View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17675_low_1 (Length: 1106)

Name: NF17675_low_1
Description: NF17675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17675_low_1
NF17675_low_1
[»] chr2 (31 HSPs)
chr2 (19-671)||(9231139-9231779)
chr2 (704-880)||(9230968-9231145)
chr2 (971-1092)||(9230757-9230878)
chr2 (463-578)||(28254285-28254400)
chr2 (464-578)||(42514644-42514758)
chr2 (463-578)||(28531362-28531477)
chr2 (464-578)||(40679678-40679792)
chr2 (492-578)||(962593-962679)
chr2 (463-573)||(36178653-36178763)
chr2 (495-580)||(40733510-40733595)
chr2 (495-571)||(6712978-6713054)
chr2 (470-578)||(16542444-16542552)
chr2 (503-578)||(38796306-38796381)
chr2 (484-578)||(15880258-15880352)
chr2 (463-573)||(37106188-37106298)
chr2 (484-557)||(6422126-6422199)
chr2 (463-576)||(7598225-7598338)
chr2 (484-573)||(14745736-14745825)
chr2 (484-578)||(31468819-31468909)
chr2 (485-578)||(31899496-31899589)
chr2 (463-578)||(15511543-15511656)
chr2 (395-447)||(37106053-37106105)
chr2 (483-557)||(28254180-28254254)
chr2 (524-578)||(35580832-35580886)
chr2 (484-578)||(36005949-36006042)
chr2 (524-578)||(36785672-36785726)
chr2 (492-578)||(37632674-37632760)
chr2 (524-578)||(37895170-37895224)
chr2 (495-561)||(40163453-40163519)
chr2 (463-576)||(1769889-1770002)
chr2 (484-573)||(41283544-41283633)
[»] chr4 (31 HSPs)
chr4 (465-578)||(3244499-3244612)
chr4 (463-578)||(25483331-25483446)
chr4 (500-578)||(54741261-54741339)
chr4 (477-573)||(41370357-41370453)
chr4 (463-578)||(1731693-1731808)
chr4 (463-578)||(36629232-36629347)
chr4 (484-578)||(2740695-2740789)
chr4 (484-578)||(22183331-22183425)
chr4 (484-578)||(52884882-52884976)
chr4 (484-576)||(54017662-54017754)
chr4 (500-575)||(2741069-2741144)
chr4 (505-572)||(16889624-16889691)
chr4 (463-578)||(22028007-22028122)
chr4 (463-578)||(34646695-34646810)
chr4 (484-578)||(4955384-4955478)
chr4 (484-578)||(10246342-10246436)
chr4 (484-550)||(18932816-18932882)
chr4 (524-578)||(39792967-39793021)
chr4 (463-561)||(50630801-50630899)
chr4 (463-573)||(55933170-55933280)
chr4 (523-572)||(16888922-16888971)
chr4 (478-561)||(20826229-20826312)
chr4 (463-575)||(49302902-49303016)
chr4 (463-578)||(50002421-50002536)
chr4 (524-578)||(3700360-3700414)
chr4 (484-578)||(36572014-36572108)
chr4 (524-578)||(45489438-45489492)
chr4 (524-578)||(52884690-52884744)
chr4 (484-558)||(54108928-54109002)
chr4 (504-561)||(6975543-6975600)
chr4 (389-446)||(51768029-51768086)
[»] chr7 (27 HSPs)
chr7 (484-578)||(16569191-16569285)
chr7 (484-578)||(16596377-16596471)
chr7 (485-578)||(28301613-28301706)
chr7 (463-578)||(7517575-7517690)
chr7 (484-571)||(47129097-47129184)
chr7 (484-578)||(1085685-1085779)
chr7 (478-578)||(24177430-24177530)
chr7 (492-580)||(40230368-40230456)
chr7 (463-578)||(7554020-7554135)
chr7 (463-578)||(8128489-8128604)
chr7 (463-561)||(6054572-6054670)
chr7 (484-578)||(40094843-40094937)
chr7 (478-578)||(41910657-41910757)
chr7 (463-578)||(30244265-30244380)
chr7 (463-578)||(34218082-34218197)
chr7 (484-578)||(22566731-22566825)
chr7 (484-580)||(36622953-36623049)
chr7 (403-447)||(37393187-37393231)
chr7 (463-578)||(23425-23540)
chr7 (503-578)||(30244696-30244771)
chr7 (531-578)||(36967345-36967392)
chr7 (463-578)||(45754711-45754825)
chr7 (524-578)||(118410-118464)
chr7 (534-576)||(10341829-10341871)
chr7 (524-578)||(36109026-36109080)
chr7 (500-578)||(45434631-45434709)
chr7 (484-573)||(37533079-37533168)
[»] scaffold0078 (2 HSPs)
scaffold0078 (463-578)||(5352-5467)
scaffold0078 (485-578)||(4977-5070)
[»] chr6 (22 HSPs)
chr6 (463-578)||(2579920-2580035)
chr6 (484-578)||(10074060-10074154)
chr6 (465-573)||(26544049-26544157)
chr6 (463-578)||(10074411-10074526)
chr6 (463-573)||(35210204-35210314)
chr6 (395-447)||(2843684-2843736)
chr6 (463-578)||(2578883-2578997)
chr6 (463-578)||(16107673-16107788)
chr6 (463-573)||(2378126-2378236)
chr6 (463-573)||(14748386-14748496)
chr6 (484-578)||(16108058-16108152)
chr6 (463-573)||(29518503-29518613)
chr6 (463-573)||(29518920-29519030)
chr6 (463-573)||(32741179-32741289)
chr6 (463-571)||(2377756-2377864)
chr6 (395-447)||(16455036-16455088)
chr6 (463-578)||(2578491-2578605)
chr6 (486-573)||(3409660-3409747)
chr6 (463-573)||(1846748-1846858)
chr6 (463-573)||(3409259-3409369)
chr6 (464-578)||(16454570-16454684)
chr6 (527-561)||(17135181-17135215)
[»] chr5 (25 HSPs)
chr5 (463-578)||(41632777-41632892)
chr5 (463-561)||(9498702-9498800)
chr5 (484-578)||(26075231-26075325)
chr5 (463-578)||(26074194-26074309)
chr5 (503-578)||(39309679-39309754)
chr5 (524-578)||(36568676-36568730)
chr5 (463-561)||(41170646-41170744)
chr5 (534-578)||(31509618-31509662)
chr5 (495-578)||(1028597-1028680)
chr5 (463-578)||(15370094-15370209)
chr5 (486-577)||(40296386-40296477)
chr5 (504-571)||(42524719-42524785)
chr5 (484-578)||(6224191-6224285)
chr5 (484-578)||(42508607-42508701)
chr5 (478-570)||(41635254-41635346)
chr5 (396-447)||(3295323-3295374)
chr5 (463-578)||(12662700-12662815)
chr5 (495-578)||(13415840-13415923)
chr5 (484-571)||(18603189-18603276)
chr5 (463-578)||(26074607-26074722)
chr5 (463-562)||(33747782-33747881)
chr5 (463-570)||(35914852-35914959)
chr5 (484-578)||(299484-299578)
chr5 (524-573)||(623818-623867)
chr5 (484-561)||(34753094-34753171)
[»] chr1 (27 HSPs)
chr1 (500-578)||(22077580-22077658)
chr1 (484-578)||(41184494-41184588)
chr1 (492-578)||(21378118-21378204)
chr1 (484-573)||(44290527-44290616)
chr1 (463-578)||(17294572-17294687)
chr1 (507-578)||(24600406-24600477)
chr1 (463-578)||(34364920-34365035)
chr1 (463-578)||(41157370-41157485)
chr1 (484-578)||(34364502-34364596)
chr1 (487-580)||(22077900-22077993)
chr1 (484-573)||(44290894-44290983)
chr1 (484-575)||(41142370-41142461)
chr1 (484-578)||(5320034-5320128)
chr1 (504-561)||(5528843-5528900)
chr1 (463-578)||(37556106-37556221)
chr1 (494-573)||(3537226-3537305)
chr1 (531-578)||(44685451-44685498)
chr1 (523-578)||(45839622-45839676)
chr1 (495-570)||(50052103-50052178)
chr1 (524-578)||(66581-66635)
chr1 (484-578)||(3875400-3875494)
chr1 (536-578)||(22077243-22077285)
chr1 (484-578)||(24132054-24132148)
chr1 (524-578)||(39066309-39066363)
chr1 (534-579)||(1187483-1187528)
chr1 (406-447)||(11977409-11977450)
chr1 (500-577)||(45084378-45084455)
[»] chr8 (25 HSPs)
chr8 (463-578)||(30359266-30359381)
chr8 (493-580)||(40518575-40518662)
chr8 (484-578)||(9608740-9608834)
chr8 (477-578)||(41972153-41972254)
chr8 (463-578)||(33113415-33113530)
chr8 (463-570)||(43274827-43274934)
chr8 (464-570)||(147454-147560)
chr8 (484-578)||(5420646-5420740)
chr8 (484-578)||(9309350-9309444)
chr8 (484-561)||(70343-70420)
chr8 (495-578)||(8794106-8794189)
chr8 (463-578)||(30359604-30359719)
chr8 (524-579)||(45122166-45122221)
chr8 (524-578)||(147824-147878)
chr8 (484-578)||(3038359-3038453)
chr8 (484-550)||(9609108-9609174)
chr8 (478-578)||(9620739-9620839)
chr8 (492-579)||(1513992-1514079)
chr8 (500-578)||(6876947-6877026)
chr8 (407-454)||(32305599-32305646)
chr8 (411-561)||(43398062-43398217)
chr8 (487-578)||(9308972-9309065)
chr8 (540-578)||(18645712-18645750)
chr8 (463-561)||(34835221-34835319)
chr8 (463-560)||(20870621-20870718)
[»] scaffold0734 (1 HSPs)
scaffold0734 (484-578)||(5772-5866)
[»] chr3 (34 HSPs)
chr3 (395-447)||(15773323-15773375)
chr3 (463-578)||(12114610-12114725)
chr3 (463-578)||(39914247-39914362)
chr3 (483-578)||(49336755-49336850)
chr3 (500-573)||(37726504-37726577)
chr3 (463-578)||(32462948-32463064)
chr3 (463-578)||(9240144-9240259)
chr3 (484-575)||(21832412-21832503)
chr3 (463-578)||(37991025-37991140)
chr3 (464-551)||(41359814-41359901)
chr3 (492-577)||(1634391-1634477)
chr3 (500-578)||(8327899-8327977)
chr3 (463-573)||(22304569-22304679)
chr3 (500-578)||(25739510-25739588)
chr3 (524-578)||(33175773-33175827)
chr3 (484-578)||(35946517-35946611)
chr3 (492-577)||(7767391-7767476)
chr3 (463-576)||(15772851-15772964)
chr3 (477-578)||(15773187-15773288)
chr3 (537-582)||(39336351-39336396)
chr3 (534-578)||(12747871-12747915)
chr3 (408-448)||(37726624-37726664)
chr3 (463-578)||(37990687-37990802)
chr3 (463-578)||(54017864-54017979)
chr3 (463-573)||(4823655-4823765)
chr3 (504-578)||(25755389-25755463)
chr3 (492-578)||(29644658-29644744)
chr3 (492-578)||(29644979-29645065)
chr3 (492-578)||(33803329-33803415)
chr3 (484-578)||(42342159-42342253)
chr3 (484-578)||(52634671-52634764)
chr3 (524-578)||(53577359-53577413)
chr3 (402-447)||(25755523-25755568)
chr3 (500-573)||(51886561-51886634)
[»] scaffold0171 (1 HSPs)
scaffold0171 (484-578)||(17525-17619)
[»] scaffold0702 (1 HSPs)
scaffold0702 (463-571)||(562-670)
[»] scaffold0027 (1 HSPs)
scaffold0027 (463-577)||(47356-47470)


Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 671
Target Start/End: Complemental strand, 9231779 - 9231139
Alignment:
Q  19 ggtatagctgttttcctcttgagtggggtttcattttccatgtgttgtgtgagcgtgaggaacttcttttcttt-atagtaacaccttaaatcacgtatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  9231779 ggtatagctgttttcctcttgagtggggtttcattttccatgtgttgtgtgagcgtgaggaacttcttttcttttatagtaacaccttaaaacacgtatt 9231680  T
Q  118 ctacacatcagaatggaccatcctttctctataaacaagaagttaatcagctataggtacccaaaataaagctctcataaataatgaaaataggataatt 217  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  9231679 ctacacatcagaatggaccatcctttctctataa-caacaagttaatcagcta--ggtacccaaaataaagctctcataaataatgaaaataggataatt 9231583  T
Q  218 taacataacatttaatcaaactttttaataaacttcagcatgcagtttgttttattaagaagccaaaagacaaaatagcattggtaatggtaattattac 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||      |||||||||||    
T  9231582 taacataacatttaatcaaactttttaataaacttcagcatgcagtttgttttattaaga----------------agcattg------gtaattattac 9231505  T
Q  318 gtgcatgaaatataaggtttggttaatgggtattgtattgattatacattatagcaatgttttctagtactagtagatgttggatcataaggggagttcg 417  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||| |||| | ||||| ||     
T  9231504 gtgcatgaaatat-aggtttggttaatgggtattgtattgattatacattatagcaatgttttctagtgccagtagatgctgggtcatga-gggagctc- 9231408  T
Q  418 ggggatcgtccacatcgaggttagaacaactgcataatatattca---accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatt 514  Q
    |||||||||||||||| ||||||||| ||| ||||||  ||   |   || ||| |||||| ||||| ||||||||| ||||||||||| ||||||||||    
T  9231407 ggggatcgtccacatcaaggttagaataaccgcataagttagagagatactacactcttaaccaaaactttaaggcggtgggttgatggatcctcttatt 9231308  T
Q  515 tataataaattcaacatttacttttctatccgatgtgagacatataagtcatac------------ttgcacacaatagtagatattgaatgtaattaca 602  Q
    |||||||  |||||| |||||||||||||| ||| |||||||||||| ||||||            || ||||||| |||||||||||||||||||||||    
T  9231307 tataatatgttcaacctttacttttctatctgatatgagacatataactcatacttacacacaacattacacacaacagtagatattgaatgtaattaca 9231208  T
Q  603 ttgcatgatttagtggttataccagccttgcgtatacgtacctgaatgaggtaaaagatagaaagtgta 671  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  9231207 ttgcatgaattagtggttataccaaccttgcgtatacgtacctgaatcaggtaaaagatagaaagtgta 9231139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 2e-83
Query Start/End: Original strand, 704 - 880
Target Start/End: Complemental strand, 9231145 - 9230968
Alignment:
Q  704 aagtgaagttgttaaccaaatttaaggtttgtaagtagcttctagctagtaa-taagcaaaatatgaaatggacattgaagagattggacaagtggccaa 802  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     
T  9231145 aagtgtagttgttaaccaaatttaaggtttggaagtagcttctagctagtaaataagcaaaatatgaaatggacattgaagagattggacaagtggccat 9231046  T
Q  803 atagaaaggaaacaaatgaaatgaactaggccggtgcttaatgagggaccctttcatcaattaacatcattacagtcc 880  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9231045 atagaaaggaaacaaatgaaatgaactaggccggtgcttaatgagggaccctttcatcaattaacatcattacagtcc 9230968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 971 - 1092
Target Start/End: Complemental strand, 9230878 - 9230757
Alignment:
Q  971 tagtctacacatagcattgggaacccttccttttgcaaaagatgaaaaaatccacgtggtcccacatggctatgctttccacgtcgtacactcgtgacat 1070  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9230878 tagtctatacatagcattgggaacccttccttttgcaaaagatgaaaaaatccacgtggtcccacatggctatgctttccacgtcgtacactcgtgacat 9230779  T
Q  1071 aggccctgttccagcccctttg 1092  Q
    ||||||||||||||||||||||    
