View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17675_high_3 (Length: 496)

Name: NF17675_high_3
Description: NF17675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17675_high_3
NF17675_high_3
[»] chr4 (5 HSPs)
chr4 (19-401)||(27078183-27078565)
chr4 (19-401)||(27166247-27166630)
chr4 (27-243)||(1284153-1284364)
chr4 (334-379)||(27076275-27076320)
chr4 (123-205)||(27076358-27076439)


Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 401
Target Start/End: Original strand, 27078183 - 27078565
Alignment:
Q  19 tagtagacgacaaacaaatcacaattataaagaaaaatatgagtacctatctggtgccaaattcacaaaaggtcttccttgaaaaaattggtccnnnnnn 118  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||           
T  27078183 tagtagacgacaaacaaatcacaattataaggaaaaatatgagtacctatctggtgccaaattcacaaaaggtcttccctgaaaaaattggtcttttttt 27078282  T
Q  119 nnnngcctgaagaaaagagtgacataattaatccattgccaacctccattcgtccacgttttatttcaaccatggaggaatgaaaaatatacacatattt 218  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  27078283 ttttgcctgaagaaaagagtgacataattaatccattgccaacctccattcgtcggcgttttatttcaaccatggaggaatgaaaaatatacacatattt 27078382  T
Q  219 ttgctgtgacaactagcgcgaaaagaaaatggtatcataaaatgagtttgttaagtttataaaggtagttccgaatgacaaaaaatatcaaaaacgcaca 318  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  27078383 ttgctgtgtcaactagcgcgaaaagaaaatggtatcataaaatgagtttgttaagtttataaaggtagttccgaatgacaaaaaatatcaaaaa-gcgca 27078481  T
Q  319 tttaattctgtcata-ttttttattcaatcattgaaatatacataacataggtctagatcaatagcatgaaaaccatccatcca 401  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27078482 tttaattctgtcatatttttttattcaatcattgaaatatacataacataggtctagatcaatagcatgaaaaccatccatcca 27078565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 401
Target Start/End: Original strand, 27166247 - 27166630
Alignment:
Q  19 tagtagacgacaaacaaatcacaattataaagaaaaatatgagtacctatctggtgccaaattcacaaaaggtcttccttgaaaaaattggtccnnnnnn 118  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||           
T  27166247 tagtagacgacaaacaaatcacaattataaggaaaaatatgagtacctatctggtgccaaattcacaaaaggtcttccctgaaaaaattggtcttttttt 27166346  T
Q  119 nnnng-cctgaagaaaagagtgacataattaatccattgccaacctccattcgtccacgttttatttcaaccatggaggaatgaaaaatatacacatatt 217  Q
        | |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  27166347 ttttgtcctgaagaaaagagtgacataattaatccattgccaacctccattcgtcggcgttttatttcaaccatggaggaatgaaaaatatacacatatt 27166446  T
Q  218 tttgctgtgacaactagcgcgaaaagaaaatggtatcataaaatgagtttgttaagtttataaaggtagttccgaatgacaaaaaatatcaaaaacgcac 317  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  27166447 tttgctgtgtcaactagcgcgaaaagaaaatggtatcataaaatgagtttgttaagtttataaaggtagttccgaatgacaaaaaatatcaaaaa-gcgc 27166545  T
Q  318 atttaattctgtcata-ttttttattcaatcattgaaatatacataacataggtctagatcaatagcatgaaaaccatccatcca 401  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27166546 atttaattctgtcatatttttttattcaatcattgaaatatacataacataggtctagatcaatagcatgaaaaccatccatcca 27166630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 27 - 243
Target Start/End: Original strand, 1284153 - 1284364
Alignment:
Q  27 gacaaacaaatcacaattataaagaaaaatatgagtacctatctggtgccaaattcacaaaaggtcttccttgaaaaaattggtccnnnnnnnnnngcct 126  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||| |||||||| || |||          | ||    
T  1284153 gacaaacaaatcacaattataaggaaaaagatgagtacctatctggtaccaaattcacaaaaggtcttccctgaaaaaactgctcc--ttttttttgtct 1284250  T
Q  127 gaagaaaagagtgacataattaatccattgccaacctccattcgtccacgttttatttcaaccatggaggaatgaaaaatatacacatatttttgctgtg 226  Q
    ||||   || |||||||| || ||||||||| ||||||| ||||||  |||||||||||||| ||||  ||||||||| |||||||||||||||| ||||    
T  1284251 gaag---agggtgacatagttgatccattgcaaacctccgttcgtcggcgttttatttcaactatggctgaatgaaaattatacacatatttttgttgtg 1284347  T
Q  227 acaactagcgcgaaaag 243  Q
     ||||||||||||||||    
T  1284348 tcaactagcgcgaaaag 1284364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 334 - 379
Target Start/End: Complemental strand, 27076320 - 27076275
Alignment:
Q  334 ttttttattcaatcattgaaatatacataacataggtctagatcaa 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  27076320 ttttttattcaatcattgaaatatacataacataggtctagatcaa 27076275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 123 - 205
Target Start/End: Complemental strand, 27076439 - 27076358
Alignment:
Q  123 gcctgaagaaaagagtgacataattaatccattgccaacctccattcgtccacgttttatttcaaccatggaggaatgaaaaa 205  Q
    |||||||||| |||||||||||||| || ||||||||||||||||| |||  ||||||||||  |||||||  ||||||||||    
T  27076439 gcctgaagaagagagtgacataattgattcattgccaacctccatttgtcggcgttttattt-taccatggctgaatgaaaaa 27076358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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