View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17674_low_6 (Length: 226)

Name: NF17674_low_6
Description: NF17674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17674_low_6
NF17674_low_6
[»] chr2 (2 HSPs)
chr2 (80-180)||(28259647-28259747)
chr2 (20-83)||(28259792-28259855)
[»] chr1 (1 HSPs)
chr1 (94-137)||(30016052-30016095)


Alignment Details
Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 80 - 180
Target Start/End: Complemental strand, 28259747 - 28259647
Alignment:
Q  80 aaaagcacggtttcaattggatgccaaacatcctcttcgtaccataaaatcacgtttgatgtgctaatagtgcgtctgtgcttctcaaacgcacatccaa 179  Q
    ||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||    
T  28259747 aaaagcacgttttcaattggatgccaaacatcctattcataccataaaatcacgtttgatgtgctaatcgtgcgtttgtgcttctcaaacgcagatccaa 28259648  T
Q  180 a 180  Q
    |    
T  28259647 a 28259647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 28259855 - 28259792
Alignment:
Q  20 aattaagggtaaagctggaaacaaatatatacttcctgcaaaatcaattttaacagacgcaaaa 83  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||| | |||||||||||    
T  28259855 aattaagggtaaagctggaaacaaatatatactttatgcaaaatcaatttaagcagacgcaaaa 28259792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 30016095 - 30016052
Alignment:
Q  94 aattggatgccaaacatcctcttcgtaccataaaatcacgtttg 137  Q
    |||||||| |||||||||||||| | ||||||||||||||||||    
T  30016095 aattggataccaaacatcctcttggaaccataaaatcacgtttg 30016052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University