T  9230778 aggccctgttccagcccctttg 9230757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 463 - 578
Target Start/End: Original strand, 28254285 - 28254400
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||| ||| ||| ||||||||||||| |||||| |  |||||| ||||||||||||||||||||| ||||||||||    
T  28254285 accacactcttacccaaaaccttaaggcaatgagtttatgggtcctcttacttataagatgttcaacctttacttttctatccgatgtgggacatataag 28254384  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||| ||||||||    
T  28254385 tcacactggcacacaa 28254400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 464 - 578
Target Start/End: Complemental strand, 42514758 - 42514644
Alignment:
Q  464 ccacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagt 563  Q
    ||||| |||||  |||||| ||||||||||||||| ||||||||||||| ||||||    |||||| |||||||||||||| |||||  ||||||||| |    
T  42514758 ccacactcttacccaaaatcttaaggcgatgggtttatgggtcctcttacttataaggtgttcaacctttacttttctatctgatgtaggacatataact 42514659  T
Q  564 catacttgcacacaa 578  Q
    || ||||||| ||||    
T  42514658 cacacttgcatacaa 42514644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 463 - 578
Target Start/End: Original strand, 28531362 - 28531477
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||| ||||||| ||| ||| ||||| ||||||| ||||||    |||||| ||| ||||||||||||||||| |||||||||     
T  28531362 accacactcttacccaaaatcttaaggcaatgagtttatgggacctcttacttataaggtgttcaacctttgcttttctatccgatgtgggacatataac 28531461  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||||||||||    
T  28531462 tcacacttgcacacaa 28531477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 464 - 578
Target Start/End: Original strand, 40679678 - 40679792
Alignment:
Q  464 ccacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagt 563  Q
    ||||| |||||  |||||| ||||||||||||||| |||||| |||||| ||||||    ||||||  ||||||||||||||||| || ||||||||| |    
T  40679678 ccacactcttacccaaaatcttaaggcgatgggtttatgggttctcttacttataaggtgttcaacccttacttttctatccgatatgggacatataact 40679777  T
Q  564 catacttgcacacaa 578  Q
    || | ||||||||||    
T  40679778 cacatttgcacacaa 40679792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 492 - 578
Target Start/End: Complemental strand, 962679 - 962593
Alignment:
Q  492 atgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||||||||||| | ||||||    |||||| ||||||||||||||||||||| ||||||||| ||| ||||||| ||||    
T  962679 atgggtttatgggtcctctcacttataaggtgttcaacctttacttttctatccgatgtgggacatataactcacacttgcatacaa 962593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 463 - 573
Target Start/End: Original strand, 36178653 - 36178763
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||| ||||||| ||||||||||||| ||||||    |||||| |||||| || ||||||||||| |||||||||     
T  36178653 accacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttactattttatccgatgtgggacatataac 36178752  T
Q  563 tcatacttgca 573  Q
    ||| |||||||    
T  36178753 tcacacttgca 36178763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 495 - 580
Target Start/End: Complemental strand, 40733595 - 40733510
Alignment:
Q  495 ggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaata 580  Q
    |||| ||||||||||||| ||||||    |||||||||||||||| |||| |||||| ||||||||| ||| ||||| ||||||||    
T  40733595 ggtttatgggtcctcttacttataaggtgttcaacatttacttttttatctgatgtgggacatataactcacacttgtacacaata 40733510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 495 - 571
Target Start/End: Complemental strand, 6713054 - 6712978
Alignment:
Q  495 ggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttg 571  Q
    |||| ||||||||||||| ||||||    ||||||||||||| || ||||||||||||||||||||| ||| |||||    
T  6713054 ggtttatgggtcctcttacttataaggtgttcaacatttactgttttatccgatgtgagacatataactcacacttg 6712978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 470 - 578
Target Start/End: Complemental strand, 16542552 - 16542444
Alignment:
Q  470 tcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatact 569  Q
    ||||| ||||||| ||||||| ||| ||| ||  ||||||||||||||||    |||||| |||||| || ||||||||||| ||| ||||| ||| |||    
T  16542552 tcttactcaaaatcttaaggcaatgagtttataagtcctcttatttataaggtgttcaacctttactattttatccgatgtgggacttataactcacact 16542453  T
Q  570 tgcacacaa 578  Q
    |||||||||    
T  16542452 tgcacacaa 16542444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 503 - 578
Target Start/End: Original strand, 38796306 - 38796381
Alignment:
Q  503 ggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||||||||| ||||||    ||||||||||||| || ||||||||||| ||||||||| ||| ||||||||||||    
T  38796306 ggtcctcttacttataaggtgttcaacatttactgttttatccgatgtgggacatataactcacacttgcacacaa 38796381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 484 - 578
Target Start/End: Complemental strand, 15880352 - 15880258
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||||||| ||||||||||||| ||||||    |||||| |||||| || |||||||||||  |||||||| ||| ||||| ||||||    
T  15880352 ttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttactcttttatccgatgtggaacatataactcacacttgtacacaa 15880258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 463 - 573
Target Start/End: Complemental strand, 37106298 - 37106188
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||  ||||||| ||||||||||||| ||||||    |||||| |||||| || ||||||||||| |||||||||     
T  37106298 accacactcttacccaaaaccttaaggaaatgggtttatgggtcctcttacttataaggtgttcaacctttactattttatccgatgtgggacatataac 37106199  T
Q  563 tcatacttgca 573  Q
    ||| |||||||    
T  37106198 tcacacttgca 37106188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 484 - 557
Target Start/End: Complemental strand, 6422199 - 6422126
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacat 557  Q
    ||||||| ||||||| ||||||||||||| |||||||   |||||| ||||||||| |||| |||||| |||||    
T  6422199 ttaaggctatgggtttatgggtcctcttaattataatgtgttcaacctttacttttttatctgatgtgggacat 6422126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 463 - 576
Target Start/End: Complemental strand, 7598338 - 7598225
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||| |||||||  |||||  ||||||| ||| ||| ||||||||||||||||||||    || ||| ||||||||||||| ||||||   ||||||||     
T  7598338 accatattcttacccaaaaccttaaggctatgagtttatgggtcctcttatttataaggtgttgaacctttacttttctattcgatgtagaacatataat 7598239  T
Q  563 tcatacttgcacac 576  Q
    ||| ||||||||||    
T  7598238 tcacacttgcacac 7598225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 484 - 573
Target Start/End: Original strand, 14745736 - 14745825
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgca 573  Q
    ||||||| ||||||| ||||||||||||| ||||||    |||||| |||||| || ||||| ||||| ||||||||| ||| |||||||    
T  14745736 ttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttactattttatccaatgtgggacatataactcacacttgca 14745825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 484 - 578
Target Start/End: Original strand, 31468819 - 31468909
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||| ||| ||||||||||||||    || | ||||||| |||||| || ||||||||||| ||||||||| ||| ||||||||||||    
T  31468819 ttaaggcaatgagtttatgggtcctcttat----aagatattcaacctttactattttatccgatgtgggacatataactcacacttgcacacaa 31468909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 485 - 578
Target Start/End: Original strand, 31899496 - 31899589
Alignment:
Q  485 taaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||||| ||| ||| ||||||||||||| ||||||    ||||||||||||| || |||||||||||  |||||||| ||| |||| |||||||    
T  31899496 taaggcaatgagtttatgggtcctcttacttataaggtgttcaacatttactattttatccgatgtggaacatataactcacactttcacacaa 31899589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 463 - 578
Target Start/End: Original strand, 15511543 - 15511656
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||| ||||| | ||||||| ||||||||||||| ||||||    |||||| |||||| || |||||| |||| |||||||||     
T  15511543 accacactcttacccaaaatcttaagacaatgggtttatgggtcctcttacttataacgtgttcaacctttactcttttatccgttgtgtgacatataac 15511642  T
Q  563 tcatacttgcacacaa 578  Q
    ||  ||||||||||||    
T  15511643 tc--acttgcacacaa 15511656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 395 - 447
Target Start/End: Complemental strand, 37106105 - 37106053
Alignment:
Q  395 tgttggatcataaggggagttcgggggatcgtccacatcgaggttagaacaac 447  Q
    |||||| ||| |||||||| |||||||| |||||||||||||| |||||||||    
T  37106105 tgttgggtcacaaggggagctcgggggaccgtccacatcgaggctagaacaac 37106053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 483 - 557
Target Start/End: Original strand, 28254180 - 28254254
Alignment:
Q  483 tttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacat 557  Q
    |||||||| | | ||| ||| ||||||||| ||||||    |||||| |||||||||||||||||||||||||||    
T  28254180 tttaaggcaaagtgtttatgagtcctcttacttataaagtgttcaacctttacttttctatccgatgtgagacat 28254254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 524 - 578
Target Start/End: Original strand, 35580832 - 35580886
Alignment:
Q  524 ttcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||||||| | || ||||||||||| ||||||||| ||| ||||||||||||    
T  35580832 ttcaacatttattgttttatccgatgtgggacatataactcacacttgcacacaa 35580886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 484 - 578
Target Start/End: Original strand, 36005949 - 36006042
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||| ||| ||||||||||||| ||||||    |||||| ||||| ||||||| ||||||| ||||||||| ||| ||||| ||||||    
T  36005949 ttaaggcaatgagtttatgggtcctcttacttataaggtgttcaacttttac-tttctattcgatgtgggacatataactcacacttgtacacaa 36006042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 524 - 578
Target Start/End: Original strand, 36785672 - 36785726
Alignment:
Q  524 ttcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||||| |||||| || ||||||||||| ||||||||| ||| ||||||||||||    
T  36785672 ttcaacctttactattttatccgatgtgggacatataactcacacttgcacacaa 36785726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 492 - 578
Target Start/End: Original strand, 37632674 - 37632760
Alignment:
Q  492 atgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||||||||||||| |||||| |  |  ||| |||||| || ||||||||||  ||||||||| ||| ||||||||||||    
T  37632674 atgggtttatgggtcctcttacttataaaatgtcaaacctttactattttatccgatgtaggacatataactcacacttgcacacaa 37632760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 524 - 578
Target Start/End: Original strand, 37895170 - 37895224
Alignment:
Q  524 ttcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||||| |||| |||||||||||||||| ||||||||| ||| ||| ||||||||    
T  37895170 ttcaacttttatttttctatccgatgtgggacatataactcaaactcgcacacaa 37895224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 495 - 561
Target Start/End: Original strand, 40163453 - 40163519
Alignment:
Q  495 ggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataa 561  Q
    |||| ||||||| ||||| ||||||    |||||| ||||||||||||||||||||| |||||||||    
T  40163453 ggttaatgggtcatcttacttataaggtgttcaacctttacttttctatccgatgtgggacatataa 40163519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 463 - 576
Target Start/End: Complemental strand, 1770002 - 1769889
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| ||||| |||||  || || || ||| ||| ||| ||||||||| ||||||    |||||| |||||| || ||||||||||| |||||||||     
T  1770002 accacactcttattcaaagcttcaaagctatgagtttatgagtcctcttacttataaggtgttcaacttttactcttttatccgatgtgtgacatataac 1769903  T
Q  563 tcatacttgcacac 576  Q
    ||| ||||||||||    
T  1769902 tcacacttgcacac 1769889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 484 - 573
Target Start/End: Original strand, 41283544 - 41283633
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgca 573  Q
    ||||||| ||| ||| ||||||||||||| ||||||    |||||| |||||| || |||||||| || ||||||||| ||| |||||||    
T  41283544 ttaaggcaatgagtttatgggtcctcttacttataaggtgttcaacctttactattttatccgatatgggacatataactcacacttgca 41283633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 8e-24; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 465 - 578
Target Start/End: Original strand, 3244499 - 3244612
Alignment:
Q  465 cacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtc 564  Q
