View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17673_low_15 (Length: 254)

Name: NF17673_low_15
Description: NF17673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17673_low_15
NF17673_low_15
[»] chr3 (31 HSPs)
chr3 (13-254)||(3745846-3746087)
chr3 (33-238)||(3754458-3754663)
chr3 (36-243)||(4157927-4158137)
chr3 (33-241)||(4142119-4142330)
chr3 (43-240)||(2678385-2678582)
chr3 (45-239)||(2686299-2686496)
chr3 (131-227)||(2696731-2696827)
chr3 (132-227)||(803217-803312)
chr3 (133-248)||(2459233-2459348)
chr3 (179-226)||(2631361-2631408)
chr3 (137-227)||(956343-956433)
chr3 (179-237)||(2644351-2644409)
chr3 (179-237)||(2659141-2659199)
chr3 (137-234)||(1007423-1007520)
chr3 (137-234)||(1022451-1022548)
chr3 (134-226)||(1891064-1891156)
chr3 (138-241)||(989359-989462)
chr3 (137-240)||(7432040-7432143)
chr3 (179-226)||(37753345-37753392)
chr3 (133-178)||(12133037-12133082)
chr3 (179-224)||(13498228-13498273)
chr3 (179-226)||(754609-754656)
chr3 (179-226)||(2492086-2492133)
chr3 (133-239)||(968629-968735)
chr3 (168-234)||(1940571-1940637)
chr3 (179-241)||(9587170-9587232)
chr3 (165-222)||(997566-997623)
chr3 (165-222)||(1013956-1014013)
chr3 (133-234)||(1936972-1937073)
chr3 (179-224)||(9561987-9562032)
chr3 (179-227)||(2442043-2442091)
[»] chr5 (13 HSPs)
chr5 (33-241)||(11081668-11081879)
chr5 (38-240)||(1427679-1427881)
chr5 (165-234)||(23766854-23766923)
chr5 (165-234)||(23816702-23816771)
chr5 (137-238)||(23861014-23861115)
chr5 (179-224)||(20301447-20301492)
chr5 (173-238)||(23769634-23769699)
chr5 (173-238)||(23819482-23819547)
chr5 (171-225)||(3181713-3181767)
chr5 (179-224)||(20292999-20293044)
chr5 (173-238)||(23732165-23732230)
chr5 (173-238)||(23764248-23764313)
chr5 (173-238)||(23814081-23814146)
[»] chr7 (1 HSPs)
chr7 (41-178)||(1078226-1078363)
[»] chr1 (2 HSPs)
chr1 (174-241)||(51381440-51381507)
chr1 (187-227)||(25609376-25609416)
[»] chr4 (3 HSPs)
chr4 (133-227)||(20019771-20019865)
chr4 (179-227)||(20016184-20016232)
chr4 (165-246)||(22672107-22672188)
[»] scaffold0044 (1 HSPs)
scaffold0044 (174-226)||(89142-89194)
[»] chr8 (1 HSPs)
chr8 (165-241)||(19727871-19727947)
[»] chr2 (2 HSPs)
chr2 (179-227)||(36577370-36577418)
chr2 (174-226)||(33038159-33038211)
[»] chr6 (2 HSPs)
chr6 (187-227)||(19119075-19119115)
chr6 (187-227)||(19126369-19126409)


Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 3745846 - 3746087
Alignment:
Q  13 aaaataaaatcgggtagggtatgtccatgctttattgtttcttttgatttggcaaaggagacttttcaaaagatttcacctcctagtattggaggggtag 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3745846 aaaataaaatcgggtagggtatgtccatgctttattgtttcttttgatttggcaaaggagacttttcaaaagatttcacctcctagtattggagggatag 3745945  T
Q  113 atgtgtgtgacttgtcgtctttgggtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3745946 atgtgtgtgacttgtcgtctttgggtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtc 3746045  T
Q  213 ttggactaaattgttgactattccttacaagccagaaccaac 254  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3746046 ttggactaaattgttgactattccttacaagccagaaccaac 3746087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 33 - 238
Target Start/End: Original strand, 3754458 - 3754663
Alignment:
Q  33 atgtccatgctttattgtttcttttgatttggcaaaggagacttttcaaaagatttcacctcctagtattggaggggtagatgtgtgtgacttgtcgtct 132  Q
    ||||||| |||||||||||||||||||||||||||||||| | | |||||||||||||||||||| | | |||||||| |||||||||||| ||||| ||    
T  3754458 atgtccacgctttattgtttcttttgatttggcaaaggagtcatatcaaaagatttcacctcctaatttgggaggggtggatgtgtgtgacatgtcggct 3754557  T
Q  133 ttgggtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgacta 232  Q
    ||| ||||||| |||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| |||  |||||||||||||||||||||| ||||    
T  3754558 ttgagtgttttgagggattgcttgtgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattgtttacta 3754657  T
Q  233 ttcctt 238  Q
    ||||||    
T  3754658 ttcctt 3754663  T

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Target: chr3; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 36 - 243
Target Start/End: Complemental strand, 4158137 - 4157927
Alignment:
Q  36 tccatgctttattgtttcttttgatttggcaaaggagacttttcaaaagatttcacctcctagtattggaggggtagatgtgtgtgacttgtcgtctttg 135  Q
    |||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||| | | |||||||| |||||||||||||||||| |||||    
T  4158137 tccatgctttattgtttcatttgatttggcaaaggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgtgtgtgacttgtcggctttg 4158038  T
Q  136 ggtgttttaagggattgcttgtgcgtg---acttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgacta 232  Q
    |||||||| ||||||||||||||||||   ||||||||| ||||| ||||| ||||||||||||||| |||  |||||||||||||||||||||| ||||    
T  4158037 ggtgttttgagggattgcttgtgcgtgaccacttctggttatgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcacta 4157938  T
Q  233 ttccttacaag 243  Q
    |  ||||||||    
T  4157937 tctcttacaag 4157927  T

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Target: chr3; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 33 - 241
Target Start/End: Complemental strand, 4142330 - 4142119
Alignment:
Q  33 atgtccatgctttattgtttcttttgatttggcaaaggagacttttcaaaagatttcacctcctagtattggaggggtagatgtgtgtgacttgtcgtct 132  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| | | |||||||| |||||  |||||||||||  |    
T  4142330 atgtccatgctttattgtttcttttgatttggcaaaggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgttggtgacttgtcggtt 4142231  T
Q  133 ttgggtgttttaagggattgcttgtgcgt---gacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttga 229  Q
    ||||||||||| |||||||||||||||||   |||||||||  ||||| ||||| ||||||||||||||| |||  |||||||||||||||||||||| |    
T  4142230 ttgggtgttttgagggattgcttgtgcgtgacgacttctggctatgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttca 4142131  T
Q  230 ctattccttaca 241  Q
    ||||||||||||    
T  4142130 ctattccttaca 4142119  T

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Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 43 - 240
Target Start/End: Complemental strand, 2678582 - 2678385
Alignment:
Q  43 tttattgtttcttttgatttggcaaaggagacttttcaaaagatttcacctcctagtattggaggggtagatgtgtgtgacttgtcgtctttgggtgttt 142  Q
    |||||||||||||||||||||||||| ||| ||| ||||||| | ||||||||||||  |||||||| | ||||| || |  || |  | ||||||||||    
T  2678582 tttattgtttcttttgatttggcaaaagagtcttatcaaaagctatcacctcctagttatggaggggcaaatgtgggtaaaatgcctaccttgggtgttt 2678483  T
Q  143 taagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattccttac 240  Q
    | | ||||||||||||| |||||| |||||||||| ||||| |||||||  |||||| |||  ||||||| |||||||||||||| ||||||||||||    
T  2678482 tgaaggattgcttgtgcttgacttgtggtgatgatgtttgggttatgaaacaatatggaaaaaaagagtcatggactaaattgttcactattccttac 2678385  T

