View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17673_low_9 (Length: 321)
Name: NF17673_low_9
Description: NF17673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17673_low_9 |
 | |
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| [»] chr6 (25 HSPs) |
| |
|
| [»] scaffold0294 (1 HSPs) |
| |
|
| [»] scaffold0552 (1 HSPs) |
| | |
|
| [»] scaffold0813 (1 HSPs) |
| | |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 25)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 321
Target Start/End: Original strand, 5370196 - 5370502
Alignment:
| Q |
16 |
atgctattgtattattttaaatattttactttgcactcttatggttagtgagacattgttattgcttccagnnnnnnnn-caaagcgtcttccttaagtt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5370196 |
atgctattgtattattttaaatattttactttgcactcttatggttagtgagacattgttattgcttccagtttttttttcaaagcgtcttccttaagtt |
5370295 |
T |
|
| Q |
115 |
tccctttgacttgtctgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatactt |
214 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5370296 |
tccctttgacttgtttgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatactt |
5370395 |
T |
|
| Q |
215 |
gcctaagcttgaaaaggtagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgggaatctcggcgaaattcttctaatagattttgaa |
314 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5370396 |
gcctaagcttgaaaagttagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgggaatctcggcgaaattcttctaatagattttgaa |
5370495 |
T |
|
| Q |
315 |
gattgtg |
321 |
Q |
| |
|
||||||| |
|
|
| T |
5370496 |
gattgtg |
5370502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 26 - 321
Target Start/End: Complemental strand, 5158074 - 5157778
Alignment:
| Q |
26 |
attattttaaatattttactttgcactcttatggttagtgagacattgttattgcttccagnnnnnnnn-caaagcgtcttccttaagtttccctttgac |
124 |
Q |
| |
|
||||||||||| |||||||||| |||||||| ||||||| |||||||||||| | ||||| | ||| |||||||||||||||||||||||| |
|
|
| T |
5158074 |
attattttaaaaattttactttccactcttaaggttagtaagacattgttatcgtttccattatttttttcgaagtgtcttccttaagtttccctttgac |
5157975 |
T |
|
| Q |
125 |
ttgtctgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagctt |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
5157974 |
atgtctgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatctt |
5157875 |
T |
|
| Q |
225 |
gaaaaggtagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgggaatctcggcgaaattcttctaatagattttgaagattgtg |
321 |
Q |
| |
|
|| ||| | ||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| | |||||||||||||||||||| |||||||||| |
|
|
| T |
5157874 |
gagaagctggtactcaaagattgtccaatgttgtctgaggtttctcctagcattggaaatctcagtgaaattcttctaatagatttggaagattgtg |
5157778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 25 - 321
Target Start/End: Original strand, 5096343 - 5096639
Alignment:
| Q |
25 |
tattattttaaatattttactttgcactcttatggttagtgagacattgttattgcttccagnnnnnnnncaaagcgtcttccttaagtttccctttgac |
124 |
Q |
| |
|
||||||||||||||||||||||| |||| | | |||||||||| |||||| |||| ||||| ||| ||||||||||||||| ||||||| |
|
|
| T |
5096343 |
tattattttaaatattttactttccactgtcaaggttagtgagtcattgtaattgtttccatttattttttgaagagtcttccttaagtttatctttgac |
5096442 |
T |
|
| Q |
125 |
ttgtctgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagctt |
224 |
Q |
| |
|
|||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||| |
|
|
| T |
5096443 |
atgtctgttcttgcagaggatggaaaaactgaaaattctaaatcttagtcattctcattgtctgacacacaccccagacttttcatacatgcctaatctt |
5096542 |
T |
|
| Q |
225 |
gaaaaggtagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgggaatctcggcgaaattcttctaatagattttgaagattgtg |
321 |
Q |
| |
|
|| ||| | ||||| ||||||||| ||||| ||||||||||||||||||||||||| |||||| | |||||||||||||||||||| |||||||||| |
|
|
| T |
5096543 |
gagaagctggtacttaaagattgtccaatgttgtctgaggtttctcctagcattggaaatctcagtgaaattcttctaatagatttggaagattgtg |
5096639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 21 - 321
Target Start/End: Complemental strand, 5067144 - 5066844
Alignment:
| Q |
21 |
attgtattattttaaatattttactttgcactcttatggttagtgagacattgttattgcttccagnnnnnnnncaaagcgtcttccttaagtttccctt |
120 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||| | ||| ||||| ||||| |||||||||||| | ||| ||| |||||||||||||||| |
|
|
| T |
5067144 |
attgcattattttaaatattttactttccactctcaaggtaagtgacacatttttattgcttccatttatttttcgaagagtcgtccttaagtttccctt |
5067045 |
T |
|
| Q |
121 |
tgacttgtctgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaa |
220 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||| ||||||| |
|
|
| T |
5067044 |
tgacatgtctgttcttgcagaggatggaaaagctgaaaattctaaatcttagccattctcattgtctgatgcacacccctgacttttcatatatgcctaa |