    ||||||||||  ||||| |||||| | ||| ||| ||||||||||||| |||||| |  |||||| ||||||||||||||||||||||||||||||| ||    
T  3244499 cacattcttacccaaaactttaagacaatgagtttatgggtcctcttacttataagatgttcaacctttacttttctatccgatgtgagacatataactc 3244598  T
Q  565 atacttgcacacaa 578  Q
    | ||||||||||||    
T  3244599 acacttgcacacaa 3244612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 463 - 578
Target Start/End: Complemental strand, 25483446 - 25483331
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||| ||||||| |||| |||||||| |||||| |  |||||| |||||| || |||||||||||||||||||||     
T  25483446 accacactcttacccaaaaccttaaggcaatgggtttatggatcctcttacttataagatgttcaacctttactattttatccgatgtgagacatataac 25483347  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||||||||||    
T  25483346 tcacacttgcacacaa 25483331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 500 - 578
Target Start/End: Original strand, 54741261 - 54741339
Alignment:
Q  500 atgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||||||||| ||||||    |||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  54741261 atgggtcctcttacttataaggtgttcaacctttacttttctatccgatgtgagacatataattcacacttgcacacaa 54741339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 477 - 573
Target Start/End: Complemental strand, 41370453 - 41370357
Alignment:
Q  477 caaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgca 573  Q
    ||||| |||||||| ||||||| ||||||||||||| ||||||    ||||||||||||| || |||||||| || ||||||||| ||| |||||||    
T  41370453 caaaactttaaggcaatgggtttatgggtcctcttacttataaggttttcaacatttactattttatccgatttgggacatataactcacacttgca 41370357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 463 - 578
Target Start/End: Original strand, 1731693 - 1731808
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||| || |||| |||||||||||||||||||| |  |||||| |||||| || |||| |||||| |||||||||     
T  1731693 accacactcttacccaaaaccttaaggcaattggtttatgggtcctcttatttataagatgttcaacctttactgttttatctgatgtgggacatataac 1731792  T
Q  563 tcatacttgcacacaa 578  Q
    ||| | ||||||||||    
T  1731793 tcacatttgcacacaa 1731808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 463 - 578
Target Start/End: Complemental strand, 36629347 - 36629232
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||| ||| ||| ||||||||||||| ||||||    || ||| ||||||||||||||||||||| |||||||||     
T  36629347 accacactcttacccaaaaccttaaggcaatgagtttatgggtcctcttacttataaggtgtttaacttttacttttctatccgatgtgggacatataac 36629248  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||| ||||||    
T  36629247 tcacacttgaacacaa 36629232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 484 - 578
Target Start/End: Complemental strand, 2740789 - 2740695
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||||||  |||||| || |||||||||| ||||||    |||||| |||||| |||||||||||||| ||||||||| ||| ||||||||||||    
T  2740789 ttaaggctctgggtttataggtcctcttacttataaggtgttcaacctttactgttctatccgatgtgggacatataactcacacttgcacacaa 2740695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 484 - 578
Target Start/End: Original strand, 22183331 - 22183425
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||||||| ||||||||| ||| ||||||    ||||||||||||| || ||||||||||| || |||||| ||| ||||||||||||    
T  22183331 ttaaggcaatgggtttatgggtccttttacttataaattgttcaacatttactcttttatccgatgtgggatatataactcacacttgcacacaa 22183425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 484 - 578
Target Start/End: Complemental strand, 52884976 - 52884882
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||||||| |||| |||||||| ||||||    |||||| |||||| || ||||||||||| ||||||||| ||| ||||||||||||    
T  52884976 ttaaggcaatgggtttatggatcctcttacttataaggtgttcaacctttactattttatccgatgtgggacatataactcacacttgcacacaa 52884882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 484 - 576
Target Start/End: Original strand, 54017662 - 54017754
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacac 576  Q
    ||||||| ||||||| ||||||||||||| |||||| |  |||||| |||||| || |||| || ||| ||||||||| ||| ||||||||||    
T  54017662 ttaaggcaatgggtttatgggtcctcttacttataagatgttcaacctttactattttatctgacgtgggacatataactcacacttgcacac 54017754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 500 - 575
Target Start/End: Complemental strand, 2741144 - 2741069
Alignment:
Q  500 atgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcaca 575  Q
    ||||||||||||| ||||||   ||||||| |||||| ||||||| |||||| ||||||||| ||| |||||||||    
T  2741144 atgggtcctcttacttataaggtattcaacctttactattctatctgatgtgggacatataactcacacttgcaca 2741069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 505 - 572
Target Start/End: Original strand, 16889624 - 16889691
Alignment:
Q  505 tcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgc 572  Q
    |||||||| ||||||   ||||||| |||||||||||||||||| |||||||||||| ||| ||||||    
T  16889624 tcctcttacttataaggtattcaacctttacttttctatccgatttgagacatataactcacacttgc 16889691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 463 - 578
Target Start/End: Original strand, 22028007 - 22028122
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    ||||||||||||  |||||  ||||||| ||  ||| ||||||||||||| ||||||    |||||| |||  | || ||||||||||| ||||||||||    
T  22028007 accacattcttacccaaaaccttaaggcaatatgtttatgggtcctcttacttataaggtgttcaacctttcgtattttatccgatgtgggacatataag 22028106  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||||||||||    
T  22028107 tcacacttgcacacaa 22028122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 463 - 578
Target Start/End: Original strand, 34646695 - 34646810
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||| ||| ||| ||| ||||||||| ||||||    ||||||||||||| || ||||||||||| |||||||||     
T  34646695 accacactcttacccaaaaccttaaggcaatgagtttatgagtcctcttagttataaggtgttcaacatttactgttttatccgatgtgggacatataac 34646794  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||| ||||||    
T  34646795 tcacacttgtacacaa 34646810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 484 - 578
Target Start/End: Original strand, 4955384 - 4955478
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||||||| ||| ||||||||| ||||||    |||||| || ||| || |||||||| |||||||||||| ||| ||||||||||||    
T  4955384 ttaaggcaatgggtttatgagtcctcttacttataaggtgttcaaccttaactattttatccgatatgagacatataactcacacttgcacacaa 4955478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 484 - 578
Target Start/End: Complemental strand, 10246436 - 10246342
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||||||| ||||||||||| | |||||| |  |||||| |||||| || |||||||| ||||||||||||   | ||||||||||||    
T  10246436 ttaaggctatgggtttatgggtcctctaacttataagatgttcaacctttactcttttatccgatttgagacatataacagacacttgcacacaa 10246342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 484 - 550
Target Start/End: Original strand, 18932816 - 18932882
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgt 550  Q
    ||||||| ||||||| ||||||||||||||||||||   ||||||| |||||| || ||||||||||    
T  18932816 ttaaggcaatgggtttatgggtcctcttatttataaggtattcaacctttactattttatccgatgt 18932882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 524 - 578
Target Start/End: Original strand, 39792967 - 39793021
Alignment:
Q  524 ttcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||||||||||||||||| |||||| ||||||||| ||| ||||| ||||||    
T  39792967 ttcaacatttacttttctatctgatgtgggacatataactcacacttgtacacaa 39793021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 463 - 561
Target Start/End: Original strand, 50630801 - 50630899
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataa 561  Q
    |||||| |||||  |||||  ||||||| ||||||| ||||||||||||| |||||||   |||||| |||||| || ||||||||||  |||||||||    
T  50630801 accacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataatgtgttcaacctttactattttatccgatgtaggacatataa 50630899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 463 - 573
Target Start/End: Original strand, 55933170 - 55933280
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  ||||| |||||||| ||||||| ||||||||||||| ||||||    ||||||  ||||| || ||||||||||  |||||||||     
T  55933170 accacactcttacccaaaactttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacccttactattttatccgatgtaggacatataac 55933269  T
Q  563 tcatacttgca 573  Q
    ||| |||||||    
T  55933270 tcacacttgca 55933280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 523 - 572
Target Start/End: Original strand, 16888922 - 16888971
Alignment:
Q  523 attcaacatttacttttctatccgatgtgagacatataagtcatacttgc 572  Q
    ||||||| ||||||||||||||||||||| ||||||||| ||| ||||||    
T  16888922 attcaacctttacttttctatccgatgtgggacatataactcacacttgc 16888971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 478 - 561
Target Start/End: Complemental strand, 20826312 - 20826229
Alignment:
Q  478 aaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataa 561  Q
    ||||| ||||||| ||||||| |||||| |||||| ||||||    |||||| |||||| || ||||||||||| |||||||||    
T  20826312 aaaatgttaaggctatgggtttatgggttctcttacttataacgtgttcaacttttactattttatccgatgtgggacatataa 20826229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 463 - 575
Target Start/End: Complemental strand, 49303016 - 49302902
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctctta--tttataataaattcaacatttacttttctatccgatgtgagacatata 560  Q
    |||||| |||||  |||||  ||||||| ||||||| |||||||||||||  ||||||| |  |||||| ||||||||| |||  |||||| ||||||||    
T  49303016 accacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttttataagatgttcaacctttacttttttatttgatgtgggacatata 49302917  T
Q  561 agtcatacttgcaca 575  Q
    | ||| |||| ||||    
T  49302916 actcacacttacaca 49302902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 463 - 578
Target Start/End: Complemental strand, 50002536 - 50002421
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||| | |||| || ||||||||||||| ||| ||    |||||| |||||| || |||||||||||||||||||||     
T  50002536 accacactcttacccaaaaccttaagacaatggatttatgggtcctcttacttaaaaagtgttcaacctttactcttttatccgatgtgagacatataac 50002437  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||||| ||||    
T  50002436 tcacacttgcaaacaa 50002421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 524 - 578
Target Start/End: Complemental strand, 3700414 - 3700360
Alignment:
Q  524 ttcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||||||||| || ||||||||||  ||||||||| ||| ||||||||||||    
T  3700414 ttcaacatttactcttttatccgatgtaggacatataactcacacttgcacacaa 3700360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 484 - 578
Target Start/End: Complemental strand, 36572108 - 36572014
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| |||| || ||||||| ||||| ||||||    ||||||||||||| || ||| ||||||| ||||||||| ||| ||||| ||||||    
T  36572108 ttaaggcaatggatttatgggtcttcttacttataaggtgttcaacatttactcttttattcgatgtgggacatataactcacacttgtacacaa 36572014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 524 - 578
Target Start/End: Original strand, 45489438 - 45489492
Alignment:
Q  524 ttcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||||| |||||| || ||||||||||||||||||||| ||| ||||| ||||||    
T  45489438 ttcaacctttactcttttatccgatgtgagacatataattcacacttgtacacaa 45489492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 524 - 578
Target Start/End: Complemental strand, 52884744 - 52884690
Alignment:
Q  524 ttcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||||| |||||| || ||||||||||| ||||||||| ||| ||||||||||||    
T  52884744 ttcaacctttactattttatccgatgtgggacatataactcacacttgcacacaa 52884690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 484 - 558
Target Start/End: Complemental strand, 54109002 - 54108928
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacata 558  Q
    ||||||| ||||||| ||||||||||||| ||||||    |||||| |||||| || ||||||||||| ||||||    
T  54109002 ttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttactattttatccgatgtgggacata 54108928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 504 - 561
Target Start/End: Original strand, 6975543 - 6975600
Alignment:
Q  504 gtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataa 561  Q
    ||||||||| |||||| | ||||||| |||||| || |||| ||||||||||||||||    
