View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17674_low_1 (Length: 508)
Name: NF17674_low_1
Description: NF17674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17674_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 48568716 - 48568909
Alignment:
| Q |
20 |
atacatgtgtcagttctaacttggaaatacacttatgcaagagcaggcggaaggccattcctcatcttgtctcctagataatagtcaacgctaatattat |
119 |
Q |
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| T |
48568716 |
atacatgtgtcagttttaacttggaaatacacttatgcaagagcaggcggaaggccattcctcatcttgtctcctagataatagtcaacgctaatattat |
48568815 |
T |
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| Q |
120 |
ttcagtcaattttgctagacaaattaattaggccatttccttaatccctgttagttttttaaagaactgaacttgtcttgacataattgctgcg |
213 |
Q |
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| T |
48568816 |
ttcagtcaattttgctagacaaattaattaggccatttccttaatccctgttagttttttaaagaactgaacttgtcttgacataattgctgcg |
48568909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 216 - 368
Target Start/End: Original strand, 48568936 - 48569090
Alignment:
| Q |
216 |
ttctttaggtcactgcaaagagctc--gacagaagactctaccttcttctctatggagatacctatggggctccgagcgggaaacctgtgtggcattttc |
313 |
Q |
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| T |
48568936 |
ttctttaggtcactgcaaagagctcttgacagaagactctaccttcttctctatggagatacctatggggctccgagcgggaaacctgtgtggcattttc |
48569035 |
T |
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| Q |
314 |
cagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattcattgtgg |
368 |
Q |
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| T |
48569036 |
cagagaaaccttatgaatcagaggaaaccatgcgtaaggtgaacattcattgtgg |
48569090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 427 - 487
Target Start/End: Original strand, 48569141 - 48569201
Alignment:
| Q |
427 |
gaaatcttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacct |
487 |
Q |
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| T |
48569141 |
gaaatcttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacct |
48569201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 218 - 361
Target Start/End: Complemental strand, 10822347 - 10822202
Alignment:
| Q |
218 |
ctttaggtcactgcaaagagctc--gacagaagactctaccttcttctctatggagatacctatggggctccgagcgggaaacctgtgtggcattttcca |
315 |
Q |
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| T |
10822347 |
ctttaggtcactacaaagggctcttgacagaagactttaccttcttctctttggtgatgcttatggggctccaagtggaaagcctgtgtggcattttcca |
10822248 |
T |
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| Q |
316 |
gagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattc |
361 |
Q |
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| T |
10822247 |
gaaaaagtatatgaatcagaggaaactatgcgtaaggtgaacattc |
10822202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 217 - 361
Target Start/End: Original strand, 36145048 - 36145194
Alignment:
| Q |
217 |
tctttaggtcactgcaaagagctc--gacagaagactctaccttcttctctatggagatacctatggggctccgagcgggaaacctgtgtggcattttcc |
314 |
Q |
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| T |
36145048 |
tctttaggtcactacaaagggctcttgatagaagactttaccttcttctctttggtgatgcttatggggctccaagtggaaagcctgtgtggcattttcc |
36145147 |
T |
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| Q |
315 |
agagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattc |
361 |
Q |
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||| ||| |||||||||||||| |||||||||||||| ||||||| |
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| T |
36145148 |
agaaaaagtatatgaatcagaggataccatgcgtaaggtgaacattc |
36145194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 492
Target Start/End: Complemental strand, 10821937 - 10821878
Alignment:
| Q |
433 |
ttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctatttt |
492 |
Q |
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| T |
10821937 |
ttgcagtgtgcagaatctgccttgaaatcagtcttaggagatctttcgaatacatatttt |
10821878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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