View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17673_low_18 (Length: 243)

Name: NF17673_low_18
Description: NF17673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17673_low_18
NF17673_low_18
[»] chr2 (7 HSPs)
chr2 (10-224)||(410444-410658)
chr2 (44-224)||(821334-821514)
chr2 (56-165)||(973735-973844)
chr2 (56-200)||(965135-965279)
chr2 (44-222)||(1403734-1403912)
chr2 (16-224)||(1399988-1400193)
chr2 (44-155)||(957815-957926)
[»] chr3 (1 HSPs)
chr3 (43-224)||(45810148-45810329)
[»] chr5 (1 HSPs)
chr5 (49-166)||(36199331-36199445)
[»] chr7 (2 HSPs)
chr7 (44-223)||(12105508-12105687)
chr7 (51-165)||(28449506-28449617)
[»] chr6 (1 HSPs)
chr6 (49-224)||(10116415-10116590)
[»] chr1 (1 HSPs)
chr1 (114-224)||(48675122-48675232)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 410444 - 410658
Alignment:
Q  10 aagaatattgggtggattccgaatttgtttcaccttgcttttcattaaaccttacaacttgcattattcgggacttcgcatttgcaggcctacaacattg 109  Q
    ||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  410444 aagaaaattgggtggattccgaatttgttccaccttgcttttcgttaaaccttacaacttgcactattcgggacttcgcatttgcaggcctacaacattg 410543  T
Q  110 tcacattatgttagcaaaatttattctaaagaatgcaagagttttacgaactatgactatcttgtgcaacaagaaacagtctaaagtagaaagactatta 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  410544 tcacattatgttagcaaaatttattctaaagaatgcaagagttttacgaactatgactatcttgtgcaacaagaaacagtctaaagtagaaagactatta 410643  T
Q  210 tcctcatgtccaagg 224  Q
    |||||||||||||||    
T  410644 tcctcatgtccaagg 410658  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 224
Target Start/End: Original strand, 821334 - 821514
Alignment:
Q  44 ttgcttttcattaaaccttacaacttgcattattcgggacttcgcatttgcaggcctacaacattgtcacattatgttagcaaaatttattctaaagaat 143  Q
    |||| |||||||||||||||||||||||| ||| |||||||| ||| ||||||||| ||||  |  ||||||||||||||||| ||||||||| ||||||    
T  821334 ttgcgtttcattaaaccttacaacttgcactatgcgggactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaat 821433  T
Q  144 gcaagagttttacgaactatgactatcttgtgcaacaagaaacagtctaaagtagaaagactattatcctcatgtccaagg 224  Q
    || |||||||||  ||||||||| |||| | ||||||| ||||| ||| || ||||||| | ||||||  |||| ||||||    
T  821434 gcgagagttttagaaactatgacaatctggagcaacaataaacaatctgaaatagaaagtcgattatctccatgcccaagg 821514  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 165
Target Start/End: Complemental strand, 973844 - 973735
Alignment:
Q  56 aaaccttacaacttgcattattcgggacttcgcatttgcaggcctacaacattgtcacattatgttagcaaaatttattctaaagaatgcaagagtttta 155  Q
    ||||||||||||||||| |||  ||||||| |||| |||||||| ||||| |  ||||||||||||||||| |||||||||  |||| ||||||||||||    
T  973844 aaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgttagcaagatttattctggagaacgcaagagtttta 973745  T
Q  156 cgaactatga 165  Q
    | ||||||||    
T  973744 caaactatga 973735  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 200
Target Start/End: Complemental strand, 965279 - 965135
Alignment:
Q  56 aaaccttacaacttgcattattcgggacttcgcatttgcaggcctacaacattgtcacattatgttagcaaaatttattctaaagaatgcaagagtttta 155  Q
    ||||||||||||||||| |||  ||||||| |||| |||||||| ||||| |  |||||||||| |||||| |||||||||  |||||||||||||||||    
T  965279 aaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgctagcaagatttattctggagaatgcaagagtttta 965180  T
Q  156 cgaactatgactatcttgtgcaacaagaaacagtctaaagtagaa 200  Q
      ||||||| | || | |||| ||| ||||  |||||||||||||    
T  965179 gaaactatgtcaatgtggtgctacacgaaagggtctaaagtagaa 965135  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 222
Target Start/End: Original strand, 1403734 - 1403912
Alignment:
Q  44 ttgcttttcattaaaccttacaacttgcattattcgggacttcgcatttgcaggcctacaacattgtcacattatgttagcaaaatttattctaaagaat 143  Q
    |||| |||||||||||||||||||||||| ||| |||||||| |   ||| || || ||| | |  || ||||||||||||||  ||||||||  | |||    
T  1403734 ttgcctttcattaaaccttacaacttgcaatatgcgggactttgttgttgtagaccaacaccgtaatcgcattatgttagcaaggtttattctggataat 1403833  T
Q  144 gcaagagttttacgaactatgactatcttgtgcaacaagaaacagtctaaagtagaaagactattatcctcatgtccaa 222  Q
    ||||||||||||  ||||||| | |||| |||| |||||| |  | |||||| ||||||| ||||||||||||||||||    
T  1403834 gcaagagttttagaaactatgtcaatctggtgctacaagagatggcctaaagcagaaagagtattatcctcatgtccaa 1403912  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 1399988 - 1400193
Alignment:
Q  16 attgggtggattccgaatttgtttcaccttgcttttcattaaaccttacaacttgcattattcgggacttcgcatttgcaggcctacaacattgtcacat 115  Q
    ||||||||||| | |||| |||| ||  |||  |||||||||||||||||||||||| ||| |||||||| |    || ||||| ||||| |  || |||    
T  1399988 attgggtggatcctgaatctgttccaagttgtctttcattaaaccttacaacttgcaatatgcgggactttga---tgaaggccaacaacgtaatcgcat 1400084  T
Q  116 tatgttagcaaaatttattctaaagaatgcaagagttttacgaactatgactatcttgtgcaacaagaaacagtctaaagtagaaagactattatcctca 215  Q
    |||||||||||  ||||||||  |||||||||||||||||  ||||||| | |||| |||| ||| || |  | | |||| ||||||| |||||| ||||    
T  1400085 tatgttagcaaggtttattctgcagaatgcaagagttttagaaactatgccaatctggtgctacatgagatggcccaaagcagaaagagtattattctca 1400184  T
Q  216 tgtccaagg 224  Q
    |||||||||    
T  1400185 tgtccaagg 1400193  T

