)||(11721-11788)
[»] chr3 (6 HSPs)
chr3 (103-178)||(383094-383169)
chr3 (98-177)||(22805014-22805094)
chr3 (98-176)||(19242900-19242979)
chr3 (126-176)||(21949776-21949826)
chr3 (98-177)||(22800206-22800286)
chr3 (4-36)||(381863-381895)
[»] chr1 (4 HSPs)
chr1 (98-176)||(8046269-8046348)
chr1 (98-180)||(43517446-43517529)
chr1 (98-178)||(10216805-10216886)
chr1 (98-169)||(24058701-24058773)
[»] chr7 (5 HSPs)
chr7 (98-177)||(39887832-39887912)
chr7 (1-176)||(5602459-5602634)
chr7 (98-177)||(17148171-17148251)
chr7 (98-177)||(11020825-11020905)
chr7 (159-254)||(20920684-20920780)
[»] chr5 (3 HSPs)
chr5 (98-179)||(21492998-21493078)
chr5 (105-179)||(19078991-19079065)
chr5 (105-179)||(19079235-19079309)
[»] chr8 (3 HSPs)
chr8 (98-162)||(24716117-24716181)
chr8 (98-176)||(23808586-23808665)
chr8 (99-176)||(30612843-30612921)
[»] scaffold0627 (1 HSPs)
scaffold0627 (126-177)||(1900-1951)
[»] scaffold0188 (1 HSPs)
scaffold0188 (98-169)||(12595-12667)
[»] scaffold0240 (1 HSPs)
scaffold0240 (98-176)||(10055-10134)
[»] scaffold0047 (1 HSPs)
scaffold0047 (98-164)||(24732-24799)


Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-144; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 14733859 - 14734124
Alignment:
Q  1 ggattcaagtggttactagaagaatgtattggatttataagattgttgtatcaaatgtacgaacttatttagatgagtatatttattgagattgttgtgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14733859 ggattcaagtggttactagaagaatgtattggatttataagattgttgtatcaaatgtacgaactcatttagatgagtatatttattgagattgttgtgt 14733958  T
Q  101 tgtaaattgtaaggtatctaatactaagataatgcacatactaaattttctatatacgtttagtatgggtgttacatttggtatcagagaaggttgacta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14733959 tgtaaattgtaaggtatctaatactaagataatgcacatactaaattttctatatacgtttagtatgggtgttacatttggtatcagagaaggtcgacta 14734058  T
Q  201 agatcgtgccatgggtcattagatttcaactaacgtagtggagccattgggttctgggtatttatt 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14734059 agatcgtgccatgggtcattagatttcaactaacgtagtggagccattgggttctgggtatttatt 14734124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 15594476 - 15594741
Alignment:
Q  1 ggattcaagtggttactagaagaatgtattggatttataagattgttgtatcaaatgtacgaacttatttagatgagtatatttattgagattgttgtgt 100  Q
    ||||||||||| |||  ||||| ||||||||||||| |  ||||   |||||| |||||||||||| | || |||  |||||| |||||     || |||    
T  15594476 ggattcaagtgtttaacagaagtatgtattggatttcttggatttaagtatcagatgtacgaacttgtataaatgtttatattcattgaagcgtttatgt 15594575  T
Q  101 tgtaaattgtaaggtatctaatactaagataatgcacatactaaattttctatatacgtttagtatgggtgttacatttggtatcagagaaggttgacta 200  Q
    |||||||| ||| ||||| | |||||| ||||  ||||| |||| | ||||| |||| ||||||||||||||||||||||||||||||| |||| || |     
T  15594576 tgtaaattttaatgtatccagtactaaaataacacacatgctaactattctagatacatttagtatgggtgttacatttggtatcagagcaggtcgattc 15594675  T
Q  201 agatcgtgccatgggtcattagatttcaactaacgtagtggagccattgggttctgggtatttatt 266  Q
    ||||||||||||| ||||||| ||||||||||| ||||||| |||||||||||| || ||||||||    
T  15594676 agatcgtgccatgagtcattaaatttcaactaatgtagtggggccattgggttccggatatttatt 15594741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 253