5066945 |
T |
|
| Q |
221 |
gcttgaaaaggtagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgggaatctcggcgaaattcttctaatagattttgaagattgt |
320 |
Q |
| |
|
||||||||| ||||||||||||||||| |||| |||| ||||||||||||| || || || ||| | |||||||||||||||||||| ||||||||| |
|
|
| T |
5066944 |
tcttgaaaagctagtactcaaagattgtccaatattgtccgaggtttctcctacaataggaaaactcagtgaaattcttctaatagatttggaagattgt |
5066845 |
T |
|
| Q |
321 |
g |
321 |
Q |
| |
|
| |
|
|
| T |
5066844 |
g |
5066844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 120 - 321
Target Start/End: Complemental strand, 5244218 - 5244017
Alignment:
| Q |
120 |
ttgacttgtctgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgccta |
219 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | |
|
|
| T |
5244218 |
ttgacatgtctgttcttgtggatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgtcaa |
5244119 |
T |
|
| Q |
220 |
agcttgaaaaggtagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgggaatctcggcgaaattcttctaatagattttgaagattg |
319 |
Q |
| |
|
| ||||||||| |||||||||||||||||||| || |||| ||| ||||||||||||||||||||||| | |||||||||||||||||||| |||||||| |
|
|
| T |
5244118 |
atcttgaaaagctagtactcaaagattgttcagtgttgtccgagatttctcctagcattgggaatctcagtgaaattcttctaatagatttggaagattg |
5244019 |
T |
|
| Q |
320 |
tg |
321 |
Q |
| |
|
|| |
|
|
| T |
5244018 |
tg |
5244017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 101 - 321
Target Start/End: Complemental strand, 5102984 - 5102764
Alignment:
| Q |
101 |
gtcttccttaagtttccctttgacttgtctgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacacccca |
200 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5102984 |
gtcttccttaagtttacctttgacatgtctgttcttgcagaggttggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacacccct |
5102885 |
T |
|
| Q |
201 |
gacttttcatacttgcctaagcttgaaaaggtagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgggaatctcggcgaaattcttc |
300 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| | ||||||||||||||| ||||| |||||||||||| ||||| |||||| ||||| ||||| |||| |
|
|
| T |
5102884 |
gacttttcatacttgcctaatcttgagaagctggtactcaaagattgtccaatgttgtctgaggtttgtcctaccattggagatctcactgaaatacttc |
5102785 |
T |
|
| Q |
301 |
taatagattttgaagattgtg |
321 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
5102784 |
taatagatttggaagattgtg |
5102764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 26 - 321
Target Start/End: Original strand, 5425546 - 5425841
Alignment:
| Q |
26 |
attattttaaatattttactttgcactcttatggttagtgagacattgttattgcttccagnnnnnnnncaaagcgtcttccttaagtttccctttgact |
125 |
Q |
| |
|
||||||| ||||||||||||| ||| | | ||| |||||||||||||||||||||||| ||||| ||| ||||||||||||| |||||| |
|
|
| T |
5425546 |
attatttcaaatattttacttaccacattcaaggtaagtgagacattgttattgcttccatttatttttcaaagagtcgtccttaagtttccttttgaca |
5425645 |
T |
|
| Q |
126 |
tgtctgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttg |
225 |
Q |
| |
|
|| ||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||| ||| | ||||||| |||| |
|
|
| T |
5425646 |
tgactgtttttgcagtggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcgcacccctgactttacattcatgcctaatcttg |
5425745 |
T |
|
| Q |
226 |
aaaaggtagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgggaatctcggcgaaattcttctaatagattttgaagattgtg |
321 |
Q |
| |
|
||||| | || |||||||||||| ||||| |||||||| |||||||||||||||| |||||| | ||||||||||||||| |||| |||||||||| |
|
|
| T |
5425746 |
aaaagctggtgctcaaagattgtccaatgttgtctgagatttctcctagcattggaaatctcagagaaattcttctaataaatttagaagattgtg |
5425841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 26 - 321
Target Start/End: Original strand, 5350032 - 5350325
Alignment:
| Q |
26 |
attattttaaatattttactttgcactcttatggttagtgagacattgttattgcttccagnnnnnnnncaaagcgtcttccttaagtttccctttgact |
125 |
Q |
| |
|
|||||||||||| |||||||| |||||| | ||| ||||| |||||||||||||||||| | ||| || |||||||||||||||||||| |
|
|
| T |
5350032 |
attattttaaatgctttactttccactctcaaggtaagtgaaacattgttattgcttccatttatttttcgaagagttgtccttaagtttccctttgaca |
5350131 |
T |
|
| Q |
126 |
tgtctgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttg |
225 |
Q |
| |
|
| |||||| || || |||||||||||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||||||| ||||||| |||| |
|
|
| T |
5350132 |
tttctgtttttaaagtggatggaaaagctgaaaattctaaatcttagtcattcttgttgtctgacacacaccc--gacttttcatacatgcctaatcttg |
5350229 |
T |
|
| Q |
226 |
aaaaggtagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgggaatctcggcgaaattcttctaatagattttgaagattgtg |
321 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||| |||||||||||||||||||| ||||| | |||||||||||||||||||| || ||||||| |
