View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17673_low_8 (Length: 324)
Name: NF17673_low_8
Description: NF17673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17673_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 35256352 - 35256656
Alignment:
| Q |
1 |
agtagctaaaaaacgtgccaatagtatatttggtcttggagcattagcaattacaaatgcagacgatgaagaaggcagccaccatcatgatgataacgat |
100 |
Q |
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| T |
35256352 |
agtagctaaaaaacgtgccaatagtatatttggtcttggagcattagcaattacaaatgcagacgatgaagaaggcagccaccaccatgatgataacgat |
35256451 |
T |
|
| Q |
101 |
gaaaatggaaaccaggtatttgaactatacaccgaagagaaggttctttccaatggtgattactatacaggacaatgggcagaaaattttccacatggag |
200 |
Q |
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| T |
35256452 |
gaaaatggaaaccaggtatttgaactatacaccgaagagaaggttctttccaatggtgattactatacaggacaatgggcagaaaattttccacatggag |
35256551 |
T |
|
| Q |
201 |
aaggaaaatatctatggacggatgggtgcatgtacgttggacaatggttcaaaggaaaaacaaagggaaaaggtagattcagttggccttcaggcgctac |
300 |
Q |
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| T |
35256552 |
aaggaaaatatctatggacggatgggtgcatgtacgttggacaatggttcaaaggaaaaacaaagggaaaaggtagattcagttggccttcaggcgctac |
35256651 |
T |
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| Q |
301 |
atatg |
305 |
Q |
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| T |
35256652 |
atatg |
35256656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 136 - 294
Target Start/End: Complemental strand, 19643249 - 19643091
Alignment:
| Q |
136 |
agagaaggttctttccaatggtgattactatacaggacaatgggcagaaaattttccacatggagaaggaaaatatctatggacggatgggtgcatgtac |
235 |
Q |
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| T |
19643249 |
agagagggttctacccaatggagattactataaaggagaatgggctgataacttcccacatgggaaagggaagtacttatggacagatggatgtatatat |
19643150 |
T |
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| Q |
236 |
gttggacaatggttcaaaggaaaaacaaagggaaaaggtagattcagttggccttcagg |
294 |
Q |
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| T |
19643149 |
gttggagaatggttcaaaggaaaaactatgggaaagggaaggttcacttggccttcagg |
19643091 |
T |
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