Target Start/End: Original strand, 31130957 - 31131106
Alignment:
Q  105 aattgtaaggtatctaatactaagat-aatgcacatactaaattttctatatacgtttagtatgggtgttacatttggtatcagagaaggttgactaaga 203  Q
    |||| ||| ||||||||||||| | | || |||||| |||||| ||||| |||  ||||||||| ||||||||||||||||||||| |||| || | |||    
T  31130957 aattttaatgtatctaatactaggtttaacgcacatgctaaatattctagataaatttagtatgtgtgttacatttggtatcagagcaggtcgattcaga 31131056  T
Q  204 tcgtgccatgggtcattagatttcaactaacgtagtggagccattgggtt 253  Q
    ||||||| || || |||||| |||||  ||||||||||  ||||||||||    
T  31131057 tcgtgccttgagtaattagaattcaatgaacgtagtgggaccattgggtt 31131106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 194
Target Start/End: Original strand, 8887543 - 8887629
Alignment:
Q  110 taaggtatctaatactaagat-aatgcacatactaaattttctatatacgtttagtatgggtgttac-atttggtatcagagaaggt 194  Q
    ||||||||| |||||| || | ||||||||| ||| || ||||| |||  ||||||||||||||||| |||||||||||||||||||    
T  8887543 taaggtatccaatactcagtttaatgcacatgctagatattctagataaatttagtatgggtgttacaatttggtatcagagaaggt 8887629  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 26227587 - 26227537
Alignment:
Q  126 aagataatgcacatactaaattttctatatacgtttagtatgggtgttaca 176  Q
    |||||||||||||||||||| |||||| ||||||||||| |||| ||||||    
T  26227587 aagataatgcacatactaaactttctagatacgtttagtgtgggcgttaca 26227537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 176
Target Start/End: Complemental strand, 9344727 - 9344651
Alignment:
Q  101 tgtaaattgtaaggtatctaatactaa-gataatgcacatactaaattttctatatacgtttagtatgggtgttaca 176  Q
    |||||||| ||| ||||| | |||||| |||||||||||| ||||| ||| || ||||||||||| |||| ||||||    
T  9344727 tgtaaattttaatgtatccagtactaaagataatgcacatgctaaactttgtagatacgtttagtgtgggcgttaca 9344651  T

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Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 126 - 254
Target Start/End: Original strand, 14283894 - 14284022
Alignment:
Q  126 aagataatgcacatactaaattttctatatacgtttagtatgggtgttacatttggtatcagagaaggttgactaagatcgtgccatgggtcattagatt 225  Q
    ||||||| |||||| ||||| |||||| |||||||||||||||||||||||||||||||||||| |||| || | |||||||||||||||||||||  ||    
T  14283894 aagataacgcacatgctaaactttctagatacgtttagtatgggtgttacatttggtatcagagcaggtcgattcagatcgtgccatgggtcattaagtt 14283993  T
Q  226 tcaactaacgtagtggagccattgggttc 254  Q
    |||||||| |||||||  |||||||||||    
T  14283994 tcaactaaggtagtgggaccattgggttc 14284022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 126 - 254
Target Start/End: Original strand, 14818053 - 14818181
Alignment:
Q  126 aagataatgcacatactaaattttctatatacgtttagtatgggtgttacatttggtatcagagaaggttgactaagatcgtgccatgggtcattagatt 225  Q
    |||||||||||||| ||||| |||||| ||||||||||| |||| ||||||||||||||||||| |||| || | |||||| |||| || |||| || ||    
T  14818053 aagataatgcacatgctaaactttctagatacgtttagtgtgggcgttacatttggtatcagagcaggtcgattcagatcgcgccagggatcataaggtt 14818152  T
Q  226 tcaactaacgtagtggagccattgggttc 254  Q
    |||||||| ||||||| ||||||||||||    
T  14818153 tcaactaatgtagtggggccattgggttc 14818181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 28085872 - 28085792
