View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17674_high_6 (Length: 226)

Name: NF17674_high_6
Description: NF17674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17674_high_6
NF17674_high_6
[»] chr2 (2 HSPs)
chr2 (80-180)||(28259647-28259747)
chr2 (20-83)||(28259792-28259855)
[»] chr1 (1 HSPs)
chr1 (94-137)||(30016052-30016095)


Alignment Details
Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 80 - 180
Target Start/End: Complemental strand, 28259747 - 28259647
Alignment:
Q  80 aaaagcacggtttcaattggatgccaaacatcctcttcgtaccataaaatcacgtttgatgtgctaatagtgcgtctgtgcttctcaaacgcacatccaa 179  Q
    ||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||    
T  28259747 aaaagcacgttttcaattggatgccaaacatcctattcataccataaaatcacgtttgatgtgctaatcgtgcgtttgtgcttctcaaacgcagatccaa 28259648  T
Q  180 a 180  Q
    |    
T  28259647 a 28259647  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 28259855 - 28259792
Alignment:
Q  20 aattaagggtaaagctggaaacaaatatatacttcctgcaaaatcaattttaacagacgcaaaa 83  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||| | |||||||||||    
T  28259855 aattaagggtaaagctggaaacaaatatatactttatgcaaaatcaatttaagcagacgcaaaa 28259792  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 30016095 - 30016052
Alignment:
Q  94 aattggatgccaaacatcctcttcgtaccataaaatcacgtttg 137  Q
    |||||||| |||||||||||||| | ||||||||||||||||||    
T  30016095 aattggataccaaacatcctcttggaaccataaaatcacgtttg 30016052  T

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