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Target: chr3; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 45 - 239
Target Start/End: Complemental strand, 2686496 - 2686299
Alignment:
Q  45 tattgtttcttttgatttggcaaaggagacttttcaaaagatttcacctcctagtattggaggggtagatgtgtgtgacttgtcgtctttgggtgtttta 144  Q
    |||||||||||||||||||||||| ||| ||| ||||||||| || |||||||||  ||||||||||||||| ||| || ||    | |||||||||||     
T  2686496 tattgtttcttttgatttggcaaaagagtcttatcaaaagatatcccctcctagttatggaggggtagatgtctgtaacatgcttaccttgggtgttttg 2686397  T
Q  145 agggattgcttgtgcgtgacttctggtgatgatatttgg---attatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattcctta 239  Q
    |||||||| |||||| |||  | |||||||||| |||||   |||||||||||||||| |||  |||||||||||| ||||||||| |||||||||||    
T  2686396 agggattgtttgtgcttgatctgtggtgatgatgtttgggttattatgaaggaatatggaaaaaaagagtcttggaataaattgttcactattcctta 2686299  T

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Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 227
Target Start/End: Complemental strand, 2696827 - 2696731
Alignment:
Q  131 ctttgggtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgtt 227  Q
    |||||||||| ||||||||||||||| || ||| ||| | | ||||| ||||||||||||||||||||| |||  |||||||||||| |||||||||    
T  2696827 ctttgggtgtgttaagggattgcttgggcttgatttccgatcatgatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgtt 2696731  T

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Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 227
Target Start/End: Complemental strand, 803312 - 803217
Alignment:
Q  132 tttgggtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgtt 227  Q
    ||||||| | || ||||||||||||||| ||| ||||||||||||| ||||| ||||||| ||||||| |||  |||||||||||||||| |||||    
T  803312 tttgggtatgttgagggattgcttgtgcatgatttctggtgatgatgtttgggttatgaaagaatatggaaataaagagtcttggactaagttgtt 803217  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 248
Target Start/End: Original strand, 2459233 - 2459348
Alignment:
Q  133 ttgggtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgacta 232  Q
    |||||||| || || |||||||||| | | | ||||||| ||| | ||||||||||||||||||||| |||  ||||||||||||| |||||||| ||      
T  2459233 ttgggtgtattgagtgattgcttgtccataatttctggtcatgttgtttggattatgaaggaatatggaaataaagagtcttggacaaaattgtttaccg 2459332  T
Q  233 ttccttacaagccaga 248  Q
    || |||||| ||||||    
T  2459333 tttcttacatgccaga 2459348  T

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Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 2631361 - 2631408
Alignment:
Q  179 tttggattatgaaggaatatgcaaagcaagagtcttggactaaattgt 226  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  2631361 tttggattatgaaggaatatggaaatcaagagtcttggactaaattgt 2631408  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 956343 - 956433
Alignment:
Q  137 gtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgtt 227  Q
    ||||||| ||||||||||||||| ||| || ||||   ||| ||||||||||||||||||||| |||  |||||||||||  |||||||||    
T  956343 gtgttttcagggattgcttgtgcatgatttttggttgcgatgtttggattatgaaggaatatggaaaaaaagagtcttggcataaattgtt 956433  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 2644409 - 2644351
Alignment:
Q  179 tttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattcct 237  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||||||  |||||||||    
T  2644409 tttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacactattcct 2644351  T

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Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 2659199 - 2659141
Alignment:
Q  179 tttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattcct 237  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||||||  |||||||||    
T  2659199 tttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacactattcct 2659141  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 234
Target Start/End: Original strand, 1007423 - 1007520
Alignment:
Q  137 gtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactatt 234  Q
    ||||||| ||||||||||||  ||||  || |||||||||| ||||| | ||||||||||||| |||  | ||||| |||||||||||||| ||||||    
T  1007423 gtgtttttagggattgcttgaccgtgttttgtggtgatgatgtttgggtaatgaaggaatatggaaataacgagtcctggactaaattgttcactatt 1007520  T

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Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 234
Target Start/End: Original strand, 1022451 - 1022548
Alignment:
Q  137 gtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactatt 234  Q
    ||||||| ||||||||||||  ||||  || |||||||||| ||||| | ||||||||||||| |||  | ||||| |||||||||||||| ||||||    
T  1022451 gtgtttttagggattgcttgaccgtgttttgtggtgatgatgtttgggtaatgaaggaatatggaaataacgagtcatggactaaattgttcactatt 1022548  T