Alignment:
Q  98 tgttgtaaattgtaaggtatctaatacta-agataatgcacatactaaattttctatatacgtttagtatgggtgttacat 177  Q
    ||||||||||| ||| ||||  | ||||| ||||||||||||||||||| |||||| ||||||||||| ||||||||||||    
T  28085872 tgttgtaaattttaatgtattcagtactacagataatgcacatactaaactttctagatacgtttagtgtgggtgttacat 28085792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 176
Target Start/End: Complemental strand, 10667518 - 10667439
Alignment:
Q  98 tgttgtaaattgtaaggtatctaatactaa-gataatgcacatactaaattttctatatacgtttagtatgggtgttaca 176  Q
    ||||||||| | ||| ||||| |||||||| |||||||||||| |||||||||||| ||||||||||| |||| ||||||    
T  10667518 tgttgtaaaatttaatgtatccaatactaaagataatgcacatgctaaattttctagatacgtttagtgtgggcgttaca 10667439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 176
Target Start/End: Complemental strand, 10881663 - 10881584
Alignment:
Q  98 tgttgtaaattgtaaggtatctaatactaa-gataatgcacatactaaattttctatatacgtttagtatgggtgttaca 176  Q
    ||||||||| | ||| ||||| |||||||| |||||||||||| |||||||||||| ||||||||||| |||| ||||||    
T  10881663 tgttgtaaaatttaatgtatccaatactaaagataatgcacatgctaaattttctagatacgtttagtgtgggcgttaca 10881584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 24698016 - 24698066
Alignment:
Q  126 aagataatgcacatactaaattttctatatacgtttagtatgggtgttaca 176  Q
    |||||||||||||||||||| |||||| ||||||||||| |||| ||||||    
T  24698016 aagataatgcacatactaaactttctacatacgtttagtttgggcgttaca 24698066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 176
Target Start/End: Complemental strand, 24854338 - 24854260
Alignment:
Q  98 tgttgtaaattgtaaggtatctaatactaagataatgcacatactaaattttctatatacgtttagtatgggtgttaca 176  Q
    ||||||||||| ||| ||||| | ||||||| |||  ||||| |||||| ||||| | |||||||||||||||||||||    
T  24854338 tgttgtaaattataatgtatccagtactaagttaacccacatgctaaatattctaaacacgtttagtatgggtgttaca 24854260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 14827921 - 14827988
Alignment:
Q  98 tgttgtaaattgtaaggtatctaatactaa-gataatgcacatactaaattttctatatacgtttagt 164  Q
    ||||| ||||| ||| ||||||| |||||| ||||||||||||| |||| |||||| |||||||||||    
T  14827921 tgttgcaaattttaatgtatctattactaaagataatgcacatattaaactttctagatacgtttagt 14827988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 249
Target Start/End: Complemental strand, 13712235 - 13712151
Alignment:
Q  167 gggtgttaca-tttggtatcagagaaggttgactaagatcgtgccatgggtcattagatttcaa-ctaacgtagtggagccattg 249  Q
    |||||||||| ||||||||||||| |||| || | |||||||||| ||||||||| || |||||   |||||||||| |||||||    
T  13712235 gggtgttacaatttggtatcagagcaggtcgattcagatcgtgccttgggtcattggaattcaataaaacgtagtggggccattg 13712151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 98 - 260
Target Start/End: Original strand, 21339379 - 21339542
Alignment:
Q  98 tgttgtaaattgtaaggtatctaatactaa-gataatgcacatactaaattttctatatacgtttagtatgggtgttacatttggtatcagagaaggttg 196  Q
    ||||||||||| ||| |||||   |||||| |||||||||| | ||||| |||||| ||||||||| |||||| ||||||||||||||||||| |||| |    
T  21339379 tgttgtaaattttaatgtatcacgtactaaagataatgcacgtgctaaactttctagatacgtttactatgggcgttacatttggtatcagagcaggtcg 21339478  T