|
|
| T |
5350230 |
aaaagctagtactcaaagattgtccaatgttgtccgaggtttctcctagcattggagatctcagtgaaattcttctaatagatttggaggattgtg |
5350325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 130 - 319
Target Start/End: Complemental strand, 5128758 - 5128569
Alignment:
| Q |
130 |
tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaa |
229 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| |||| ||||||||||||||||||||| |||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
5128758 |
tgttcttgcagatgatggagaagctgaaaattctcaatcatagtcattctcattgtctgacacacaccccagacttttcatatttacctaatcttgaaaa |
5128659 |
T |
|
| Q |
230 |
ggtagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgggaatctcggcgaaattcttctaatagattttgaagattg |
319 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||| ||||||| || ||||| |||||||||| ||| |||| |||||||| |
|
|
| T |
5128658 |
gctagtactcaaagattgttcaatgttgtctgaggtttctactagcatcggacatctcaataaaattcttctgataaatttggaagattg |
5128569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 112 - 320
Target Start/End: Original strand, 5447309 - 5447517
Alignment:
| Q |
112 |
gtttccctttgacttgtctgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcata |
211 |
Q |
| |
|
||||||||||||| | | |||||||||||| ||||||||| || |||| ||| |||||||||||||||||| ||||||| ||| ||| |||||||||| |
|
|
| T |
5447309 |
gtttccctttgacatttttgttcttgcagaggatggaaaatctgaaaaatctcaatcttagtcattctcatcgtctgacaaacatcccggacttttcatg |
5447408 |
T |
|
| Q |
212 |
cttgcctaagcttgaaaaggtagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgggaatctcggcgaaattcttctaatagatttt |
311 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||| |||||||||| ||| |||| |
|
|
| T |
5447409 |
cttgcctaatcttgaaaagctagtactcaaagattgtccaatgttgtctgaggtttctcctagcattggacatctcaataaaattcttctgataaatttg |
5447508 |
T |
|
| Q |
312 |
gaagattgt |
320 |
Q |
| |
|
||||||||| |
|
|
| T |
5447509 |
gaagattgt |
5447517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 132 - 320
Target Start/End: Complemental strand, 5690498 - 5690310
Alignment:
| Q |
132 |
ttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaagg |
231 |
Q |
| |
|
|||||| |||||||||| ||||| |||||||| ||||||||||| ||||||| |||||| || ||||||||||||||| | ||||||| ||||||||| |
|
|
| T |
5690498 |
ttcttgtagatgatggagaagcttaaaattctcaatcttagtcactctcattatctgacacagaccccagacttttcaatcatgcctaatcttgaaaagc |
5690399 |
T |
|
| Q |
232 |
tagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgggaatctcggcgaaattcttctaatagattttgaagattgt |
320 |
Q |
| |
|
|| |||||||||||||| ||| | || ||||||||| | ||||||||| |||||| | |||||||||| ||| |||| ||||||||| |
|
|
| T |
5690398 |
taatactcaaagattgtccaaggttgcgtgaggtttcccatagcattggacatctcgacaaaattcttctgataaatttggaagattgt |
5690310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 130 - 320
Target Start/End: Original strand, 5433775 - 5433965
Alignment:
| Q |
130 |
tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaa |
229 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||||| || |||||||||| ||||| |||||| || || |||||||||||| | |||||||| |||||||| |
|
|
| T |
5433775 |
tgttcttgcagagaatggagaagctgaaaattcttaaccttagtcattgtcattatctgacacaaacaccagacttttcaaatttgcctaatcttgaaaa |
5433874 |
T |
|
| Q |
230 |
ggtagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgggaatctcggcgaaattcttctaatagattttgaagattgt |
320 |
Q |
| |
|
| ||||||||| ||||||| ||| || |||||| |||||||||||||||| ||||| ||||||||||| ||| |||| ||||||||| |
|
|
| T |
5433875 |
gttagtactcacagattgtccaagtctttctgagatttctcctagcattggccatctcaatgaaattcttctgataaatttggaagattgt |
5433965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 130 - 320
Target Start/End: Original strand, 5278306 - 5278496
Alignment:
| Q |
130 |
tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaa |
229 |
Q |
| |
|
|||||||||||| |||||| ||||| |||||||| ||||||||||||||||||| |||||| | ||||||||||||||| || ||||||| |||||||| |
|
|
| T |
5278306 |
tgttcttgcagaggatggagaagctgaaaattcttaatcttagtcattctcattatctgacagagaccccagacttttcaaacatgcctaatcttgaaaa |
5278405 |
T |
|
| Q |
230 |
ggtagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgggaatctcggcgaaattcttctaatagattttgaagattgt |
320 |
Q |
| |
|
| | |||||| |||||| ||| | ||| ||||||||||| ||||||||| |||||| |||||||||| ||| | || ||||||||| |
|
|
| T |
5278406 |
gcttatactcatagattgcccaaggttgtgtgaggtttctcatagcattggatatctcgataaaattcttctgataaacttggaagattgt |
5278496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 130 - 280
Target Start/End: Complemental strand, 5354955 - 5354805
Alignment:
| Q |
130 |
tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaa |
229 |
Q |
| |
|
|||||||||||| ||||| | || |||||||| |||||||||||||| ||||||||||| || ||||| |||||||| ||| ||||||| |||||||| |
|
|
| T |
5354955 |
tgttcttgcagagaatggagcatctgaaaattctcaatcttagtcattcacattgtctgacacatacccctgacttttcttacatgcctaatcttgaaaa |
5354856 |
T |
|
| Q |
230 |
ggtagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgg |
280 |
Q |
| |
|
| | ||||||||||||||| ||||| | ||||| |||||||| |||||||| |
|
|
| T |
5354855 |
gcttgtactcaaagattgtccaatgttatctgaagtttctccaagcattgg |
5354805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 130 - 287
Target Start/End: Complemental strand, 5284730 - 5284573
Alignment:
| Q |
130 |
tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaa |
229 |
Q |
| |
|
|||||||||||| |||||| ||||| |||||||| |||||||||||||| |||| ||| || | | ||| |||||||| || ||||||| |||||||| |
|
|
| T |
5284730 |
tgttcttgcagaggatggagaagctgaaaattctcaatcttagtcattcccattatctcacacgaagccctgacttttcgaacatgcctaatcttgaaaa |
5284631 |
T |
|
| Q |
230 |
ggtagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgggaatctc |
287 |
Q |
| |
|
| |||| |||||||||||| ||| ||| ||||||||||| ||||||||||| |||||| |
|
|
| T |
5284630 |
gctagtgctcaaagattgtccaaggctatctgaggtttcacctagcattggaaatctc |
5284573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 130 - 320
Target Start/End: Original strand, 5176479 - 5176669
Alignment:
| Q |
130 |
tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaa |
229 |
Q |
| |
|
|||||||||||| |||||| ||||| |||||||| ||||||||||||||||||| |||||| | ||||||||||||||| || ||||||| |||||||| |
|
|
| T |
5176479 |
tgttcttgcagaggatggagaagctgaaaattcttaatcttagtcattctcattatctgacagagaccccagacttttcaaacatgcctaatcttgaaaa |
5176578 |
T |
|
| Q |
230 |
ggtagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgggaatctcggcgaaattcttctaatagattttgaagattgt |
320 |
Q |
| |
|
| | |||||| |||||| ||| | || ||||||||| | ||||||||| |||||| |||||||||| ||| | || ||||||||| |
|
|
| T |
5176579 |
gcttatactcatagattgcccaaggttgcgtgaggtttcccatagcattggacatctcgataaaattcttctgataaacttggaagattgt |
5176669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 130 - 320
Target Start/End: Complemental strand, 5147237 - 5147047
Alignment:
| Q |
130 |
tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaa |
229 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||| || |||||||| ||||||| | |||| || |||||| |||||| | |||||||||| |||||| | |
|
|
| T |
5147237 |
tgttcttgcagaggatggagaagctaaaaattctcaagcttagtcactctcattatttgacacagaccccaaactttttaaacttgcctaatcttgaaca |
5147138 |
T |
|
| Q |
230 |
ggtagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgggaatctcggcgaaattcttctaatagattttgaagattgt |
320 |
Q |
| |
|
|||||||| |||||| ||||| ||||||| ||||||| ||| ||||| ||||| |||||||||| ||| |||| ||||||||| |
|
|
| T |
5147137 |
actagtactctctgattgtccaatgttgtctgaagtttctcatagtattggatatctcaataaaattcttctgataaatttggaagattgt |
5147047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 130 - 287
Target Start/End: Complemental strand, 5257675 - 5257518
Alignment:
| Q |
130 |
tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaa |
229 |
Q |
| |
|
|||||||||||| |||||| ||||| |||||||| |||||||||||||| | |||||| || | ||| |||||||| || ||||||| |||||||| |
|
|
| T |
5257675 |
tgttcttgcagaggatggagaagctgaaaattctcaatcttagtcattcccgttgtctcacaagaagccctgacttttccaacatgcctaatcttgaaaa |
5257576 |
T |
|
| Q |
230 |
ggtagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgggaatctc |
287 |
Q |
| |
|
| ||||||||||||||||| ||||||| ||| ||||||| | |||||||| |||||| |
|
|
| T |
5257575 |
gttagtactcaaagattgtccaatgctatctagggtttcttcaagcattggaaatctc |
5257518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 128 - 248
Target Start/End: Complemental strand, 5182270 - 5182150
Alignment:
| Q |
128 |
tctgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaa |
227 |
Q |
| |
|
|||||||||||||| | |||| ||||| |||||||| ||||||||||||||||||| |||| | | || |||||||||||| |||||||||| |||||| |
|
|
| T |
5182270 |
tctgttcttgcagaggctggagaagctgaaaattctcaatcttagtcattctcattttctgtcaaagactccagacttttcaaacttgcctaaccttgaa |
5182171 |
T |
|
| Q |
228 |
aaggtagtactcaaagattgt |
248 |
Q |
| |
|
|| ||||||||| ||||||| |
|
|
| T |
5182170 |
cagttagtactcacagattgt |
5182150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 320
Target Start/End: Complemental strand, 5074234 - 5074059
Alignment:
| Q |
145 |
tggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaaggtagtactcaaaga |
244 |
Q |
| |
|
|||| ||||| ||||| || ||||||||||||||||||| ||||||||| || ||||| |||||| |||||||||| |||||| | ||||||||| ||| |
|
|
| T |
5074234 |