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Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 226
Target Start/End: Complemental strand, 1891156 - 1891064
Alignment:
Q  134 tgggtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgt 226  Q
    ||||||| || |||||||| |||||| ||  || |||| ||||| ||||||||||||||||| ||| |||  |||| ||||||||||||||||    
T  1891156 tgggtgtgttgagggattgtttgtgcctggtttttggtcatgatgtttggattatgaaggaacatggaaataaagactcttggactaaattgt 1891064  T

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Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 241
Target Start/End: Original strand, 989359 - 989462
Alignment:
Q  138 tgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattcct 237  Q
    |||||| || |||||||||||| |   ||||||||||||| ||||| | ||||| || || | |||  |||||||||||||||||||||| |||||| ||    
T  989359 tgttttgagagattgcttgtgcattttttctggtgatgatgtttgggtaatgaaagagtacggaaataaagagtcttggactaaattgttcactatttct 989458  T
Q  238 taca 241  Q
    ||||    
T  989459 taca 989462  T

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Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 240
Target Start/End: Complemental strand, 7432143 - 7432040
Alignment:
Q  137 gtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattcc 236  Q
    |||| |||||||||||||||||| |   | ||||| ||||| |||||| |||||||||||||| |||  |||| || |||||||||||||| || ||| |    
T  7432143 gtgtattaagggattgcttgtgcatccttgctggtcatgatgtttggagtatgaaggaatatggaaataaagaatcgtggactaaattgttcaccatttc 7432044  T
Q  237 ttac 240  Q
    ||||    
T  7432043 ttac 7432040  T

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Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 37753392 - 37753345
Alignment:
Q  179 tttggattatgaaggaatatgcaaagcaagagtcttggactaaattgt 226  Q
    ||||||||||| ||||||||| |||| |||||||||||||||||||||    
T  37753392 tttggattatggaggaatatggaaagaaagagtcttggactaaattgt 37753345  T

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Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 12133037 - 12133082
Alignment:
Q  133 ttgggtgttttaagggattgcttgtgcgtgacttctggtgatgata 178  Q
    |||||||| |||||||||||||||||| |||||||| |||||||||    
T  12133037 ttgggtgtgttaagggattgcttgtgcctgacttctcgtgatgata 12133082  T

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Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 13498228 - 13498273
Alignment:
Q  179 tttggattatgaaggaatatgcaaagcaagagtcttggactaaatt 224  Q
    ||||||||||||||||||||| |||  |||||||||||||||||||    
T  13498228 tttggattatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

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Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 754656 - 754609
Alignment:
Q  179 tttggattatgaaggaatatgcaaagcaagagtcttggactaaattgt 226  Q
    |||||||||||||||| |||| | | ||||||||||||||||||||||    
T  754656 tttggattatgaaggagtatggagatcaagagtcttggactaaattgt 754609  T

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Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 2492086 - 2492133
Alignment:
Q  179 tttggattatgaaggaatatgcaaagcaagagtcttggactaaattgt 226  Q
    |||||||||||||||| |||| ||| | ||||||||||||||||||||    
T  2492086 tttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 2492133  T

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Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 968629 - 968735
Alignment:
Q  133 ttgggtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgacta 232  Q
    |||||||| || |||||||| |||||| ||| |   ||| ||||| ||||| ||||||||||| ||| |||  ||||||| ||||||||||| || ||||    
T  968629 ttgggtgtgttgagggattgtttgtgcatgattatcggtcatgatgtttgggttatgaaggaacatggaaataaagagtcatggactaaattattcacta 968728  T
Q  233 ttcctta 239  Q
    || ||||    
T  968729 tttctta 968735  T

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Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 1940637 - 1940571
Alignment:
Q  168 tggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactatt 234  Q
    |||| ||||| ||||| ||||||||||| ||| ||| ||||| || |||||||||||||| ||||||    
T  1940637 tggtcatgatgtttgggttatgaaggaacatggaaatcaagactcgtggactaaattgttcactatt 1940571  T

