View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17673_low_6 (Length: 356)
Name: NF17673_low_6
Description: NF17673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17673_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 344
Target Start/End: Original strand, 55825390 - 55825714
Alignment:
| Q |
18 |
gcttttgctgctttagcctcttccaaaacaagttctagctttttctctgcttcttcagccgctgctcgggatgcttcagcttcttgcttcagttcctgag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55825390 |
gcttttgctgctttagcctcttccaaaacaagttctagctttttctctgcttcttcagccgctgctcgggatgcttcagcttcttgcttcagttcctgag |
55825489 |
T |
|
| Q |
118 |
cctttctgctcatctcttcagcttctctttttgcatcttctgtctccgattgtagcttctggattttacaacttttcatgtagaaaaaacattggcatcc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
55825490 |
cctttctgctcatctcttcagcttctctttttgcatcttctgtctccgattgtagcttctggattttacaacttttcatgtag--aaaacattggcatcc |
55825587 |
T |
|
| Q |
218 |
acggtacctggctgaggccccgcctcttctgcgctcttttgcaattcaccagtgaggttaaaagcaagaacttctgctgcttgtttcttatccttaagtt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55825588 |
acggtacctggctgaggccccgcctcttctgcgctcttttgcaattcaccagtgaggttaaaagcaagaacttctgctgcttgtttcttatccttaagtt |
55825687 |
T |
|
| Q |
318 |
catcttgctctttcttcacttgtttca |
344 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
55825688 |
catcttgctctttcttcacttgtttca |
55825714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 56149591 - 56149267
Alignment:
| Q |
18 |
gcttttgctgctttagcctcttccaaaacaagttctagctttttctctgcttcttcagccgctgctcgggatgcttcagcttcttgcttcagttcctgag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56149591 |
gcttttgctgctttagcctcttccaaaacaagttctagctttttctctgcttcttcagccgctgctcgggatgcttcagcttcttgcttcagttcctgag |
56149492 |
T |
|
| Q |
118 |
cctttctgctcatctcttcagcttctctttttgcatcttctgtctccgattgtagcttctggattttacaacttttcatgtagaaaaaacattggcatcc |
217 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
56149491 |
cctttctgctcatctcttctgcttctctttttgcatcttctgtctccgattgtagcttctggattttacaacttttcatgtag--aaaacattggcatcc |
56149394 |
T |
|
| Q |
218 |
acggtacctggctgaggccccgcctcttctgcgctcttttgcaattcaccagtgaggttaaaagcaagaacttctgctgcttgtttcttatccttaagtt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56149393 |
acggtacctggctgaggccccgcctcttctgcgctcttttgcatttcaccagtgaggttaaaagcaagaacttctgctgcttgtttcttatccttaagtt |
56149294 |
T |
|
| Q |
318 |
catcttgctctttcttcacttgtttca |
344 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
56149293 |
catcttgctctttcttcacttgtttca |
56149267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 341
Target Start/End: Complemental strand, 9883816 - 9883755
Alignment:
| Q |
280 |
agcaagaacttctgctgcttgtttcttatccttaagttcatcttgctctttcttcacttgtt |
341 |
Q |
| |
|
||||||| |||| |||||||||| ||| |||||||| || ||||| |||||||||||||||| |
|
|
| T |
9883816 |
agcaagagcttccgctgcttgttccttctccttaagctcctcttgttctttcttcacttgtt |
9883755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 9884004 - 9883934
Alignment:
| Q |
93 |
tcagcttcttgcttcagttcctgagcctttctgctcatctcttcagcttctctttttgcatcttctgtctc |
163 |
Q |
| |
|
||||||||||| |||||||||||||| || | ||||||||||| ||||| || |||||| ||||||||| |
|
|
| T |
9884004 |
tcagcttcttgtttcagttcctgagctttcattctcatctcttcttcttcttttcttgcattttctgtctc |
9883934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University