T  6975543 gtcctcttacttataagatattcaacctttactattttatcggatgtgagacatataa 6975600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 389 - 446
Target Start/End: Original strand, 51768029 - 51768086
Alignment:
Q  389 agtagatgttggatcataaggggagttcgggggatcgtccacatcgaggttagaacaa 446  Q
    |||| ||||||| |||| |||| |||| ||| || |||||||||||||||||||||||    
T  51768029 agtatatgttgggtcatgagggaagtttgggagaccgtccacatcgaggttagaacaa 51768086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 1e-19; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 484 - 578
Target Start/End: Complemental strand, 16569285 - 16569191
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||||||| ||||||||||||| ||||||   ||||||| |||||| |||||||||||||||||||||||| ||| ||||||| ||||    
T  16569285 ttaaggcaatgggtttatgggtcctcttacttataaggtattcaacctttactgttctatccgatgtgagacatataactcacacttgcatacaa 16569191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 484 - 578
Target Start/End: Original strand, 16596377 - 16596471
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||||||| ||||||||||||| ||||||   ||||||| |||||| |||||||||||||||||||||||| ||| ||||||| ||||    
T  16596377 ttaaggcaatgggtttatgggtcctcttacttataaggtattcaacctttactgttctatccgatgtgagacatataactcacacttgcatacaa 16596471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 485 - 578
Target Start/End: Original strand, 28301613 - 28301706
Alignment:
Q  485 taaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||||| ||||||| ||||||||||||| ||||||    |||| | ||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  28301613 taaggcaatgggtttatgggtcctcttacttataaggtgttcagcttttacttttctatccgatgtgagacatataactcacacttgcacacaa 28301706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 463 - 578
Target Start/End: Complemental strand, 7517690 - 7517575
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||| ||||||| ||||||||||||| ||||||    |||||| |||||| || ||||||||||| |||||||||     
T  7517690 accacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttactcttttatccgatgtgggacatataac 7517591  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||||||||||    
T  7517590 tcacacttgcacacaa 7517575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 484 - 571
Target Start/End: Complemental strand, 47129184 - 47129097
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttg 571  Q
    |||| |||||||||| ||||||||||||| |||||| |  |||||| |||||| || ||||||||||||||||||||| ||| |||||    
T  47129184 ttaaagcgatgggtttatgggtcctcttacttataagaggttcaacctttactattttatccgatgtgagacatataactcacacttg 47129097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 484 - 578
Target Start/End: Original strand, 1085685 - 1085779
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||||||| ||||||||||||| ||||||    |||||| |||||| || ||||||||||| ||||||||| ||| ||||||||||||    
T  1085685 ttaaggcaatgggtttatgggtcctcttacttataaagtgttcaacctttactattttatccgatgtgggacatataactcacacttgcacacaa 1085779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 478 - 578
Target Start/End: Complemental strand, 24177530 - 24177430
Alignment:
Q  478 aaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacaca 577  Q
    |||| |||||||| ||||||| |||||||| |||| ||||||    |||| | |||||| || ||||||||||| ||||||||| |||||||||||||||    
T  24177530 aaaactttaaggcaatgggtttatgggtccgcttacttataaggtgttcagcctttactcttttatccgatgtgggacatataactcatacttgcacaca 24177431  T
Q  578 a 578  Q
    |    
T  24177430 a 24177430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 492 - 580
Target Start/End: Original strand, 40230368 - 40230456
Alignment:
Q  492 atgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaata 580  Q
    ||||||| ||||||||||||| |||||| |  |||||| ||||||||| ||| ||||||| ||||||||| | | ||||||||||||||    
T  40230368 atgggtttatgggtcctcttacttataagatgttcaacttttacttttttattcgatgtgggacatataacttacacttgcacacaata 40230456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 463 - 578
Target Start/End: Complemental strand, 7554135 - 7554020
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||| ||||||| |||| |||||||| ||||||    |||||| |||||| || ||||||||||| |||||||||     
T  7554135 accacactcttacccaaaaccttaaggctatgggtttatggatcctcttacttataaggtgttcaacctttactattttatccgatgtgggacatataac 7554036  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||||||||||    
T  7554035 tcacacttgcacacaa 7554020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 463 - 578
Target Start/End: Original strand, 8128489 - 8128604
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||| |||||  ||||||  ||||||| |||||||||||||  |||||    |||||| |||| ||||||||||||| || |||||||||     
T  8128489 accacactcttaaccaaaaccttaaggttatgggtttatgggtcctcttacatataaggtgttcaacctttatttttctatccgatatgggacatataac 8128588  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||||||||||    
T  8128589 tcacacttgcacacaa 8128604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 463 - 561
Target Start/End: Complemental strand, 6054670 - 6054572
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataa 561  Q
    |||||| |||||  |||||  ||||||| ||| ||| ||||||||||||| ||||||    ||||||||||||| || |||||||||||||||||||||    
T  6054670 accacactcttacccaaaaccttaaggcaatgtgtttatgggtcctcttacttataaggtgttcaacatttactattttatccgatgtgagacatataa 6054572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 484 - 578
Target Start/End: Original strand, 40094843 - 40094937
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||| ||||||||| ||||||||||||| ||||||    || ||| |||||| || ||| ||||||||||||||||| ||| ||||||||||||    
T  40094843 ttaagacgatgggtttatgggtcctcttacttataaggtgttgaacctttactcttttattcgatgtgagacatataactcacacttgcacacaa 40094937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 478 - 578
Target Start/End: Original strand, 41910657 - 41910757
Alignment:
Q  478 aaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacaca 577  Q
    ||||| ||||| | ||||||| ||||||||||| | ||||||   ||||||| |||||| || ||||||||||| ||||||||| ||| |||| ||||||    
T  41910657 aaaatcttaagccaatgggtttatgggtcctctcagttataaggtattcaacctttactcttttatccgatgtgggacatataactcacacttacacaca 41910756  T
Q  578 a 578  Q
    |    
T  41910757 a 41910757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 463 - 578
Target Start/End: Complemental strand, 30244380 - 30244265
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||| ||||||| ||| ||||||||| ||||||    |||||| |||||| || ||||||||||| |||||||||     
T  30244380 accacactcttacccaaaaccttaaggcaatgggtttatgagtcctcttacttataaggtcttcaacctttactcttttatccgatgtgggacatataac 30244281  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||| ||||||    
T  30244280 tcacacttgtacacaa 30244265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 463 - 578
Target Start/End: Original strand, 34218082 - 34218197
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||| | ||||||| ||| ||||||| | ||||||    |||||||||||||||| |||||||||||||||||||||     
T  34218082 accacactcttacccaaaaccttaagacaatgggtttatgagtcctctcacttataaggtgttcaacatttacttttttatccgatgtgagacatataac 34218181  T
Q  563 tcatacttgcacacaa 578  Q
    ||| | ||| ||||||    
T  34218182 tcacatttgtacacaa 34218197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 484 - 578
Target Start/End: Original strand, 22566731 - 22566825
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||||||| ||||||||||||| ||||||    |||||| |||||| || ||||||||||| ||||||| | ||| ||||||| ||||    
T  22566731 ttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttactcttttatccgatgtgggacatattactcacacttgcatacaa 22566825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 484 - 580
Target Start/End: Complemental strand, 36623049 - 36622953
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaata 580  Q
    ||||||| |||| || |||| ||||| || |||||| |  || ||| |||||| || ||||||||||| ||||||||| ||| ||||||||||||||    
T  36623049 ttaaggcaatggatttatggatcctcctacttataaaatgtttaacctttactattttatccgatgtgggacatataactcacacttgcacacaata 36622953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 37393231 - 37393187
Alignment:
Q  403 cataaggggagttcgggggatcgtccacatcgaggttagaacaac 447  Q
    |||||||| || |||||||||||||||||||||||||||| ||||    
T  37393231 cataagggaaggtcgggggatcgtccacatcgaggttagagcaac 37393187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 463 - 578
Target Start/End: Original strand, 23425 - 23540
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||| || |||| ||||||||||||| ||||||    |||||| |||||| || |||||||||||  ||||||||     
T  23425 accacactcttacccaaaaccttaaggcaataggtttatgggtcctcttacttataaggtgttcaacctttactattgtatccgatgtggaacatataac 23524  T
Q  563 tcatacttgcacacaa 578  Q
    ||| | ||||||||||    
T  23525 tcacaattgcacacaa 23540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 503 - 578
Target Start/End: Complemental strand, 30244771 - 30244696
Alignment:
Q  503 ggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||||||||||||||||    |||||| |||||| || ||||| ||||| ||||||||| ||| ||||||||||||    
T  30244771 ggtcctcttatttataaggtgttcaacctttactcttttatccaatgtgggacatataactcacacttgcacacaa 30244696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 531 - 578
Target Start/End: Original strand, 36967345 - 36967392
Alignment:
Q  531 tttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||||| ||||||||||||||||||||| ||| ||||| ||||||    
T  36967345 tttacttttttatccgatgtgagacatataactcacacttgtacacaa 36967392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 463 - 578
Target Start/End: Complemental strand, 45754825 - 45754711
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||| ||||||| ||| ||| ||||| ||||||    ||||||||||||| || ||||||||||| |||||||||     
T  45754825 accacactcttacccaaaaccttaaggctatgggtttatgagtcatcttacttataaggtgttcaacatttactattttatccgatgtg-gacatataac 45754727  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||| ||||||    
T  45754726 tcacacttgtacacaa 45754711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 524 - 578
Target Start/End: Original strand, 118410 - 118464
Alignment:
Q  524 ttcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||||| |||||||||||||| |||||| ||||||||| | | ||||||||||||    
T  118410 ttcaacctttacttttctatctgatgtgggacatataacttacacttgcacacaa 118464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 534 - 576
Target Start/End: Complemental strand, 10341871 - 10341829
Alignment:
Q  534 acttttctatccgatgtgagacatataagtcatacttgcacac 576  Q
    |||||||||||||||||||||||||||| | ||| ||||||||    
T  10341871 acttttctatccgatgtgagacatataacttatatttgcacac 10341829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 524 - 578
Target Start/End: Original strand, 36109026 - 36109080
Alignment:
Q  524 ttcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||||| |||||| || |||||||||||||| |||||| ||| ||||||||||||    
T  36109026 ttcaacctttactcttttatccgatgtgagaaatataactcacacttgcacacaa 36109080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 500 - 578
Target Start/End: Complemental strand, 45434709 - 45434631
Alignment:
Q  500 atgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||||||||| ||||||    |||||| ||||||||| ||||||||||| ||||||||| | | ||||| ||||||    
T  45434709 atgggtcctcttacttataaggtgttcaacctttacttttttatccgatgtgggacatataacttacacttgtacacaa 45434631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 484 - 573
Target Start/End: Original strand, 37533079 - 37533168
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgca 573  Q
    ||||||| ||| ||| ||||||||||||| ||||||    |||||| |||||| || ||||| ||||| ||||||||| ||| |||||||    
T  37533079 ttaaggcaatgagtttatgggtcctcttacttataaggtgttcaacctttactattttatccaatgtgggacatataactcacacttgca 37533168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 48; Significance: 7e-18; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 463 - 578
Target Start/End: Complemental strand, 5467 - 5352
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||| ||||||| ||||||| ||||||||||||| ||||||    |||||| |||||| ||||||||||||||  ||||||||     
T  5467 accacactcttatccaaaatcttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttactgttctatccgatgtggaacatataac 5368  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||||||||||    
T  5367 tcacacttgcacacaa 5352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 485 - 578