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Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 9587232 - 9587170
Alignment:
Q  179 tttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattccttaca 241  Q
    ||||||||||||||||||||| |||  ||||| ||||||| |||||||  | |||||||||||    
T  9587232 tttggattatgaaggaatatggaaataaagagccttggacaaaattgtacaatattccttaca 9587170  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 997566 - 997623
Alignment:
Q  165 ttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaa 222  Q
    ||||||||||| | ||||| | ||||||||||||| |||  |||||||||||||||||    
T  997566 ttctggtgatgttgtttgggtaatgaaggaatatggaaataaagagtcttggactaaa 997623  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 1013956 - 1014013
Alignment:
Q  165 ttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaa 222  Q
    ||||||||||| | ||||| | ||||||||||||| |||  |||||||||||||||||    
T  1013956 ttctggtgatgttgtttgggtaatgaaggaatatggaaataaagagtcttggactaaa 1014013  T

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Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 234
Target Start/End: Complemental strand, 1937073 - 1936972
Alignment:
Q  133 ttgggtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgacta 232  Q
    |||||||| || |||||||| |||||| ||  || |||| ||||| ||||| ||||||||||||||  |||  |||| || ||| |||||||||| ||||    
T  1937073 ttgggtgtgttgagggattgtttgtgcatggtttttggttatgatgtttgggttatgaaggaatataaaaataaagaatcctggtctaaattgttcacta 1936974  T
Q  233 tt 234  Q
    ||    
T  1936973 tt 1936972  T

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Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 9562032 - 9561987
Alignment:
Q  179 tttggattatgaaggaatatgcaaagcaagagtcttggactaaatt 224  Q
    ||||||||||||| || |||| ||| ||||||||||||||||||||    
T  9562032 tttggattatgaatgagtatggaaatcaagagtcttggactaaatt 9561987  T

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Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 2442043 - 2442091
Alignment:
Q  179 tttggattatgaaggaatatgcaaagcaagagtcttggactaaattgtt 227  Q
    |||||||||||||||| |||| |||  |||| |||||||||||||||||    
T  2442043 tttggattatgaaggagtatggaaataaagattcttggactaaattgtt 2442091  T