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Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 957926 - 957815
Alignment:
Q  44 ttgcttttcattaaaccttacaacttgcattattcgggacttcgcatttgcaggcctacaacattgtcacattatgttagcaaaatttattctaaagaat 143  Q
    |||| |||||||||||||||||||||||| ||| |||||||| ||| ||||||||| ||||  |  |||  |||| ||||||  ||||||||| ||||||    
T  957926 ttgcctttcattaaaccttacaacttgcactatgcgggactttgcacttgcaggccaacaaagtaatcatcttattttagcattatttattctgaagaat 957827  T
Q  144 gcaagagtttta 155  Q
    || |||||||||    
T  957826 gcgagagtttta 957815  T

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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 43 - 224
Target Start/End: Complemental strand, 45810329 - 45810148
Alignment:
Q  43 cttgcttttcattaaaccttacaacttgcattattcgggacttcgcatttgcaggcctacaacattgtcacattatgttagcaaaatttattctaaagaa 142  Q
    ||||| ||||||||||||| || ||||||| ||| |||||||| |||||||||||| |||||| |  |||  ||||||||||||  |||||||| |||||    
T  45810329 cttgcctttcattaaacctcacgacttgcactatgcgggactttgcatttgcaggcttacaacgtaatcatgttatgttagcaaggtttattctgaagaa 45810230  T
Q  143 tgcaagagttttacgaactatgactatcttgtgcaacaagaaacagtctaaagtagaaagactattatcctcatgtccaagg 224  Q
    ||||| |||||||  ||||||||| || | ||||| ||  |||| ||||||| |||||| ||||||||| ||||||||||||    
T  45810229 tgcaaaagttttagaaactatgacaatttggtgcagcagaaaacggtctaaaatagaaaaactattatcttcatgtccaagg 45810148  T