tggagaagctgaaaatactcaatcttagtcattctcattatctgacgcaaactccagatttttcaaacttgcctaatcttgaacaactagtactcacaga |
5074135 |
T |
|
| Q |
245 |
ttgttcaatgctgtctgaggtttctcctagcattgggaatctcggcgaaattcttctaatagattttgaagattgt |
320 |
Q |
| |
|
|||| ||| | |||| |||||||||| ||| |||| ||||| |||||||||| ||| |||| ||||||||| |
|
|
| T |
5074134 |
ttgtccaaggttgtcagaggtttctcatagtattgaacatctcaataaaattcttctgataaatttggaagattgt |
5074059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 280
Target Start/End: Original strand, 5344601 - 5344751
Alignment:
| Q |
130 |
tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaa |
229 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||| |||| || ||||| |||||||| ||||| ||||| |||||||| |
|
|
| T |
5344601 |
tgttcttacagatgatggagaagctgaaaattctcaatcttagtcattctcattacctgatacaaaccccggacttttcttacttacctaatcttgaaaa |
5344700 |
T |
|
| Q |
230 |
ggtagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgg |
280 |
Q |
| |
|
| |||||||| |||||| ||| ||| |||| |||||| ||||||||| |
|
|
| T |
5344701 |
gttagtactcgtggattgtccaagtttgtgtgagatttctcatagcattgg |
5344751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 280
Target Start/End: Original strand, 5383066 - 5383216
Alignment:
| Q |
130 |
tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaa |
229 |
Q |
| |
|
|||||||||||| |||||| | || ||||| ||||| |||||||||||||||| ||| ||| ||||||||||| ||| | |||||||| |||||||| |
|
|
| T |
5383066 |
tgttcttgcagaggatggagatactgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcctaatcttgaaaa |
5383165 |
T |
|
| Q |
230 |
ggtagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgg |
280 |
Q |
| |
|
| |||||||| ||||||| | | | |||| |||||||||||||||||||| |
|
|
| T |
5383166 |
gctagtactcgcagattgtccgaggttgtccgaggtttctcctagcattgg |
5383216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 130 - 277
Target Start/End: Original strand, 5446897 - 5447044
Alignment:
| Q |
130 |
tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaa |
229 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||| |||||||| ||||| || | ||| || || | ||| ||||||||| || |||||| ||| |||| |
|
|
| T |
5446897 |
tgttcttgcagaggatggagaagctaaaaattctcaatcttagccattcgcactatctcacacaaagccctgacttttcaaacacgcctaatcttcaaaa |
5446996 |
T |
|
| Q |
230 |
ggtagtactcaaagattgttcaatgctgtctgaggtttctcctagcat |
277 |
Q |
| |
|
|||||||||||||||| || || ||||||||||||| |||||||| |
|
|
| T |
5446997 |
actagtactcaaagattgcccactgttgtctgaggtttcacctagcat |
5447044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 5396690 - 5396787
Alignment:
| Q |
130 |
tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaa |
227 |
Q |
| |
|
|||||||||||| | |||| ||||| |||||||| ||||||||||||||||||| | |||| || ||||||||||||||| || ||||||| |||||| |
|
|
| T |
5396690 |
tgttcttgcagaggctggagaagctgaaaattctcaatcttagtcattctcattatttgacacagaccccagacttttcaaacatgcctaatcttgaa |
5396787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 5128855 - 5128803
Alignment:
| Q |
33 |
taaatattttactttgcactcttatggttagtgagacattgttattgcttcca |
85 |
Q |
| |
|
|||||||||| |||| |||||| | ||||||||||||||||||||||| |||| |
|
|
| T |
5128855 |
taaatatttttctttccactctcaaggttagtgagacattgttattgcgtcca |
5128803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 133 - 321
Target Start/End: Complemental strand, 9238 - 9050
Alignment:
| Q |
133 |
tcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaaggt |
232 |
Q |
| |
|
||||||||| | ||| ||||| |||||||| ||||||||||||||||||| | ||| ||| ||||||||||||||||| |||||||| ||||||||| | |
|
|
| T |
9238 |
tcttgcagaggctggcgaagctgaaaattctcaatcttagtcattctcattatttgatgcataccccagacttttcatatttgcctaatcttgaaaagct |
9139 |
T |
|
| Q |
233 |
agtactcaaagattgttcaatgctgtctgaggtttctcctagcattgggaatctcggcgaaattcttctaatagattttgaagattgtg |
321 |
Q |
| |
|
|||||||||||||||| ||||| || | |||||||||| || |||||| ||||||| ||||| |||||||||||||| |||||||||| |
|
|
| T |
9138 |
agtactcaaagattgtccaatgttgaccgaggtttctcataccattggagatctcggtgaaatacttctaatagatttggaagattgtg |
9050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 130 - 316
Target Start/End: Complemental strand, 47987193 - 47987007
Alignment:
| Q |
130 |
tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaa |
229 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||| || | | || ||||||||| || ||||||| || ||||| |
|
|
| T |
47987193 |
tgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagccttgacttttcaaacatgcctaatctcgaaaa |
47987094 |
T |
|
| Q |
230 |
ggtagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgggaatctcggcgaaattcttctaatagattttgaaga |
316 |
Q |
| |
|
| |||||||||||||||| ||||| | |||||| |||||||||||||||| |||||| | |||||||||| ||| |||| ||||| |