Target Start/End: Complemental strand, 5070 - 4977
Alignment:
Q  485 taaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||||| ||| ||| ||||||| | ||| |||||| | ||| ||| |||||| |||| ||||||||||||||||||| ||| ||||||||||||    
T  5070 taaggcaatgagtttatgggtctttttacttataagatattaaacctttactgttctctccgatgtgagacatataattcacacttgcacacaa 4977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 7e-18; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 463 - 578
Target Start/End: Original strand, 2579920 - 2580035
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    ||||||||||||  |||||  |||||||  |||||| ||||||||||||| |||||||   |||||| |||||| || ||||||||||| |||||||||     
T  2579920 accacattcttacccaaaaccttaaggctgtgggtttatgggtcctcttacttataatgtgttcaacctttactcttttatccgatgtgggacatataac 2580019  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||||||||||    
T  2580020 tcacacttgcacacaa 2580035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 484 - 578
Target Start/End: Original strand, 10074060 - 10074154
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||||||| ||||||||||||| ||||||    |||||| ||||||||||||||||||||| || |||||| |||  |||||||||||    
T  10074060 ttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacgtttacttttctatccgatgtgggatatataactcacccttgcacacaa 10074154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 465 - 573
Target Start/End: Complemental strand, 26544157 - 26544049
Alignment:
Q  465 cacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtc 564  Q
    |||| ||||| ||||||  |||||||| |||||| ||||||||||||| ||||||    |||||| |||||| || ||||||||||| ||||||||| ||    
T  26544157 cacactcttactcaaaaccttaaggcggtgggtttatgggtcctcttacttataacgtgttcaacctttactattttatccgatgtgggacatataactc 26544058  T
Q  565 atacttgca 573  Q
    | |||||||    
T  26544057 acacttgca 26544049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 463 - 578
Target Start/End: Original strand, 10074411 - 10074526
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||| ||| ||| ||||||||||||| ||||||    |||||| ||||||||||||||||||||| ||| | |||     
T  10074411 accacactcttacccaaaaccttaaggcaatgagtttatgggtcctcttacttataaggtgttcaacctttacttttctatccgatgtgggacctctaac 10074510  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||||||||||    
T  10074511 tcacacttgcacacaa 10074526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 463 - 573
Target Start/End: Complemental strand, 35210314 - 35210204
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||| |||| || ||||||||||||| ||||||    |||||| |||||| || |||||||||||||||||||||     
T  35210314 accacactcttacccaaaaccttaaggcaatggttttatgggtcctcttacttataaggtgttcaacctttactattttatccgatgtgagacatataac 35210215  T
Q  563 tcatacttgca 573  Q
    ||| |||||||    
T  35210214 tcacacttgca 35210204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 395 - 447
Target Start/End: Complemental strand, 2843736 - 2843684
Alignment:
Q  395 tgttggatcataaggggagttcgggggatcgtccacatcgaggttagaacaac 447  Q
    ||||||||||| ||||||||| |||||| |||||||||||||| |||||||||    
T  2843736 tgttggatcatgaggggagttagggggaccgtccacatcgaggctagaacaac 2843684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 463 - 578
Target Start/End: Original strand, 2578883 - 2578997
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||  ||| ||| |||| |||||||||||||||   ||||||||||||||||| ||||||||| | |||||||||     
T  2578883 accacactcttacccaaaaccttaaggtaatgagtttatggatcctcttatttataaggtattcaacatttactttt-tatccgatgagggacatataaa 2578981  T
Q  563 tcatacttgcacacaa 578  Q
    ||| |||||| |||||    
T  2578982 tcacacttgctcacaa 2578997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 463 - 578
Target Start/End: Complemental strand, 16107788 - 16107673
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||| ||||||| ||| ||||||||| ||||||    || ||| ||||||||| |||||||||||| ||||||||     
T  16107788 accacactcttacccaaaaccttaaggcaatgggtttatgagtcctcttacttataaggtgtttaacctttacttttttatccgatgtgacacatataac 16107689  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||| ||||||    
T  16107688 tcacacttgtacacaa 16107673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 463 - 573
Target Start/End: Complemental strand, 2378236 - 2378126
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    ||||||||||||   ||||  ||||||  ||||||| ||||||||||||| ||||||    |||||| |||||| || ||||||||||| |||||||||     
T  2378236 accacattcttacctaaaaccttaaggtaatgggtttatgggtcctcttacttataaggtgttcaacctttactattttatccgatgtgggacatataac 2378137  T
Q  563 tcatacttgca 573  Q
    ||| |||||||    
T  2378136 tcacacttgca 2378126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 463 - 573
Target Start/End: Original strand, 14748386 - 14748496
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  |||| || ||| ||| ||||||||||||||||||||    |||||| |||||| || ||||||||||| |||||||||     
T  14748386 accacactcttacccaaaaccttaacgcaatgagtttatgggtcctcttatttataaggtgttcaacctttactattttatccgatgtgggacatataac 14748485  T
Q  563 tcatacttgca 573  Q
    ||| |||||||    
T  14748486 tcacacttgca 14748496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 484 - 578
Target Start/End: Complemental strand, 16108152 - 16108058
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||||||| ||||||||||||| ||||||    ||||||||||||| || |||| ||||||  |||||||| ||| ||||| ||||||    
T  16108152 ttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacatttactcttttatctgatgtggaacatataactcacacttgtacacaa 16108058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 463 - 573
Target Start/End: Complemental strand, 29518613 - 29518503
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||  ||||||| ||||||||||||| ||||||    |||||| |||||| || ||||||||||| |||||||||     
T  29518613 accacactcttacccaaaaccttaaggtaatgggtttatgggtcctcttacttataaggtgttcaacctttactattttatccgatgtgggacatataac 29518514  T
Q  563 tcatacttgca 573  Q
    ||| |||||||    
T  29518513 tcacacttgca 29518503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 463 - 573
Target Start/End: Complemental strand, 29519030 - 29518920
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||  ||||||| ||||||||||||| ||||||    |||||| |||||| || ||||||||||| |||||||||     
T  29519030 accacactcttacccaaaaccttaaggtaatgggtttatgggtcctcttacttataaggtgttcaacctttactattttatccgatgtgggacatataac 29518931  T
Q  563 tcatacttgca 573  Q
    ||| |||||||    
T  29518930 tcacacttgca 29518920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 463 - 573
Target Start/End: Complemental strand, 32741289 - 32741179
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||  ||||||| ||||||||||||| ||||||    |||||| |||||| || ||||||||||| |||||||||     
T  32741289 accacactcttacccaaaaccttaaggtaatgggtttatgggtcctcttacttataaggtgttcaacctttactattttatccgatgtgggacatataac 32741190  T
Q  563 tcatacttgca 573  Q
    ||| |||||||    
T  32741189 tcacacttgca 32741179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 463 - 571
Target Start/End: Complemental strand, 2377864 - 2377756
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||| ||||||| ||||||||||||| ||||||    |||||| |||||| || || |||||||| |||||||||     
T  2377864 accacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttactcttttaaccgatgtgggacatataac 2377765  T
Q  563 tcatacttg 571  Q
    ||| |||||    
T  2377764 tcacacttg 2377756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 395 - 447
Target Start/End: Complemental strand, 16455088 - 16455036
Alignment:
Q  395 tgttggatcataaggggagttcgggggatcgtccacatcgaggttagaacaac 447  Q
    |||||||| || ||||||| |||||||| |||||||||||||| |||||||||    
T  16455088 tgttggattatgaggggagctcgggggaccgtccacatcgaggctagaacaac 16455036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 463 - 578
Target Start/End: Original strand, 2578491 - 2578605
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||| ||||||| ||||||||||||| ||||||    |||||| |||||| || |||||| |||| |||||||||     
T  2578491 accacactcttacccaaaaccttaaggctatgggtttatgggtcctcttacttataaagtgttcaacctttactcttttatccg-tgtgggacatataac 2578589  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||| ||||||    
T  2578590 tcacacttgtacacaa 2578605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 486 - 573
Target Start/End: Complemental strand, 3409747 - 3409660
Alignment:
Q  486 aaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgca 573  Q
    ||||| ||||||| ||||||||||||| |||||| |  |||||| |||||| || |||| ||||||  |||||||| ||| |||||||    
T  3409747 aaggcaatgggtttatgggtcctcttacttataagatgttcaacttttactattttatctgatgtggtacatataactcacacttgca 3409660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 463 - 573
Target Start/End: Complemental strand, 1846858 - 1846748
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||| |||| || |||||| |||||| ||||||    |||||| |||||| || |||||||||||||||||| ||     
T  1846858 accacactcttatccaaaaccttaaggcaatggatttatgggtgctcttacttataaggtgttcaacctttactattttatccgatgtgagacatagaat 1846759  T
Q  563 tcatacttgca 573  Q
    ||| |||||||    
T  1846758 tcacacttgca 1846748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 463 - 573
Target Start/End: Complemental strand, 3409369 - 3409259
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||| ||| ||| ||||||||||||| ||||||    |||||| |||||| || |||| |||||| |||||||||     
T  3409369 accacactcttacccaaaaccttaaggcaatgagtttatgggtcctcttacttataaggtgttcaacctttactattttatctgatgtgggacatataac 3409270  T
Q  563 tcatacttgca 573  Q
    ||| |||||||    
T  3409269 tcacacttgca 3409259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 464 - 578
Target Start/End: Complemental strand, 16454684 - 16454570
Alignment:
Q  464 ccacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagt 563  Q
    ||||| |||||  |||||| ||||||| ||||||| ||||||||||||| ||||||    |||||| |||| | || |||| |||||| |||| |||| |    
T  16454684 ccacactcttatccaaaatcttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacttttattcttttatctgatgtgggacacataact 16454585  T
Q  564 catacttgcacacaa 578  Q
    || ||||| ||||||    
T  16454584 cacacttgtacacaa 16454570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 527 - 561
Target Start/End: Original strand, 17135181 - 17135215
Alignment:
Q  527 aacatttacttttctatccgatgtgagacatataa 561  Q
    ||||||||||| |||||||||||||||||||||||    
T  17135181 aacatttacttctctatccgatgtgagacatataa 17135215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 7e-18; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 463 - 578
Target Start/End: Complemental strand, 41632892 - 41632777
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||| |||| ||  |||||| ||||||||||||| ||||||    |||||| |||||||||||||||||||||||||||||||     
T  41632892 accacactcttacccaaaatcttaaagcattgggtttatgggtcctcttacttataaggtgttcaacctttacttttctatccgatgtgagacatataac 41632793  T
Q  563 tcatacttgcacacaa 578  Q
    | | ||||||||||||    
T  41632792 ttacacttgcacacaa 41632777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 463 - 561
Target Start/End: Original strand, 9498702 - 9498800
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataa 561  Q
    |||||| |||||  |||||| ||||||| ||||||| ||||||||||||| ||||||    |||||| |||||| ||||||| ||||||||||||||||    
T  9498702 accacactcttacccaaaatcttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttactattctatctgatgtgagacatataa 9498800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 484 - 578
Target Start/End: Original strand, 26075231 - 26075325
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||||||| ||||||||||||| ||||||    |||||| |||||| || ||||||||||||||||||||| ||| ||||| ||||||    
T  26075231 ttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttactcttttatccgatgtgagacatataaatcacacttgtacacaa 26075325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 463 - 578
Target Start/End: Original strand, 26074194 - 26074309
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||| ||||||| |||||||||||||  ||| |    |||||| ||||||||| ||||||||||| |||||||||     
T  26074194 accacactcttacccaaaaccttaaggcaatgggttcatgggtcctcttacatatgaggtgttcaacctttacttttttatccgatgtgtgacatataac 26074293  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||||||||||    
T  26074294 tcacacttgcacacaa 26074309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 503 - 578