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Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 33 - 241
Target Start/End: Original strand, 11081668 - 11081879
Alignment:
Q  33 atgtccatgctttattgtttcttttgatttggcaaaggagacttttcaaaagatttcacctcctagtattggaggggtagatgtgtgtgacttgtcgtct 132  Q
    ||||||| |||||||||||| ||| ||||||||||||||| ||| |||||||||||||||||||| | | | |||||| |||||| || |||||||| ||    
T  11081668 atgtccacgctttattgtttgtttcgatttggcaaaggagtcttatcaaaagatttcacctcctaatttggaaggggtggatgtgcgtaacttgtcggct 11081767  T
Q  133 ttgggtgttttaagggattgcttgtgcgt---gacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttga 229  Q
    ||||||||||| |||||||||||||| ||   |||| || |||||||| ||||| |||||||||| |||| |||  |||||||||||||||||||||| |    
T  11081768 ttgggtgttttgagggattgcttgtgtgtgacgactactagtgatgatgtttgggttatgaaggagtatggaaataaagagtcttggactaaattgttta 11081867  T
Q  230 ctattccttaca 241  Q
    ||||||||||||    
T  11081868 ctattccttaca 11081879  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 240
Target Start/End: Complemental strand, 1427881 - 1427679
Alignment:
Q  38 catgctttattgtttcttttgatttggcaaaggagacttttcaaaagatttcacctcctagtattggaggggtagatgtgtgtgacttgtcgtctttggg 137  Q
    |||||||||||||| ||||||||||||  |||||| ||| ||||||| |||  | ||| | |  |||||| ||||||||| ||| ||| ||| | |||||    
T  1427881 catgctttattgttgcttttgatttggggaaggagtcttatcaaaaggttttgcttccaaatcgtggaggagtagatgtgagtggcttctcgaccttggg 1427782  T
Q  138 tgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattcct 237  Q
    |||| |||||| || ||||| | || ||| |||||||||| ||||| ||||||| || |||| |||   ||||||||||| |||| |||| || ||| ||    
T  1427781 tgttctaaggggtttcttgtccttgtcttatggtgatgatgtttgggttatgaaagagtatggaaatacagagtcttggattaaactgttcacaatttct 1427682  T
Q  238 tac 240  Q
    |||    
T  1427681 tac 1427679  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 23766923 - 23766854
Alignment:
Q  165 ttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactatt 234  Q
    ||||||| ||||| ||||||||||||| ||||||| |||  |||||||||||||||||||||| ||||||    
T  23766923 ttctggtaatgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgttcactatt 23766854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 23816771 - 23816702
Alignment:
Q  165 ttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactatt 234  Q
    ||||||| ||||| ||||||||||||| ||||||| |||  |||||||||||||||||||||| ||||||    
T  23816771 ttctggtaatgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgttcactatt 23816702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 23861115 - 23861014
Alignment:
Q  137 gtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattcc 236  Q
    ||||||| ||| |||| ||||||  || |||| || ||||| ||||||| |||||||||||||  | | ||| |||||||||||||||||| ||||||||    
T  23861115 gtgttttcaggaattgtttgtgctggatttctagtaatgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcc 23861016  T
Q  237 tt 238  Q
    ||    
T  23861015 tt 23861014  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 20301447 - 20301492
Alignment:
Q  179 tttggattatgaaggaatatgcaaagcaagagtcttggactaaatt 224  Q
    ||||||||||||||||||||||||   |||||||||||||||||||    
T  20301447 tttggattatgaaggaatatgcaattaaagagtcttggactaaatt 20301492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 23769699 - 23769634
Alignment:
Q  173 atgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattcctt 238  Q
    ||||| |||||||||||||||||||||  ||  ||| |||||||||||||||||| ||||| ||||    
T  23769699 atgatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttcactatacctt 23769634  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 23819547 - 23819482
Alignment:
Q  173 atgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattcctt 238  Q
    ||||| |||||||||||||||||||||  ||  ||| |||||||||||||||||| ||||| ||||    
T  23819547 atgatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttcactatacctt 23819482  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 3181713 - 3181767
Alignment:
Q  171 tgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattg 225  Q
    ||||||| ||||| ||||||||||||||| |||  |||||||||||| |||||||    
T  3181713 tgatgatgtttggcttatgaaggaatatggaaatgaagagtcttggattaaattg 3181767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 20292999 - 20293044
Alignment:
Q  179 tttggattatgaaggaatatgcaaagcaagagtcttggactaaatt 224  Q
    ||||||||||||||||||||| ||   |||||||||||||||||||    
T  20292999 tttggattatgaaggaatatggaattaaagagtcttggactaaatt 20293044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 23732165 - 23732230
Alignment:
Q  173 atgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattcctt 238  Q
    ||||| |||||||||||||||||||||  ||  ||| |||||||| |||| |||| ||||||||||    
T  23732165 atgatgtttggattatgaaggaatatgggaataaagcgtcttggaataaactgttcactattcctt 23732230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 23764313 - 23764248