|
|
| T |
47987093 |
gctagtactcaaagattgcccaatgttatctgagatttctcctagcattggacatctcgacaaaattcttctgataaatttggaaga |
47987007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 130 - 316
Target Start/End: Complemental strand, 47996480 - 47996294
Alignment:
| Q |
130 |
tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaa |
229 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||| || | | || ||||||||| || ||||||| || ||||| |
|
|
| T |
47996480 |
tgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagccttgacttttcaaacatgcctaatctcgaaaa |
47996381 |
T |
|
| Q |
230 |
ggtagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgggaatctcggcgaaattcttctaatagattttgaaga |
316 |
Q |
| |
|
| |||||||||||||||| ||||| | |||||| |||||||||||||||| |||||| | |||||||||| ||| |||| ||||| |
|
|
| T |
47996380 |
gctagtactcaaagattgcccaatgttatctgagatttctcctagcattggacatctcgacaaaattcttctgataaatttggaaga |
47996294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 130 - 316
Target Start/End: Complemental strand, 48005767 - 48005581
Alignment:
| Q |
130 |
tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaa |
229 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||| || | | || ||||||||| || ||||||| || ||||| |
|
|
| T |
48005767 |
tgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagccttgacttttcaaacatgcctaatctcgaaaa |
48005668 |
T |
|
| Q |
230 |
ggtagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgggaatctcggcgaaattcttctaatagattttgaaga |
316 |
Q |
| |
|
| |||||||||||||||| ||||| | |||||| |||||||||||||||| |||||| | |||||||||| ||| |||| ||||| |
|
|
| T |
48005667 |
gctagtactcaaagattgcccaatgttatctgagatttctcctagcattggacatctcgacaaaattcttctgataaatttggaaga |
48005581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 130 - 316
Target Start/End: Complemental strand, 48015052 - 48014866
Alignment:
| Q |
130 |
tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaa |
229 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||| || | | || ||||||||| || ||||||| || ||||| |
|
|
| T |
48015052 |
tgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagccttgacttttcaaacatgcctaatctcgaaaa |
48014953 |
T |
|
| Q |
230 |
ggtagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgggaatctcggcgaaattcttctaatagattttgaaga |
316 |
Q |
| |
|
| |||||||||||||||| ||||| | |||||| |||||||||||||||| |||||| | |||||||||| ||| |||| ||||| |
|
|
| T |
48014952 |
gctagtactcaaagattgcccaatgttatctgagatttctcctagcattggacatctcgacaaaattcttctgataaatttggaaga |
48014866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 128 - 265
Target Start/End: Complemental strand, 4124282 - 4124145
Alignment:
| Q |
128 |
tctgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaa |
227 |
Q |
| |
|
|||||||||||||| ||||| |||| |||||||| ||||||||||||||||||| |||||| || ||||| |||||||||||||||||||| |||||| |
|
|
| T |
4124282 |
tctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacacagacccctgacttttcatacttgcctaaccttgaa |
4124183 |
T |
|
| Q |
228 |
aaggtagtactcaaagattgttcaatgctgtctgaggt |
265 |
Q |
| |
|
||| | ||||||||||||||| ||| |||||||||||| |
|
|
| T |
4124182 |
aagctggtactcaaagattgtccaaggctgtctgaggt |
4124145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 131 - 268
Target Start/End: Original strand, 4344387 - 4344524
Alignment:
| Q |
131 |
gttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaag |
230 |
Q |
| |
|
||||||||||| |||||| |||| |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||||||||| ||||||||| |
|
|
| T |
4344387 |
gttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattgtctgacacagacgcctgacttttcatacttgcctaatcttgaaaag |
4344486 |
T |
|
| Q |
231 |
gtagtactcaaagattgttcaatgctgtctgaggtttc |
268 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| |||| |
|
|
| T |
4344487 |
ctagtactcaaagattgtccaaggctgtctgagatttc |
4344524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 135 - 280
Target Start/End: Complemental strand, 4320955 - 4320810
Alignment:
| Q |
135 |
ttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaaggtag |
234 |
Q |
| |
|
||||||| |||||| |||| || |||||||||||||||||||||||| | |||| || ||||| |||||||||||||||||||| ||||||||| ||| |
|
|
| T |
4320955 |
ttgcagaggatggagcagctgaagattctaaatcttagtcattctcatcatttgacacagacccctgacttttcatacttgcctaatcttgaaaagctag |
4320856 |
T |
|
| Q |
235 |
tactcaaagattgttcaatgctgtctgaggtttctcctagcattgg |
280 |
Q |
| |
|
| ||| ||||||| ||| ||||||| ||||||| | ||||||||| |
|
|
| T |
4320855 |
tgctcgaagattgcccaaggctgtctcaggtttcccatagcattgg |
4320810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 132 - 265