Target Start/End: Complemental strand, 39309754 - 39309679
Alignment:
Q  503 ggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||||||||||||||   ||||||||||||  || ||||||||||| ||||||||| ||||||||| ||||||    
T  39309754 ggtcctcttatttataatgtgttcaacatttacccttttatccgatgtgggacatataactcatacttgtacacaa 39309679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 524 - 578
Target Start/End: Original strand, 36568676 - 36568730
Alignment:
Q  524 ttcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||||| ||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  36568676 ttcaacttttacttttctatccgatgtgggacatataactcacacttgcacacaa 36568730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 463 - 561
Target Start/End: Complemental strand, 41170744 - 41170646
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataa 561  Q
    |||||| |||||  |||||  ||||||| ||||||| ||||||||||||| |||||| |  |||||| |||||| || ||||||||||| |||||||||    
T  41170744 accacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataagatgttcaacctttactattttatccgatgtgggacatataa 41170646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 534 - 578
Target Start/End: Complemental strand, 31509662 - 31509618
Alignment:
Q  534 acttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||    
T  31509662 acttttctatccgatgtgagacatataactcacacttgcacacaa 31509618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 495 - 578
Target Start/End: Original strand, 1028597 - 1028680
Alignment:
Q  495 ggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||| ||||||||||||| ||||||    |||| | ||||||||||||||||||||| ||||||||| ||| ||||| ||||||    
T  1028597 ggtttatgggtcctcttacttataaagtgttcatcctttacttttctatccgatgtgggacatataactcacacttgtacacaa 1028680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 463 - 578
Target Start/End: Complemental strand, 15370209 - 15370094
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  |||||||  ||| || ||||||||||||| |||||| |  |||||| |||||| || ||| ||||||| |||||||||     
T  15370209 accacactcttacccaaaaccttaaggctgtggatttatgggtcctcttacttataagatgttcaacctttactattttattcgatgtgggacatataac 15370110  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||||||||||    
T  15370109 tcacacttgcacacaa 15370094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 486 - 577
Target Start/End: Original strand, 40296386 - 40296477
Alignment:
Q  486 aaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacaca 577  Q
    ||||| ||||||| ||||||||||||| ||||||    |||||| ||| || || ||||||||||| ||||||||| ||| |||||||||||    
T  40296386 aaggcaatgggtttatgggtcctcttacttataaggtgttcaaccttttctattttatccgatgtgggacatataactcacacttgcacaca 40296477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 504 - 571
Target Start/End: Complemental strand, 42524785 - 42524719
Alignment:
Q  504 gtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttg 571  Q
    ||||||||||| |||| |  |||||| ||||||||||||||||||||||||||||||| ||| |||||    
T  42524785 gtcctcttattcataagatgttcaac-tttacttttctatccgatgtgagacatataattcacacttg 42524719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 484 - 578
Target Start/End: Complemental strand, 6224285 - 6224191
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||||||| ||| ||||||||||||| ||||||    |||||| |||||| || ||||||| ||| ||||||||| ||| ||||| ||||||    
T  6224285 ttaaggcgatgagtttatgggtcctcttacttataaggtgttcaacctttactcttttatccgaagtgggacatataactcacacttgtacacaa 6224191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 484 - 578
Target Start/End: Complemental strand, 42508701 - 42508607
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||||||| ||| ||||||||| |||| | |  || ||| ||||||||||||||||||||| || |||||| ||| ||||| ||||||    
T  42508701 ttaaggcaatgggtttatgagtcctcttacttattagatgtttaacctttacttttctatccgatgtgggatatataattcacacttgtacacaa 42508607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 478 - 570
Target Start/End: Original strand, 41635254 - 41635346
Alignment:
Q  478 aaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatactt 570  Q
    ||||||||||| | |||| || |||| |||||||||||||||    ||||||||||||| || |||| |||| || |||||||| ||||||||    
T  41635254 aaaattttaagacaatggatttatggatcctcttatttataaggtgttcaacatttactcttttatctgatgggaaacatataactcatactt 41635346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 396 - 447
Target Start/End: Original strand, 3295323 - 3295374
Alignment:
Q  396 gttggatcataaggggagttcgggggatcgtccacatcgaggttagaacaac 447  Q
    |||||||||| ||||||||  |||||| |||||||||||||| |||||||||    
T  3295323 gttggatcatgaggggagtgagggggaccgtccacatcgaggctagaacaac 3295374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 463 - 578
Target Start/End: Original strand, 12662700 - 12662815
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||| | |||| || ||||||  ||||| |||||| |  |||||| |||||| || ||||||||||| |||||||||     
T  12662700 accacactcttacccaaaaacttaagacaatggatttatgggttttcttacttataaaatgttcaacctttactattttatccgatgtgggacatataac 12662799  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||||||||||    
T  12662800 tcacacttgcacacaa 12662815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 495 - 578
Target Start/End: Original strand, 13415840 - 13415923
Alignment:
Q  495 ggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||| ||||||||||||| ||||||    |||||| ||||||  | ||||||||||| ||||||||| ||| ||||||||||||    
T  13415840 ggtttatgggtcctcttacttataaggtgttcaacctttactaatttatccgatgtgggacatataactcacacttgcacacaa 13415923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 484 - 571
Target Start/End: Original strand, 18603189 - 18603276
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttg 571  Q
    ||||||| ||||||| ||||||||||||| ||||||    |||||| |||||| || |||| |||||| ||||||||| ||| |||||    
T  18603189 ttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttactattttatctgatgtgggacatataactcacacttg 18603276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 463 - 578
Target Start/End: Complemental strand, 26074722 - 26074607
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||| ||||||| ||||||||||||| ||||||    |||||| |||||| || |||||||| ||  ||||||||     
T  26074722 accacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttactcttttatccgatatggaacatataac 26074623  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||| ||||||    
T  26074622 tcacacttgtacacaa 26074607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 463 - 562
Target Start/End: Complemental strand, 33747881 - 33747782
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||| ||||||| ||| ||| |||| |||||||| ||||||   ||| ||| |||||| || ||||||||||| ||||||||||    
T  33747881 accacactcttatccaaaatcttaaggcaatgagtttatggatcctcttacttataaagtatttaacctttactattttatccgatgtgggacatataag 33747782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 463 - 570
Target Start/End: Complemental strand, 35914959 - 35914852
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    ||||||||||||  ||| | |||| ||| |||| || | ||||| ||||| |||||| |  |||||| |||||| || ||||||||||| |||||||||     
T  35914959 accacattcttatccaataatttagggcaatggatttacgggtcttcttacttataaaatgttcaacctttactcttttatccgatgtgtgacatataac 35914860  T
Q  563 tcatactt 570  Q
    ||||||||    
T  35914859 tcatactt 35914852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 484 - 578
Target Start/End: Complemental strand, 299578 - 299484
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||| ||| ||||||| ||||| ||||||    |||||| |||||| || ||||||||||| ||||||||| ||| |||||| |||||    
T  299578 ttaaggctatgagtttatgggtcatcttacttataaggtgttcaacctttactgttttatccgatgtgggacatataactcacacttgcgcacaa 299484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 524 - 573
Target Start/End: Complemental strand, 623867 - 623818
Alignment:
Q  524 ttcaacatttacttttctatccgatgtgagacatataagtcatacttgca 573  Q
    |||||| |||||| || ||||||||||||||||||||| ||| |||||||    
T  623867 ttcaacctttactattatatccgatgtgagacatataactcacacttgca 623818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 484 - 561
Target Start/End: Original strand, 34753094 - 34753171
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataa 561  Q
    ||||||| || |||| ||||||| ||||| ||||||    |||||| ||||||||||||||| ||||| |||||||||    
T  34753094 ttaaggcaatcggtttatgggtcttcttacttataaggtgttcaacttttacttttctatccaatgtgggacatataa 34753171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 3e-17; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 500 - 578
Target Start/End: Original strand, 22077580 - 22077658
Alignment:
Q  500 atgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||||||||| ||||||    |||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  22077580 atgggtcctcttacttataaggtgttcaacctttacttttctatccgatgtgagacatataactcacacttgcacacaa 22077658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 484 - 578
Target Start/End: Original strand, 41184494 - 41184588
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||||||| ||||||||||||| ||||||    |||||| |||||| || ||||||||||||||||||||| ||| ||||||||||||    
T  41184494 ttaaggcaatgggtttatgggtcctcttacttataaagtgttcaacctttactattttatccgatgtgagacatataactcacacttgcacacaa 41184588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 492 - 578
Target Start/End: Original strand, 21378118 - 21378204
Alignment:
Q  492 atgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||||||||||||| |||||| | ||||||| |||||| ||||||||||| || ||||||||| | | ||||||||||||    
T  21378118 atgggtttatgggtcctcttacttataagatattcaacctttactgttctatccgatctgggacatataactgacacttgcacacaa 21378204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 484 - 573
Target Start/End: Original strand, 44290527 - 44290616
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgca 573  Q
    ||||||| ||||||| ||||||||||||| |||||| |  |||||| |||||| || ||||||||||| ||||||||| ||| |||||||    
T  44290527 ttaaggcaatgggtttatgggtcctcttacttataagatgttcaacctttactattttatccgatgtgggacatataactcacacttgca 44290616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 463 - 578
Target Start/End: Complemental strand, 17294687 - 17294572
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||| ||||||| ||||||||||||| ||||||    |||||| |||||| || ||||||||||| |||||||||     
T  17294687 accacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataaagtgttcaacctttactcttttatccgatgtgggacatataac 17294588  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||| ||||||    
T  17294587 tcacacttgtacacaa 17294572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 507 - 578
Target Start/End: Original strand, 24600406 - 24600477
Alignment:
Q  507 ctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||||| ||||||||  |||||| |||||||||||||||||| || ||||||||| ||| ||||||||||||    
T  24600406 ctcttacttataatatgttcaacctttacttttctatccgatatgggacatataactcacacttgcacacaa 24600477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 463 - 578
Target Start/End: Complemental strand, 34365035 - 34364920
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||| ||||||| ||||||||||||| ||||||    |||||| |||| | || ||||||||||| |||||||||     
T  34365035 accacactcttacccaaaaccttaaggctatgggtttatgggtcctcttacttataaggtgttcaacctttattattttatccgatgtgtgacatataac 34364936  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||||||||||    
T  34364935 tcacacttgcacacaa 34364920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 463 - 578
Target Start/End: Complemental strand, 41157485 - 41157370
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| ||||| ||||||  | ||||| ||||||| ||||||||||||| ||||||    |||||| |||||| || |||| |||||| |||||||||     
T  41157485 accacactcttactcaaaacctaaaggcaatgggtttatgggtcctcttacttataaggtgttcaacttttactcttttatctgatgtgggacatataac 41157386  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||||||||||    
T  41157385 tcacacttgcacacaa 41157370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 484 - 578
Target Start/End: Complemental strand, 34364596 - 34364502
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||||||| | || |||||||| ||||||    |||||| |||||| || ||||||||||||||||||||| ||| ||||||||||||    