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Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 166
Target Start/End: Original strand, 36199331 - 36199445
Alignment:
Q  49 tttcattaaaccttacaacttgcattattcgggacttcgcatttgcaggcctacaacattgtcacattatgttagcaaaatttattctaaagaatgcaag 148  Q
    |||||||| | |||| |||||||| ||||||||||||||| |||| || |||||||||     || |||||||||||| || ||||||||| ||||||||    
T  36199331 tttcattatatcttagaacttgcactattcgggacttcgcttttgtagacctacaacacg---accttatgttagcaagatatattctaaataatgcaag 36199427  T
Q  149 agttttacgaactatgac 166  Q
    |||||||| |||||||||    
T  36199428 agttttacaaactatgac 36199445  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 223
Target Start/End: Original strand, 12105508 - 12105687
Alignment:
Q  44 ttgcttttcattaaaccttacaacttgcattattcgggacttcgcatttgcaggcctacaacattgtcacattatgttagcaaaatttattctaaagaat 143  Q
    |||| |||||| |||||||| |||||| |  || || ||||| ||| ||| |||||||||   || ||||||||||||||||||||||||||| ||||||    
T  12105508 ttgcctttcatcaaaccttagaacttgtacgatccgtgactttgcaattggaggcctacagagttatcacattatgttagcaaaatttattctgaagaat 12105607  T
Q  144 gcaagagttttacgaactatgactatcttgtgcaacaagaaacagtctaaagtagaaagactattatcctcatgtccaag 223  Q
     ||| |||||||  || |||| | |||| ||||  |  |||||||||| || ||||||||| |||| |||| ||| ||||    
T  12105608 tcaacagttttagaaaatatgtcaatctggtgcttcgggaaacagtctgaaatagaaagacgattaacctcgtgttcaag 12105687  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 28449617 - 28449506
Alignment:
Q  51 tcattaaaccttacaacttgcattattcgggacttcgcatttgcaggcctacaacattgtcacattatgttagcaaaatttattctaaagaatgcaagag 150  Q
    |||||| | ||||||||||||| |||||||||||| ||||||| || ||||||| |   | |||||||| |||||| || |||||| || ||||||||||    
T  28449617 tcattacatcttacaacttgcactattcgggactttgcatttgtagacctacaaaa---tgacattatgctagcaagatatattcttaataatgcaagag 28449521  T
Q  151 ttttacgaactatga 165  Q
    |||||| ||| ||||    
T  28449520 ttttacaaaccatga 28449506  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 224
Target Start/End: Complemental strand, 10116590 - 10116415
Alignment:
Q  49 tttcattaaaccttacaacttgcattattcgggacttcgcatttgcaggcctacaacattgtcacattatgttagcaaaatttattctaaagaatgcaag 148  Q
    |||||| ||||||||||||||| | ||| ||||| || | |||| ||||||||||   || |||||||||| |||| |  ||||||||  ||||||| ||    
T  10116590 tttcatcaaaccttacaacttgtactatgcgggaatttgaattttcaggcctacagtgttatcacattatgctagctaggtttattcttgagaatgcgag 10116491  T
Q  149 agttttacgaactatgactatcttgtgcaacaagaaacagtctaaagtagaaagactattatcctcatgtccaagg 224  Q
    |||||||  ||||||| | |||| |||   |  ||||| ||||||| |||||||| | ||||||||||||||||||    
T  10116490 agttttagaaactatgtcaatctggtgttgcgggaaacggtctaaaatagaaagagtgttatcctcatgtccaagg 10116415  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 48675232 - 48675122
Alignment:
Q  114 attatgttagcaaaatttattctaaagaatgcaagagttttacgaactatgactatcttgtgcaacaagaaacagtctaaagtagaaagactattatcct 213  Q
    ||||||||||||| || ||||||||| ||||||| |||||||| ||||||||| || | | || ||||| | ||  || || |||||||   ||||||||    
T  48675232 attatgttagcaagatatattctaaataatgcaaaagttttacaaactatgacaatatggagcgacaaggaccaacctcaaatagaaagggaattatcct 48675133  T
Q  214 catgtccaagg 224  Q
    |||||||||||    
T  48675132 catgtccaagg 48675122  T

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