View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17675_high_8 (Length: 294)
Name: NF17675_high_8
Description: NF17675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17675_high_8 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 38868953 - 38868659
Alignment:
| Q |
1 |
gtaaaagacatagatgatttcaagagatgcatgaatgatcatcatcgagtcagacttccagttcaagaattcaaacaaatggtgaatgaggtccttaaag |
100 |
Q |
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| T |
38868953 |
gtaaaagacatagatgatttcaagagatgcatgaatgatcatcatcgagtcagacttccagttcaagaattcaaacaaatggtgaatgaggtccttaaag |
38868854 |
T |
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| Q |
101 |
ggcatatgtatttaattttgggattcaactactacatgaggcattatcgaatcagacttccaattccaatccatcatgatgaacaactaggtcataagac |
200 |
Q |
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| T |
38868853 |
ggcatatgtatttaattttgggattcaactactacatgaggcattatcgaatcagacttccaattccaatccatcatgatgaacaactaggtcataagac |
38868754 |
T |
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| Q |
201 |
tggtt-tggttagtagttttttatgattattgtacctcacatttgttgataattttactttgtattttttaaaggggtttggcaacttagacaaa |
294 |
Q |
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| T |
38868753 |
tggttctggttagtagttttttatgattattgtacctcacatttgttgataattttactttgtattttttaaaggggtttggtaacttagacaaa |
38868659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 164
Target Start/End: Complemental strand, 30865374 - 30865211
Alignment:
| Q |
4 |
aaagacatagatgatttcaagagatgcatgaatgatcatcatcgagtcag---acttccagttcaagaattcaaacaaatggtgaatgaggtccttaaag |
100 |
Q |
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| T |
30865374 |
aaagacatagatgatttcaagacctgcatgaagaatgatcatcaaatcatcatacttccagttcaagaattctaacaaaaggtgaatgatgtactcaaag |
30865275 |
T |
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| Q |
101 |
ggcatatgtatttaattttgggattcaactactacatgaggcattatcgaatcagacttccaat |
164 |
Q |
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| T |
30865274 |
gccagaaacatttaatcttgggattcaacacctacatgaagcattatcgaatcagactgccaat |
30865211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 62 - 184
Target Start/End: Original strand, 39046707 - 39046829
Alignment:
| Q |
62 |
ttcaagaattcaaacaaatggtgaatgaggtccttaaagggcatatgtatttaattttgggattcaactactacatgaggcattatcgaatcagacttcc |
161 |
Q |
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| T |
39046707 |
ttcaagaattcaaacaaagaatgaataaggtacttctagggcataatcatttaatattaggattcaactcctacatgaagcatcatgcaatcagacttcc |
39046806 |
T |
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| Q |
162 |
aattccaatccatcatgatgaac |
184 |
Q |
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| T |
39046807 |
aattccaatcgatgatgatgaac |
39046829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 205
Target Start/End: Original strand, 3045592 - 3045795
Alignment:
| Q |
2 |
taaaagacatagatgatttcaagagatgcatgaatgatcatcatcgagtcagacttccagttcaagaattcaaacaaatggtgaatgaggtccttaaagg |
101 |
Q |
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|||||| ||||||||||||||||| |||||||| |||||||||| | || ||||||||||||||| |||||| ||| |||||| ||||| |||||||| |
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| T |
3045592 |
taaaagccatagatgatttcaagacctgcatgaaggatcatcatccaatcgtacttccagttcaagagttcaaagaaagggtgaacgaggtacttaaagg |
3045691 |
T |
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| Q |
102 |
gcatatgtatttaattttgggattcaactactacatgaggcattatcgaatcagacttccaattccaatccatcatgatgaacaactaggtcataagact |
201 |
Q |
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| T |
3045692 |
gcataaatatttaattttaggattcaatgcctacatgaagcattgtcgaatcagactaccaattccagtcgatgataatcaacaacgaggccacgagact |
3045791 |
T |
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| Q |
202 |
ggtt |
205 |
Q |
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|||| |
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| T |
3045792 |
ggtt |
3045795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 51 - 187
Target Start/End: Complemental strand, 33468768 - 33468632
Alignment:
| Q |
51 |
cagacttccagttcaagaattcaaacaaatggtgaatgaggtccttaaagggcatatgtatttaattttgggattcaactactacatgaggcattatcga |
150 |
Q |
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| T |
33468768 |
cagacttccagttaaaaaattcaaagaaaggatgaataaggtacttaaaaggcataatcatttgattttgggattcaacaactacatgaagcattatcgt |
33468669 |
T |
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| Q |
151 |
atcagacttccaattccaatccatcatgatgaacaac |
187 |
Q |
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| T |
33468668 |
atcacactttcaattccaatcaatgatgatgaacaac |
33468632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 1206509 - 1206412
Alignment:
| Q |
4 |
aaagacatagatgatttcaagagatgcatgaatgatcatcatcgagtcagacttccagttcaagaattcaaacaaatggtgaatgaggtccttaaagg |
101 |
Q |
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||||||||| |||||||||||| |||||||||||| |||| ||| | ||| |||||||||||||||||||| || ||||||||| |||||||| |
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| T |
1206509 |
aaagacataaatgatttcaagacctgcatgaatgattatcaaatcatcatatttcaagttcaagaattcaaacaaagggcgaatgaggtacttaaagg |
1206412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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