Q  197 actaagatcgtgccatgggtcattagatttcaactaacgtagtggagccattgggttctgggta 260  Q
    | | |||||||||||||||||||||  |||||||||| ||||||| || ||||||||| |||||    
T  21339479 attcagatcgtgccatgggtcattaagtttcaactaaagtagtggggctattgggttccgggta 21339542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 99 - 254
Target Start/End: Original strand, 21889320 - 21889476
Alignment:
Q  99 gttgtaaattgtaaggtatctaatactaa-gataatgcacatactaaattttctatatacgtttagtatgggtgttacatttggtatcagagaaggttga 197  Q
    |||||||||| ||| ||||| | |||||| |||||||||||| ||||| |||||| |||||||||||||||| ||||||||| ||||||||  |||| ||    
T  21889320 gttgtaaattttaatgtatcaagtactaaagataatgcacatgctaaactttctagatacgtttagtatgggcgttacattttgtatcagatcaggtcga 21889419  T
Q  198 ctaagatcgtgccatgggtcattagatttcaactaacgtagtggagccattgggttc 254  Q
     | |||||||||||||||||||||  |||||||||| || | ||  |||||||||||    
T  21889420 ttcagatcgtgccatgggtcattaagtttcaactaatgtggagggaccattgggttc 21889476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 16879309 - 16879376
Alignment:
Q  98 tgttgtaaattgtaaggtatctaatactaa-gataatgcacatactaaattttctatatacgtttagt 164  Q
    ||||||||||| ||| ||||||| |||||| |||||||||||||||||| |||||| |||||||||||    
T  16879309 tgttgtaaattttaatgtatctagtactaaagataatgcacatactaaactttctagatacgtttagt 16879376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 16991442 - 16991509
Alignment:
Q  98 tgttgtaaattgtaaggtatctaatactaa-gataatgcacatactaaattttctatatacgtttagt 164  Q
    ||||||||||| ||| ||||||| |||||| |||||||||||||||||| |||||| |||||||||||    
T  16991442 tgttgtaaattttaatgtatctagtactaaagataatgcacatactaaactttctagatacgtttagt 16991509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 126 - 254
Target Start/End: Complemental strand, 21658 - 21530
Alignment:
Q  126 aagataatgcacatactaaattttctatatacgtttagtatgggtgttacatttggtatcagagaaggttgactaagatcgtgccatgggtcattagatt 225  Q
    |||||||||||||| ||||| |||||| ||||||||||| |||| ||||||||||||||||||| |||| || | |||||| |||| || |||| || ||    
T  21658 aagataatgcacatgctaaactttctagatacgtttagtgtgggcgttacatttggtatcagagcaggtcgattcagatcgcgccagggatcataaggtt 21559  T
Q  226 tcaactaacgtagtggagccattgggttc 254  Q
    |||||||| ||||||| ||||||||||||    
T  21558 tcaactaatgtagtggggccattgggttc 21530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 164
Target Start/End: Complemental strand, 11788 - 11721
Alignment:
Q  98 tgttgtaaattgtaaggtatctaatactaa-gataatgcacatactaaattttctatatacgtttagt 164  Q
    ||||| ||||| ||| ||||||| |||||| ||||||||||||| |||| |||||| |||||||||||    
T  11788 tgttgcaaattttaatgtatctattactaaagataatgcacatattaaactttctagatacgtttagt 11721  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 178
Target Start/End: Original strand, 383094 - 383169
Alignment:
Q  103 taaattgtaaggtatctaatactaagataatgcacatactaaattttctatatacgtttagtatgggtgttacatt 178  Q
    |||||| ||| ||||| | |||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  383094 taaattttaatgtatcgagtactaaaataatgcacatactaaattttctagatacgtttagtatgagtgttacatt 383169  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 22805094 - 22805014