Alignment:
Q  173 atgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattcctt 238  Q
    ||||| ||||||| |||||||||||||  | | ||| ||||||||||| |||||| ||||||||||    
T  23764313 atgatgtttggataatgaaggaatatgggatgaaagcgtcttggactacattgttcactattcctt 23764248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 23814146 - 23814081
Alignment:
Q  173 atgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattcctt 238  Q
    ||||| ||||||| |||||||||||||  | |  || |||||||||||||||||| ||||||||||    
T  23814146 atgatgtttggataatgaaggaatatgggatgacagcgtcttggactaaattgttcactattcctt 23814081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 178
Target Start/End: Complemental strand, 1078363 - 1078226
Alignment:
Q  41 gctttattgtttcttttgatttggcaaaggagacttttcaaaagatttcacctcctagtattggaggggtagatgtgtgtgacttgtcgtctttgggtgt 140  Q
    |||||||||||||||||||||||| ||| ||  ||| ||||||| |||  ||||||  |  ||||||||||||||||||| |||| |   | ||||||||    
T  1078363 gctttattgtttcttttgatttgggaaaagaatcttatcaaaaggttttgcctcctgattatggaggggtagatgtgtgtcacttcttagccttgggtgt 1078264  T
Q  141 tttaagggattgcttgtgcgtgacttctggtgatgata 178  Q
     || ||||||||||||||| || ||||| |||||||||    
T  1078263 gttgagggattgcttgtgcctggcttctcgtgatgata 1078226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 51381507 - 51381440
Alignment:
Q  174 tgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattccttaca 241  Q
    |||||||||||||||||| ||||||| |||  |||||||||||||||||||||| | |||||||||||    
T  51381507 tgatatttggattatgaaagaatatggaaatgaagagtcttggactaaattgttcagtattccttaca 51381440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 25609416 - 25609376
Alignment:
Q  187 atgaaggaatatgcaaagcaagagtcttggactaaattgtt 227  Q
    ||||||||||||| ||  |||||||||||||||||||||||    
T  25609416 atgaaggaatatgaaattcaagagtcttggactaaattgtt 25609376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 227
Target Start/End: Complemental strand, 20019865 - 20019771
Alignment:
Q  133 ttgggtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgtt 227  Q
    |||||||| ||||| |||| ||||||| | | ||||||| ||||| ||||| | ||||||||||||| ||  |||||||||||||||||||||||    
T  20019865 ttgggtgtgttaagagatttcttgtgcataatttctggtaatgatgtttgggtcatgaaggaatatggaattcaagagtcttggactaaattgtt 20019771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 20016232 - 20016184
Alignment:
Q  179 tttggattatgaaggaatatgcaaagcaagagtcttggactaaattgtt 227  Q
    ||||||| ||||||||||||| ||  |||||||||||||||||||||||    
T  20016232 tttggatcatgaaggaatatggaattcaagagtcttggactaaattgtt 20016184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 246
Target Start/End: Complemental strand, 22672188 - 22672107
Alignment:
Q  165 ttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattccttacaagcca 246  Q
    ||||||||| ||  ||||| | ||||||||||||| |||  | || ||||||||||||||||| |||||| |||||| ||||    
T  22672188 ttctggtgacgacgtttgggtaatgaaggaatatggaaataaggaatcttggactaaattgttcactatttcttacatgcca 22672107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 89142 - 89194
Alignment:
Q  174 tgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgt 226  Q
    |||||||||| ||||||||||||||| |||  |||||||||||||||||||||    
T  89142 tgatatttgggttatgaaggaatatggaaataaagagtcttggactaaattgt 89194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 19727871 - 19727947
Alignment:
Q  165 ttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgactattccttaca 241  Q
    ||||||||||||| ||||| ||||||  |||||||||||  ||||||| ||||||||| |||| |||||| ||||||    
T  19727871 ttctggtgatgatgtttgggttatgacagaatatgcaaataaagagtcatggactaaactgttcactatttcttaca 19727947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 36577370 - 36577418
Alignment:
Q  179 tttggattatgaaggaatatgcaaagcaagagtcttggactaaattgtt 227  Q
    ||||||||||||||||||||| |||  |||||||||||| |||||||||    
T  36577370 tttggattatgaaggaatatggaaataaagagtcttggattaaattgtt 36577418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 33038159 - 33038211
Alignment:
Q  174 tgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgt 226  Q
    |||| ||||||||||||||||||||| |||  || |||||||||||| |||||    
T  33038159 tgatgtttggattatgaaggaatatggaaacaaaaagtcttggactagattgt 33038211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 19119075 - 19119115
Alignment:
Q  187 atgaaggaatatgcaaagcaagagtcttggactaaattgtt 227  Q
    ||||||||||||| |||  ||||||||||||||||||||||    
T  19119075 atgaaggaatatggaaatgaagagtcttggactaaattgtt 19119115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 19126369 - 19126409
Alignment:
Q  187 atgaaggaatatgcaaagcaagagtcttggactaaattgtt 227  Q
    ||||||||||||| |||  ||||||||||||||||||||||    
T  19126369 atgaaggaatatggaaatgaagagtcttggactaaattgtt 19126409  T

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