Target Start/End: Original strand, 4335087 - 4335220
Alignment:
| Q |
132 |
ttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaagg |
231 |
Q |
| |
|
|||||||||| |||||| || | |||||||| ||||||||||||||||||| ||| || || ||||| || ||||||||||||||||| |||||||| |
|
|
| T |
4335087 |
ttcttgcagaggatggagcagttgaaaattctcaatcttagtcattctcattatctaacacagacccctgatttttcatacttgcctaatcttgaaaacc |
4335186 |
T |
|
| Q |
232 |
tagtactcaaagattgttcaatgctgtctgaggt |
265 |
Q |
| |
|
||||||||||||||||| | | |||||||||||| |
|
|
| T |
4335187 |
tagtactcaaagattgtccgaggctgtctgaggt |
4335220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 151 - 268
Target Start/End: Original strand, 4360838 - 4360955
Alignment:
| Q |
151 |
agctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaaggtagtactcaaagattgttc |
250 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| | |||||| || || || |||||||||||||||||||| ||||||||| ||||||| ||||||||| | |
|
|
| T |
4360838 |
agctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtcc |
4360937 |
T |
|
| Q |
251 |
aatgctgtctgaggtttc |
268 |
Q |
| |
|
|| |||||||||| |||| |
|
|
| T |
4360938 |
aaggctgtctgagatttc |
4360955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 268
Target Start/End: Complemental strand, 4133764 - 4133626
Alignment:
| Q |
130 |
tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaa |
229 |
Q |
| |
|
|||||||||||| | |||| || |||||| |||| ||||||||||||||||||||||| || |||||||| |||||| || ||||||| || ||||| |
|
|
| T |
4133764 |
tgttcttgcagaggctggagaatctaaaatttctcaatcttagtcattctcattgtctagtacagaccccagatttttcacacatgcctaatctagaaaa |
4133665 |
T |
|
| Q |
230 |
ggtagtactcaaagattgttcaatgctgtctgaggtttc |
268 |
Q |
| |
|
|| |||||||||||||| ||| ||||||||||||||| |
|
|
| T |
4133664 |
actaatactcaaagattgtccaaggctgtctgaggtttc |
4133626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 135 - 241
Target Start/End: Original strand, 6772849 - 6772955
Alignment:
| Q |
135 |
ttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaaggtag |
234 |
Q |
| |
|
||||||||| | || || ||||||||||| |||||||||||||| ||| | |||| | ||||||||||||||||||||||| || ||||||||| ||| |
|
|
| T |
6772849 |
ttgcagatgctagagaatctaaaaattcttaatcttagtcattcccatgatttgaccgaaaccccagacttttcatacttgccgaatcttgaaaagctag |
6772948 |
T |
|
| Q |
235 |
tactcaa |
241 |
Q |
| |
|
||||||| |
|
|
| T |
6772949 |
tactcaa |
6772955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 230
Target Start/End: Complemental strand, 6588535 - 6588437
Alignment:
| Q |
132 |
ttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaag |
230 |
Q |
| |
|
|||||||||||| | ||||| ||||||||||| |||||||||||||||| | |||| | |||||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
6588535 |
ttcttgcagatgcttgaaaatctaaaaattcttaatcttagtcattctctagatttgactgaaaccccagacttttcctacttacctaatcttgaaaag |
6588437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 244
Target Start/End: Complemental strand, 6498865 - 6498753
Alignment:
| Q |
132 |
ttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaagg |
231 |
Q |
| |
|
|||||||||||| | || || || |||||||| ||||||||||||||||| | ||| | |||||||||||| | ||||||||||| |||||||| |
|
|
| T |
6498865 |
ttcttgcagatgctagagaatcttaaaattcttaatcttagtcattctcagaatttgattgaaaccccagactttacgtacttgcctaatattgaaaagc |
6498766 |
T |
|
| Q |
232 |
tagtactcaaaga |
244 |
Q |
| |
|
||||||||||||| |
|
|
| T |
6498765 |
tagtactcaaaga |
6498753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 244
Target Start/End: Original strand, 6675445 - 6675557
Alignment:
| Q |
132 |
ttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaagg |
231 |
Q |
| |
|
|||||| ||||||| || || ||||||||||| ||||||||||||||||| | || | | ||||||||||||||||||||||| || |||||||| |
|
|
| T |
6675445 |
ttcttgtagatgattgagaatctaaaaattcttaatcttagtcattctcaaaatttggctgaaaccccagacttttcatacttgcccaatattgaaaagc |
6675544 |
T |
|
| Q |
232 |
tagtactcaaaga |
244 |
Q |
| |
|
| || |||||||| |
|
|
| T |
6675545 |
tggtgctcaaaga |
6675557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 248
Target Start/End: Original strand, 6815233 - 6815328
Alignment:
| Q |
153 |
ctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaaggtagtactcaaagattgt |
248 |
Q |
| |
|
||||||||||| ||||| |||||||||| | |||| | |||||||||||| |||||||||| || ||||||||| ||||||||||| ||||| |
|
|
| T |
6815233 |
ctaaaaattcttaatctaagtcattctccagatttgactgaaaccccagactttacatacttgccaaatcttgaaaagctagtactcaaaaattgt |
6815328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 6650872 - 6650921
Alignment:
| Q |
195 |
accccagacttttcatacttgcctaagcttgaaaaggtagtactcaaaga |
244 |
Q |
| |
|
|||||||||||||||| | ||||||| ||||||||| ||||||||||||| |