Alignment:
Q  98 tgttgtaaattgtaaggtatctaatactaa-gataatgcacatactaaattttctatatacgtttagtatgggtgttacat 177  Q
    ||||||||||| ||| ||||| | |||||| |||||||||||||||||| |||||| ||||||||||| |||| |||||||    
T  22805094 tgttgtaaattttaatgtatccagtactaaagataatgcacatactaaactttctagatacgtttagtgtgggcgttacat 22805014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 176
Target Start/End: Complemental strand, 19242979 - 19242900
Alignment:
Q  98 tgttgtaaattgtaaggtatctaatactaa-gataatgcacatactaaattttctatatacgtttagtatgggtgttaca 176  Q
    ||||||||||| |||  |||| | |||||| |||||||||||| ||||| |||||| |||||||||||||||||||||||    
T  19242979 tgttgtaaattttaatatatccagtactaaagataatgcacatgctaaactttctagatacgtttagtatgggtgttaca 19242900  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 21949826 - 21949776
Alignment:
Q  126 aagataatgcacatactaaattttctatatacgtttagtatgggtgttaca 176  Q
    |||||||||||||||||||| |||||| |||||||||| ||||||||||||    
T  21949826 aagataatgcacatactaaactttctagatacgtttagaatgggtgttaca 21949776  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 22800286 - 22800206
Alignment:
Q  98 tgttgtaaattgtaaggtatctaatactaa-gataatgcacatactaaattttctatatacgtttagtatgggtgttacat 177  Q
    ||||||||||| ||| ||||| | |||||| ||||||| |||| ||||| |||||| ||||||||||| |||| |||||||    
T  22800286 tgttgtaaattttaatgtatccagtactaaagataatggacatgctaaactttctagatacgtttagtgtgggcgttacat 22800206  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 381863 - 381895
Alignment:
Q  4 ttcaagtggttactagaagaatgtattggattt 36  Q
    ||||||||| |||||||||||||||||||||||    
T  381863 ttcaagtggctactagaagaatgtattggattt 381895  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 176
Target Start/End: Complemental strand, 8046348 - 8046269
Alignment:
Q  98 tgttgtaaattgtaaggtatctaatactaa-gataatgcacatactaaattttctatatacgtttagtatgggtgttaca 176  Q
    ||||||||||| ||| ||||| | |||||| |||||||||||||||||| |||||| |||||||||||||||||||||||    
T  8046348 tgttgtaaattttaatgtatccagtactaaagataatgcacatactaaactttctagatacgtttagtatgggtgttaca 8046269  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 180
Target Start/End: Original strand, 43517446 - 43517529
Alignment:
Q  98 tgttgtaaattgtaaggtatctaatactaa-gataatgcacatactaaattttctatatacgtttagtatgggtgttacatttg 180  Q
    ||||||||||| ||| ||||| |||||||| | |||||||||| ||||| |||||| |||||||||||||| ||||||||||||    
T  43517446 tgttgtaaattttaatgtatccaatactaaaggtaatgcacatgctaaactttctagatacgtttagtatgagtgttacatttg 43517529  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 178
Target Start/End: Original strand, 10216805 - 10216886
Alignment:
Q  98 tgttgtaaattgtaaggtatctaatactaa-gataatgcacatactaaattttctatatacgtttagtatgggtgttacatt 178  Q
    ||||||||||| ||| ||||  | |||||| |||||||||||| ||||| |||||||||||||||||| |||| ||||||||    
T  10216805 tgttgtaaattttaatgtattcagtactaaagataatgcacatgctaaactttctatatacgtttagtgtgggcgttacatt 10216886  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 24058701 - 24058773
Alignment:
Q  98 tgttgtaaattgtaaggtatctaatactaa-gataatgcacatactaaattttctatatacgtttagtatggg 169  Q
    ||||||||||| ||| ||||| | |||||| |||||||||||  ||||| |||||| ||||||||||| ||||    