T  34364596 ttaaggctatgggtttacggatcctcttacttataaggtgttcaacctttactattttatccgatgtgagacatataactcacacttgcacacaa 34364502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 487 - 580
Target Start/End: Original strand, 22077900 - 22077993
Alignment:
Q  487 aggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaata 580  Q
    |||| ||| ||| ||||||||||||| |||||| |  |||||| |||| ||||||||||||| | | |||||||| ||| ||||||||||||||    
T  22077900 aggctatgagtttatgggtcctcttacttataagatgttcaacctttatttttctatccgatttaaaacatataactcacacttgcacacaata 22077993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 484 - 573
Target Start/End: Original strand, 44290894 - 44290983
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgca 573  Q
    ||||||| ||||||| ||||||||||||| ||||||    |||||| |||||| || ||||||||||| ||||||||| ||| |||||||    
T  44290894 ttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttactattttatccgatgtgggacatataactcacacttgca 44290983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 484 - 575
Target Start/End: Complemental strand, 41142461 - 41142370
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcaca 575  Q
    ||||||| ||||||| ||||||||| ||| ||||||    |||||| |||||| || ||||||||||| ||||||||| ||| |||||||||    
T  41142461 ttaaggcaatgggtttatgggtccttttacttataaggtgttcaacctttactgttttatccgatgtgggacatataactcacacttgcaca 41142370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 484 - 578
Target Start/End: Original strand, 5320034 - 5320128
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||| ||| ||||||||||| | ||||||    |||||| |||||||||||||||||||||  |||||||| ||| ||||||| ||||    
T  5320034 ttaaggctatgagtttatgggtcctctcacttataaggtgttcaacttttacttttctatccgatgtggaacatataactcacacttgcatacaa 5320128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 504 - 561
Target Start/End: Original strand, 5528843 - 5528900
Alignment:
Q  504 gtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataa 561  Q
    |||||||||||||||| |  |||||| |||||| || |||||||||||||||||||||    
T  5528843 gtcctcttatttataagatgttcaacctttactcttttatccgatgtgagacatataa 5528900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 463 - 578
Target Start/End: Complemental strand, 37556221 - 37556106
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttact-tttctatccgatgtgagacatataa 561  Q
    |||||| |||||  |||||  ||||||| ||||||| |||| |||||||| |||||| |  |||||| |||||| ||| ||||||||||| |||||||||    
T  37556221 accacactcttacccaaaaccttaaggctatgggtttatgg-tcctcttacttataagatgttcaacctttactatttttatccgatgtgggacatataa 37556123  T
Q  562 gtcatacttgcacacaa 578  Q
     ||| ||||| ||||||    
T  37556122 ctcacacttgtacacaa 37556106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 494 - 573
Target Start/End: Original strand, 3537226 - 3537305
Alignment:
Q  494 gggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgca 573  Q
    ||||| ||||||||||||| ||||||    |||||| |||||| || ||||||||||| ||||||||| ||| |||||||    
T  3537226 gggtttatgggtcctcttacttataaggtgttcaacctttactattttatccgatgtgggacatataactcacacttgca 3537305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 531 - 578
Target Start/End: Complemental strand, 44685498 - 44685451
Alignment:
Q  531 tttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||||||||||||||||| || ||||||||| ||| ||||||||||||    
T  44685498 tttacttttctatccgatatgggacatataactcacacttgcacacaa 44685451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 523 - 578
Target Start/End: Complemental strand, 45839676 - 45839622
Alignment:
Q  523 attcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| |||| |||||||||||||||| ||||||||| ||||||||| ||||||    
T  45839676 attcaaccttta-ttttctatccgatgtgggacatataactcatacttgtacacaa 45839622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 495 - 570
Target Start/End: Original strand, 50052103 - 50052178
Alignment:
Q  495 ggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatactt 570  Q
    |||| ||||||||||||| |||||| |  |||||| |||||| || ||||||||||| ||||||||| ||| ||||    
T  50052103 ggtttatgggtcctcttacttataagatgttcaacctttactattttatccgatgtgggacatataactcacactt 50052178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 524 - 578
Target Start/End: Original strand, 66581 - 66635
Alignment:
Q  524 ttcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||||| |||||||||||||||||| ||  |||||||| ||| ||||||||||||    
T  66581 ttcaacctttacttttctatccgatatggaacatataactcacacttgcacacaa 66635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 484 - 578
Target Start/End: Original strand, 3875400 - 3875494
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||||||| ||| ||||||||| ||||||    | |||| ||||||||| ||||||||||| ||||||||| | |  |||||||||||    
T  3875400 ttaaggcaatgggtttatgagtcctcttacttataaggtgtacaacctttacttttttatccgatgtgtgacatataactgactcttgcacacaa 3875494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 536 - 578
Target Start/End: Original strand, 22077243 - 22077285
Alignment:
Q  536 ttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||||||||||||||| ||||||||| ||| ||||||||||||    
T  22077243 ttttctatccgatgtgggacatataactcacacttgcacacaa 22077285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 484 - 578
Target Start/End: Original strand, 24132054 - 24132148
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||| ||| |||| ||| |||||||||||    |||||| ||||||||||||||||||| | ||||||||| ||| | ||||| ||||    
T  24132054 ttaaggcaatgagtttatggatccccttatttataaggtgttcaacctttacttttctatccgatgagggacatataactcacagttgcatacaa 24132148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 524 - 578
Target Start/End: Original strand, 39066309 - 39066363
Alignment:
Q  524 ttcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||||| |||||||||||||||||||||  | |||||| ||| ||||||||||||    
T  39066309 ttcaacctttacttttctatccgatgtggaatatataactcacacttgcacacaa 39066363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 534 - 579
Target Start/End: Original strand, 1187483 - 1187528
Alignment:
Q  534 acttttctatccgatgtgagacatataagtcatacttgcacacaat 579  Q
    |||||| ||| ||||||||||||||||| ||| |||||||||||||    
T  1187483 acttttatattcgatgtgagacatataattcacacttgcacacaat 1187528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 406 - 447
Target Start/End: Complemental strand, 11977450 - 11977409
Alignment:
Q  406 aaggggagttcgggggatcgtccacatcgaggttagaacaac 447  Q
    ||||| ||||||||||| |||||||||||||| |||||||||    
T  11977450 aagggaagttcgggggaccgtccacatcgaggctagaacaac 11977409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 500 - 577
Target Start/End: Complemental strand, 45084455 - 45084378
Alignment:
Q  500 atgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacaca 577  Q
    ||||||||||||| ||||||    |||||| |||||| || ||||||||||| || |||||| ||| |||||||||||    
T  45084455 atgggtcctcttacttataaggtgttcaacctttactgttttatccgatgtgggagatataactcacacttgcacaca 45084378  T

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Target: chr8 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 463 - 578
Target Start/End: Complemental strand, 30359381 - 30359266
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||| ||||||| ||||||||||||  ||||||    ||||||||||||| || |||||||||||||||||||||     
T  30359381 accacactcttacccaaaaccttaaggctatgggtttatgggtcctcttgcttataaggtgttcaacatttactcttttatccgatgtgagacatataac 30359282  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||| ||||||    
T  30359281 tcacacttgtacacaa 30359266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 493 - 580
Target Start/End: Complemental strand, 40518662 - 40518575
Alignment:
Q  493 tgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaata 580  Q
    |||||| ||||||||||||||||||||    |||||| |||||||||||||| |||||| ||||||||| ||| ||||| ||||||||    
T  40518662 tgggtttatgggtcctcttatttataaggtgttcaacctttacttttctatctgatgtgggacatataactcacacttgaacacaata 40518575  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 484 - 578
Target Start/End: Complemental strand, 9608834 - 9608740
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||||| |||||||| ||||||| ||||| ||||||    |||||| |||||||||||||||||| || ||||||||| ||| ||||||||||||    
T  9608834 ttaaggtgatgggtttatgggtcatcttacttataaggtgttcaacctttacttttctatccgatatgggacatataactcacacttgcacacaa 9608740  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 477 - 578
Target Start/End: Complemental strand, 41972254 - 41972153
Alignment:
Q  477 caaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacac 576  Q
    ||||| |||| ||| ||||||| ||||||||| | | ||||||    |||||| ||||||||||||||||||||| ||||||||| ||| ||||||||||    
T  41972254 caaaactttatggcaatgggtttatgggtcctatcacttataaggtgttcaacctttacttttctatccgatgtgggacatataactcacacttgcacac 41972155  T
Q  577 aa 578  Q
    ||    
T  41972154 aa 41972153  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 463 - 578
Target Start/End: Original strand, 33113415 - 33113530
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||| ||||||| ||| ||| ||||||||||||| |||||| |  |||||| |||||| || ||||||||||  |||||||||     
T  33113415 accacactcttacccaaaatcttaaggcaatgagtttatgggtcctcttacttataagacgttcaacctttactattttatccgatgtaggacatataac 33113514  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||| ||||||    
T  33113515 tcaaacttgtacacaa 33113530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 463 - 570
Target Start/End: Original strand, 43274827 - 43274934
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| ||||| ||||||  ||||| | || |||| ||||||||||||| |||||||| ||||||| |||||| || |||| ||||||| ||||||||     
T  43274827 accacactcttactcaaaaccttaagacaataggtttatgggtcctcttacttataatatattcaacctttactcttttatctgatgtgaaacatataac 43274926  T
Q  563 tcatactt 570  Q
    ||| ||||    
T  43274927 tcacactt 43274934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 464 - 570
Target Start/End: Complemental strand, 147560 - 147454
Alignment:
Q  464 ccacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagt 563  Q
    ||||| |||||  ||||| |||||||| || |||| ||||||||||||||||||||    |||||| |||||| || ||||||||||| ||||||||| |    
T  147560 ccacactcttacccaaaactttaaggcaataggtttatgggtcctcttatttataaggtgttcaacctttactcttttatccgatgtgggacatataact 147461  T
Q  564 catactt 570  Q
    || ||||    
T  147460 cacactt 147454  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 484 - 578
Target Start/End: Complemental strand, 5420740 - 5420646
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||||||| ||| ||||||||| |||||| |  |||||| |||||| |||||||||||||| |||||||||  || ||||||| ||||    
T  5420740 ttaaggcaatgggtttatgagtcctcttacttataagatgttcaacctttactattctatccgatgtgggacatataatacacacttgcatacaa 5420646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 484 - 578
Target Start/End: Complemental strand, 9309444 - 9309350
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||| ||| | ||||||||||| ||||||    ||||||||||||| || ||||||||||| ||||||||| ||| ||||||||||||    
T  9309444 ttaaggcaatgagtttaagggtcctcttacttataaggtgttcaacatttactcttttatccgatgtgggacatataactcacacttgcacacaa 9309350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 484 - 561
Target Start/End: Original strand, 70343 - 70420
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataa 561  Q
    |||||||  |||||| ||||||||||||| |||||| |  ||||||||||||| || ||||||||||| |||||||||    
T  70343 ttaaggcagtgggtttatgggtcctcttacttataagatgttcaacatttactcttttatccgatgtgggacatataa 70420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 495 - 578
Target Start/End: Complemental strand, 8794189 - 8794106
Alignment:
Q  495 ggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||| ||| ||||||||| |||||| |  ||||||||||| | || ||||||||||||||||||||| ||| ||||| ||||||    
T  8794189 ggtttatgagtcctcttacttataagatgttcaacatttattcttttatccgatgtgagacatataactcacacttgtacacaa 8794106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 463 - 578
Target Start/End: Complemental strand, 30359719 - 30359604
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||| ||||||  ||||||| ||| ||||||||| ||||||    |||||| |||||| || |||| ||||||||||||||||     
T  30359719 accacactcttacccaaaatcttaaggttatgggtttatgagtcctcttacttataaggtgttcaacttttactcttttatctgatgtgagacatataac 30359620  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||| ||||||    