|
|
| T |
6650872 |
accccagacttttcattcatgcctaatcttgaaaagctagtactcaaaga |
6650921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 244
Target Start/End: Complemental strand, 6532571 - 6532459
Alignment:
| Q |
132 |
ttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaagg |
231 |
Q |
| |
|
|||||||||||| | || | |||| |||||| |||||||||||||||| | |||| | |||||| |||||||||| ||||||| ||||||||| |
|
|
| T |
6532571 |
ttcttgcagatggtagagagtctaacaattcttaatcttagtcattctctacatttgactgaaaccccaaacttttcatatatgcctaatcttgaaaagt |
6532472 |
T |
|
| Q |
232 |
tagtactcaaaga |
244 |
Q |
| |
|
||||||||||||| |
|
|
| T |
6532471 |
tagtactcaaaga |
6532459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 6545724 - 6545676
Alignment:
| Q |
195 |
accccagacttttcatacttgcctaagcttgaaaaggtagtactcaaag |
243 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||| |||||||||||| |
|
|
| T |
6545724 |
accccagacttttcatatatgcctaatcttgaaaagatagtactcaaag |
6545676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 130 - 248
Target Start/End: Original strand, 8877349 - 8877467
Alignment:
| Q |
130 |
tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaa |
229 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||| |||||||| || |||||| |||||| || || |||||||||| | |||||||||| |||||||| |
|
|
| T |
8877349 |
tgttcttgcagaggatggagaagctaaaaattctcaatcttagccactctcatcatctgacacaaactccagactttttaaacttgcctaatcttgaaaa |
8877448 |
T |
|
| Q |
230 |
ggtagtactcaaagattgt |
248 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
8877449 |
gctagtactcaaagattgt |
8877467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 128 - 268
Target Start/End: Complemental strand, 36214172 - 36214032
Alignment:
| Q |
128 |
tctgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaa |
227 |
Q |
| |
|
|||||||||||||| | |||||||||| |||||||| ||||||||||||||||||| |||||| | || ||||| |||||| || ||||||| |||||| |
|
|
| T |
36214172 |
tctgttcttgcagaggctggaaaagctgaaaattctcaatcttagtcattctcattatctgacaaagactccagatttttcaaacatgcctaaccttgaa |
36214073 |
T |
|
| Q |
228 |
aaggtagtactcaaagattgttcaatgctgtctgaggtttc |
268 |
Q |
| |
|
|| ||||||||| ||||||| ||| ||||||||||||| |
|
|
| T |
36214072 |
aaactagtactcacagattgtccaagattgtctgaggtttc |
36214032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 248
Target Start/End: Complemental strand, 34724906 - 34724809
Alignment:
| Q |
151 |
agctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaaggtagtactcaaagattgt |
248 |
Q |
| |
|
|||| ||| |||| |||||||||||||||||| ||| || || |||||||||||||||||||| || ||||||||| || |||||||||||||| |
|
|
| T |
34724906 |
agctgaaatttcttaatcttagtcattctcataacttgaaacaaacaccagacttttcatacttgccaaatcttgaaaagttaatactcaaagattgt |
34724809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 18935156 - 18935243
Alignment:
| Q |
160 |
ttctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaaggtagtactcaaagattg |
247 |
Q |
| |
|
|||| |||||||||||||||||| |||| || ||||| |||||||| ||||||| || ||||||||| || ||||||||||||| |
|
|
| T |
18935156 |
ttcttaatcttagtcattctcataacctgagacaaaccccgaacttttcaaacttgccgaatcttgaaaagttaatactcaaagattg |
18935243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0552 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0552
Description:
Target: scaffold0552; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 248
Target Start/End: Complemental strand, 8603 - 8508
Alignment:
| Q |
153 |
ctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaaggtagtactcaaagattgt |
248 |
Q |
| |
|
||||||||||| ||||| |||||||||| | |||| | |||||||||||| |||||||||| || ||||||||| ||||||||||| ||||| |
|
|
| T |
8603 |
ctaaaaattcttaatctaagtcattctccagatttgactgaaaccccagactttacatacttgccaaatcttgaaaagctagtactcaaaaattgt |
8508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0813 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0813
Description:
Target: scaffold0813; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 5102 - 5053
Alignment:
| Q |
195 |
accccagacttttcatacttgcctaagcttgaaaaggtagtactcaaaga |
244 |
Q |
| |
|
|||||||||||||||| | ||||||| ||||||||| ||||||||||||| |
|
|
| T |
5102 |
accccagacttttcattcatgcctaatcttgaaaagctagtactcaaaga |
5053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 6464 - 6513
Alignment:
| Q |
195 |
accccagacttttcatacttgcctaagcttgaaaaggtagtactcaaaga |
244 |
Q |
| |
|
|||||||||||||||| | ||||||| ||||||||| ||||||||||||| |
|
|
| T |
6464 |
accccagacttttcattcatgcctaatcttgaaaagctagtactcaaaga |
6513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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