T  24058701 tgttgtaaattttaatgtatccagtactaaagataatgcacacgctaaactttctagatacgtttagtgtggg 24058773  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 39887912 - 39887832
Alignment:
Q  98 tgttgtaaattgtaaggtatctaatactaa-gataatgcacatactaaattttctatatacgtttagtatgggtgttacat 177  Q
    ||||||||||| ||| ||||| |||||||| |||||||||||||||||| | |||| ||||||||||| |||| |||||||    
T  39887912 tgttgtaaattttaatgtatccaatactaaagataatgcacatactaaactgtctagatacgtttagtgtgggcgttacat 39887832  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 5602459 - 5602634
Alignment:
Q  1 ggattcaagtggttactagaagaatgtattggatttataagattgttgtatcaaatgtacgaacttatttagatgagtatattta-ttgagattgttgtg 99  Q
    ||||||||||  |||||||||| ||| ||||||| | || ||||| ||||| |||||||||||||| | ||||||   ||||| | ||||   | || ||    
T  5602459 ggattcaagtatttactagaagtatggattggatatctatgattgatgtattaaatgtacgaacttgtatagatgttaatattcagttgaagcttttatg 5602558  T
Q  100 ttgtaaattgtaaggtatctaatactaagataatgcacatactaaattttctatatacgtttagtatgggtgttaca 176  Q
    ||||||||| | | ||| | | |||||||||||  | ||| |||||| ||||| |||||||||||||||||||||||    
T  5602559 ttgtaaatt-ttatgtacccagtactaagataacacccatgctaaatattctagatacgtttagtatgggtgttaca 5602634  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 17148171 - 17148251
Alignment:
Q  98 tgttgtaaattgtaaggtatctaatactaa-gataatgcacatactaaattttctatatacgtttagtatgggtgttacat 177  Q
    ||||||||||| ||| ||||| | |||||| |||||||||||| ||||| |||||| ||||||||||| |||| |||||||    
T  17148171 tgttgtaaattttaatgtatccagtactaaagataatgcacatgctaaactttctagatacgtttagtgtgggcgttacat 17148251  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 11020905 - 11020825
Alignment:
Q  98 tgttgtaaattgtaaggtatctaatact-aagataatgcacatactaaattttctatatacgtttagtatgggtgttacat 177  Q
    ||||| ||||| ||| ||||| | |||| |||||||||||||||||||| |||||| ||||||||||| |||  |||||||    
T  11020905 tgttgcaaattttaatgtatccagtactcaagataatgcacatactaaactttctagatacgtttagtgtggacgttacat 11020825  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 254
Target Start/End: Original strand, 20920684 - 20920780
Alignment:
Q  159 tttagtatgggtgttacatttggtatcagag-aaggttgactaagatcgtgccatgggtcattagatttcaactaacgtagtggagccattgggttc 254  Q
    |||||||||| ||||||||||||||||||||   |||||| | |||||||| | ||| ||||||||  ||||| || |||||||  |||||||||||    
T  20920684 tttagtatggatgttacatttggtatcagagtctggttgattcagatcgtgtcctggatcattagaaatcaacgaatgtagtgggaccattgggttc 20920780  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 21493078 - 21492998
Alignment:
Q  98 tgttgtaaattgtaaggtatctaatactaagataatgcacatactaaattttctatatacgtttagtatgggtgttacattt 179  Q
    ||||||||||| ||| ||||| | ||||||| |||||||||| ||||| |||||| ||| |||||||||||| |||||||||    
T  21493078 tgttgtaaatt-taatgtatccagtactaagttaatgcacatgctaaactttctacatatgtttagtatgggcgttacattt 21492998  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 19078991 - 19079065
Alignment:
Q  105 aattgtaaggtatctaatactaagataatgcacatactaaattttctatatacgtttagtatgggtgttacattt 179  Q
    |||| ||| ||||| | ||||||| ||| |||||| |||||| ||||| |||  |||||||||||||||||||||    
