View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17673_low_17 (Length: 250)
Name: NF17673_low_17
Description: NF17673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17673_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 30820254 - 30820488
Alignment:
| Q |
1 |
ctgttcatggccatggccacctaacttctgactaattggccatacagggttgagagaagtttgatggccagaggccgtgaaccgtgaacatttcctccca |
100 |
Q |
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| T |
30820254 |
ctgttcatggccctagccacctaacttctgactaattgactgtacagggttgagagaagtttgatggccagagtc-gtgaatcgtgaacatttcctccca |
30820352 |
T |
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| Q |
101 |
aatatgtctatcatacatgattttgatcaccaaacttcaaaataattggctacacaatcctaatagaagtttgatgaccaaaatcaatgttatgacaaac |
200 |
Q |
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| T |
30820353 |
aacatgtccatcatacatgattttgatcaccatacttcaaaataaagggc-ccacaagcctaatagaagtttgatgaccacaatcaatg-tatgacaaac |
30820450 |
T |
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| Q |
201 |
atacttaacaaggttattattgatatgccatgtatttt |
238 |
Q |
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| T |
30820451 |
atacttagaaaggttattagtgatatgccatgtatttt |
30820488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 30815048 - 30815282
Alignment:
| Q |
1 |
ctgttcatggccatggccacctaacttctgactaattggccatacagggttgagagaagtttgatggccagaggccgtgaaccgtgaacatttcctccca |
100 |
Q |
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| T |
30815048 |
ctgttcatggtcctggccacctaacttcagacaaattagccaaatagggtt-agagaagtttgagggccagagatgatggatactaaacttttc-tcaca |
30815145 |
T |
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| Q |
101 |
aatatgtctatcatacatgattttgatcaccaaacttcaaaataattggctacacaatcctaatagaagtttgatgaccaaaatcaatgttatgacaaac |
200 |
Q |
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| T |
30815146 |
aatatgtccatcatacatgattttgatcaccatacttcaaaataaatggctt-acaagcctaatagaagtttgatgaccacaatcaatgttatgacaaag |
30815244 |
T |
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| Q |
201 |
atacttaacaaggttattattgatatgccatgtatttt |
238 |
Q |
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| T |
30815245 |
agacttagcaaggttattagtgatatgtcatgtatttt |
30815282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 57 - 227
Target Start/End: Original strand, 30811346 - 30811513
Alignment:
| Q |
57 |
aagtttgatggccagaggccgtgaaccgtgaacatttcctcccaaatatgtctatcatacatgattttgatcaccaaacttcaaaataattggctacaca |
156 |
Q |
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|||||||||||||| ||| ||||| ||||||||||||||| ||||||||| | ||||||||| |||| |||||||||||||||||| ||| |||| |
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| T |
30811346 |
aagtttgatggccacaggttgtgaatagtgaacatttcctccaaaatatgtccttgttacatgattgtgattaccaaacttcaaaataataagctgcaca |
30811445 |
T |
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| Q |
157 |
atcctaatagaagtttgatgaccaaaatcaatgttatgacaaacatacttaacaaggttattattgatatg |
227 |
Q |
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| T |
30811446 |
agcctaatagaagtttgatgaccaaaattaatg---tgacaaacttacttagcaaggttattagtgatatg |
30811513 |
T |
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