T  19078991 aattttaatgtatccagtactaagttaacgcacatgctaaatattctagataaatttagtatgggtgttacattt 19079065  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 19079235 - 19079309
Alignment:
Q  105 aattgtaaggtatctaatactaagataatgcacatactaaattttctatatacgtttagtatgggtgttacattt 179  Q
    |||| ||| ||||| | ||||||| ||| |||||| |||||| ||||| |||  |||||||||||||||||||||    
T  19079235 aattttaatgtatccagtactaagttaacgcacatgctaaatattctagataaatttagtatgggtgttacattt 19079309  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 24716117 - 24716181
Alignment:
Q  98 tgttgtaaattgtaaggtatctaatactaagataatgcacatactaaattttctatatacgttta 162  Q
    ||||||||||| ||| ||||||| ||||||| |||||||||| ||||| |||||| |||||||||    
T  24716117 tgttgtaaattttaatgtatctagtactaagttaatgcacatgctaaactttctaaatacgttta 24716181  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 23808586 - 23808665
Alignment:
Q  98 tgttgtaaattgtaaggtatctaatactaa-gataatgcacatactaaattttctatatacgtttagtatgggtgttaca 176  Q
    ||||||||||| ||| ||||| | |||||| |||||||| ||| ||||| |||||| ||||||||||| |||| ||||||    
T  23808586 tgttgtaaattttaatgtatccagtactaaagataatgcgcatgctaaaatttctagatacgtttagtgtgggcgttaca 23808665  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 30612921 - 30612843
Alignment:
Q  99 gttgtaaattgtaaggtatctaatactaa-gataatgcacatactaaattttctatatacgtttagtatgggtgttaca 176  Q
    |||||||||| ||| |||||  ||||||| |||||||||| | ||||| |||||| ||||||||||| |||| ||||||    
T  30612921 gttgtaaattttaatgtatccgatactaaagataatgcacgtgctaaactttctagatacgtttagtgtgggcgttaca 30612843  T

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Target: scaffold0627 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 1900 - 1951
Alignment:
Q  126 aagataatgcacatactaaattttctatatacgtttagtatgggtgttacat 177  Q
    |||||||||||||| ||||| |||||| | ||||||||||||||||||||||    
T  1900 aagataatgcacatgctaaactttctagaaacgtttagtatgggtgttacat 1951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 12667 - 12595
Alignment:
Q  98 tgttgtaaattgtaaggtatctaatactaa-gataatgcacatactaaattttctatatacgtttagtatggg 169  Q
    ||||||||||| ||| ||||| | |||||| |||||||||||| ||||| |||||| ||||||||||| ||||    
T  12667 tgttgtaaattttaatgtatccagtactaaagataatgcacatgctaaactttctagatacgtttagtgtggg 12595  T

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Target: scaffold0240 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 10055 - 10134
Alignment:
Q  98 tgttgtaaattgtaaggtatctaatactaa-gataatgcacatactaaattttctatatacgtttagtatgggtgttaca 176  Q
    ||||||||||| ||| ||||| | |||||| |||||||||||| ||||| ||| || ||||||||||| ||| |||||||    
T  10055 tgttgtaaattttaatgtatccagtactaaagataatgcacatgctaaactttttagatacgtttagtgtggctgttaca 10134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 24732 - 24799
Alignment:
Q  98 tgttgtaaattgtaaggtatctaatactaa-gataatgcacatactaaattttctatatacgtttagt 164  Q
    ||||| ||||| ||| ||||||| |||||| ||||||||||||| |||| |||||| |||||||||||    
T  24732 tgttgcaaattttaatgtatctattactaaagataatgcacatattaaactttctagatacgtttagt 24799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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