T  30359619 tcacacttgtacacaa 30359604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 524 - 579
Target Start/End: Original strand, 45122166 - 45122221
Alignment:
Q  524 ttcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaat 579  Q
    |||||| |||||| || ||||||||||||||||||||| ||| |||||||||||||    
T  45122166 ttcaacctttactattttatccgatgtgagacatataactcacacttgcacacaat 45122221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 524 - 578
Target Start/End: Complemental strand, 147878 - 147824
Alignment:
Q  524 ttcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||||||||||||||| |||| |||||| ||||||||| ||| ||||||||||||    
T  147878 ttcaacatttacttttttatcagatgtgggacatataactcacacttgcacacaa 147824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 484 - 578
Target Start/End: Original strand, 3038359 - 3038453
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||||||| ||||||||| ||| ||||||    |||||| |||||| || ||||||||||| ||||||||| ||| ||||| ||||||    
T  3038359 ttaaggcaatgggtttatgggtccttttacttataaagtgttcaacctttactattttatccgatgtgggacatataactcacacttgtacacaa 3038453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 484 - 550
Target Start/End: Complemental strand, 9609174 - 9609108
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgt 550  Q
    ||||||||||||||| ||||||| ||||| |||||| |  |||||| |||||||||||||| |||||    
T  9609174 ttaaggcgatgggtttatgggtcatcttacttataagatgttcaacctttacttttctatctgatgt 9609108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 478 - 578
Target Start/End: Original strand, 9620739 - 9620839
Alignment:
Q  478 aaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacaca 577  Q
    ||||| ||||||| ||| ||| ||||||||||| | ||||||     ||||| | |||||||||||| | |||||||||||||| ||| |||||||||||    
T  9620739 aaaatcttaaggcaatgagtttatgggtcctctcacttataaagtgatcaacttctacttttctatctgttgtgagacatataactcacacttgcacaca 9620838  T
Q  578 a 578  Q
    |    
T  9620839 a 9620839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 492 - 579
Target Start/End: Original strand, 1513992 - 1514079
Alignment:
Q  492 atgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaat 579  Q
    ||||||| | ||||||||||| ||||||    |||||| |||||| || ||||||||||| || |||||| ||||||||| |||||||    
T  1513992 atgggtttaagggtcctcttacttataaggtgttcaacctttactcttttatccgatgtgggatatataactcatacttgtacacaat 1514079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 500 - 578
Target Start/End: Original strand, 6876947 - 6877026
Alignment:
Q  500 atgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagac-atataagtcatacttgcacacaa 578  Q
    ||||||| ||||||||||||    |||||| ||||||||| ||||||||||| ||| |||||| ||| ||||||||||||    
T  6876947 atgggtcatcttatttataaggtgttcaacctttacttttttatccgatgtgggactatataactcacacttgcacacaa 6877026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 407 - 454
Target Start/End: Complemental strand, 32305646 - 32305599
Alignment:
Q  407 aggggagttcgggggatcgtccacatcgaggttagaacaactgcataa 454  Q
    ||||||||  |||||| |||||||||| ||||||||||||||||||||    
T  32305646 aggggagtcagggggaccgtccacatcaaggttagaacaactgcataa 32305599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 411 - 561
Target Start/End: Original strand, 43398062 - 43398217
Alignment:
Q  411 gagttcgggggatcgtccacatcgaggttagaacaactgca-taatatattcaac--cacattcttaatcaaaattttaaggcgatgggttgatgggtcc 507  Q
    ||||||||||||||| |||||||||||||||| |||| ||| || || |   |||  ||||||||||  ||||| |||||||| |||  || ||||||||    
T  43398062 gagttcgggggatcg-ccacatcgaggttagagcaaccgcactagtaaaagaaacgccacattcttatccaaaactttaaggcaatgaatttatgggtcc 43398160  T
Q  508 tc---ttatttataataaattcaacatttacttttctatccgatgtgagacatataa 561  Q
    ||   ||||||||||    |||||| |||||||||||||||||| ||||| ||||||    
T  43398161 tcctcttatttataaggtgttcaacctttacttttctatccgatatgagatatataa 43398217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 487 - 578
Target Start/End: Complemental strand, 9309065 - 9308972
Alignment:
Q  487 aggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtg--agacatataagtcatacttgcacacaa 578  Q
    |||| ||||||| ||||||||||||| |||||| |  |||||| |||||| || |||| ||||||   ||||||||| ||| ||||||||||||    
T  9309065 aggcaatgggtttatgggtcctcttacttataacatgttcaacttttactcttttatctgatgtgtaggacatataactcacacttgcacacaa 9308972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 540 - 578
Target Start/End: Original strand, 18645712 - 18645750
Alignment:
Q  540 ctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  18645712 ctatccgatgtgagacatataactcacacttgcacacaa 18645750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 463 - 561
Target Start/End: Complemental strand, 34835319 - 34835221
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataa 561  Q
    |||||| |||||  ||||| |||||||| ||| ||| ||||||||||||| ||||||    |||||| |||||| || |||| |||||| |||||||||    
T  34835319 accacactcttacccaaaactttaaggcaatgagtttatgggtcctcttacttataaggtgttcaacctttactattttatcggatgtgggacatataa 34835221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 463 - 560
Target Start/End: Original strand, 20870621 - 20870718
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatata 560  Q
    |||||| |||||  |||||| |||||||  |||||| ||||||||||||| |||||| |  |||||| |||||| || |||| ||||||  |||||||    
T  20870621 accacactcttatccaaaatcttaaggcagtgggtttatgggtcctcttacttataagatgttcaacctttactattttatctgatgtggaacatata 20870718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 484 - 578
Target Start/End: Complemental strand, 5866 - 5772
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||||||| ||||||||||||| ||||||    |||||| |||||| || ||||||||||| ||||||||| ||| ||||||||||||    
T  5866 ttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttactattttatccgatgtgcgacatataactcacacttgcacacaa 5772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 395 - 447
Target Start/End: Complemental strand, 15773375 - 15773323
Alignment:
Q  395 tgttggatcataaggggagttcgggggatcgtccacatcgaggttagaacaac 447  Q
    ||||||||||| ||||||||| || ||||||||||||||||||||||||||||    
T  15773375 tgttggatcatgaggggagttaggaggatcgtccacatcgaggttagaacaac 15773323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 463 - 578
Target Start/End: Original strand, 12114610 - 12114725
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||| | ||||||| ||||||||||||| ||||||    |||||| ||||||||||||||||||||| || ||||||     
T  12114610 accacactcttacccaaaaccttaagacaatgggtttatgggtcctcttacttataaggtgttcaacctttacttttctatccgatgtgggatatataac 12114709  T
Q  563 tcatacttgcacacaa 578  Q
    | | ||||||||||||    
T  12114710 ttacacttgcacacaa 12114725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 463 - 578
Target Start/End: Complemental strand, 39914362 - 39914247
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||| |||||||  | |||| ||||||||||||||||||||    |||||| | |||| || |||| ||||||||||||||||     
T  39914362 accacactcttatccaaaatattaaggcattaggtttatgggtcctcttatttataaggtgttcaacctctactgttttatctgatgtgagacatataac 39914263  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||||||||||    
T  39914262 tcacacttgcacacaa 39914247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 483 - 578
Target Start/End: Original strand, 49336755 - 49336850
Alignment:
Q  483 tttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||||| | ||||||| ||||||||||||| ||||||     ||||| ||||||||||||||||||||||||||| ||| ||| ||||| ||||||    
T  49336755 tttaagactatgggtttatgggtcctcttacttataaggtggtcaacctttacttttctatccgatgtgagacatgtaactcacacttgtacacaa 49336850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 500 - 573
Target Start/End: Complemental strand, 37726577 - 37726504
Alignment:
Q  500 atgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgca 573  Q
    |||| |||||||| ||||||   |||||||||||||| || ||||||||||||||||||||| ||| |||||||    
T  37726577 atggatcctcttacttataaggtattcaacatttactattttatccgatgtgagacatataactcacacttgca 37726504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 463 - 578
Target Start/End: Original strand, 32462948 - 32463064
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacattt-acttttctatccgatgtgagacatataa 561  Q
    |||||| ||||| ||||||  ||||||| ||||||| ||| ||| ||||| ||||||   ||||||| ||| ||| |||||||||||||| |||||||||    
T  32462948 accacactcttactcaaaaccttaaggcaatgggtttatgagtcttcttacttataaggtattcaaccttttactcttctatccgatgtgggacatataa 32463047  T
Q  562 gtcatacttgcacacaa 578  Q
     ||| ||||| ||||||    
T  32463048 ctcacacttgtacacaa 32463064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 463 - 578
Target Start/End: Complemental strand, 9240259 - 9240144
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    ||||||||||||  | |||| ||||||  |||| || ||||||||||||| ||||||    |||| | ||||||| |||||||||||||  ||||||||     
T  9240259 accacattcttatccgaaatcttaaggtaatggatttatgggtcctcttacttataaggtgttcagcttttacttctctatccgatgtggaacatataac 9240160  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||||||||||    
T  9240159 tcacacttgcacacaa 9240144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 484 - 575
Target Start/End: Original strand, 21832412 - 21832503
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcaca 575  Q
    ||||||| ||| ||| ||| ||||||||| ||||||    |||||| ||||||||||||||| ||||| ||||||||| ||| |||||||||    
T  21832412 ttaaggctatgagtttatgagtcctcttacttataaggtgttcaacctttacttttctatccaatgtgggacatataactcacacttgcaca 21832503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 463 - 578
Target Start/End: Original strand, 37991025 - 37991140
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||||||| ||| || |||||||||| ||||||    |||||| |||||| || ||||| |||||||||||||||     
T  37991025 accacactcttacccaaaaccttaaggcgatgagtttataggtcctcttacttataaggtgttcaacctttactattttatccaatgtgagacatataac 37991124  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||| ||||||    
T  37991125 tcacacttgtacacaa 37991140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 464 - 551
Target Start/End: Original strand, 41359814 - 41359901
Alignment:
Q  464 ccacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtg 551  Q
    |||||||||||  |||||  ||||||| ||||||| ||||||||||||| ||||||   ||||||| |||||| || |||||||||||    
T  41359814 ccacattcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataaggtattcaacctttactattgtatccgatgtg 41359901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 492 - 577
Target Start/End: Original strand, 1634391 - 1634477
Alignment:
Q  492 atgggttgatgggtcctcttatttataataaattcaacattt-acttttctatccgatgtgagacatataagtcatacttgcacaca 577  Q
    ||||||| ||||||||||||| |||||||   || ||| ||| | |||||||||||||||| ||||||||| ||| |||||||||||    
T  1634391 atgggtttatgggtcctcttacttataatgtgtttaaccttttatttttctatccgatgtgggacatataactcacacttgcacaca 1634477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 500 - 578
Target Start/End: Complemental strand, 8327977 - 8327899
Alignment:
Q  500 atgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||||| |||||| |||||| | ||||| | |||||| || ||||||||||| ||||||||| ||| ||||||||||||    
T  8327977 atgggttctcttacttataagatattcatcctttactcttttatccgatgtgggacatataactcacacttgcacacaa 8327899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 463 - 573
Target Start/End: Complemental strand, 22304679 - 22304569
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||| ||| ||| ||||||||||||| ||||||   ||||||| |||||| || ||||||||||| ||||||||      
T  22304679 accacactcttacccaaaaccttaaggcaatgtgtttatgggtcctcttacttataaggtattcaacctttactattttatccgatgtgggacatatagc 22304580  T
Q  563 tcatacttgca 573  Q
    ||| |||||||    
T  22304579 tcacacttgca 22304569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 500 - 578
Target Start/End: Original strand, 25739510 - 25739588
Alignment:
Q  500 atgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||||||||| |||||  |  |||||| |||||| || ||||||||||| ||||||||| ||| ||||||||||||    
T  25739510 atgggtcctcttacttatatgatgttcaacttttactattttatccgatgtgggacatataactcacacttgcacacaa 25739588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 524 - 578
Target Start/End: Original strand, 33175773 - 33175827
Alignment:
Q  524 ttcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||||| |||||||||||||| |||||||||||||||| ||| ||||| ||||||    
T  33175773 ttcaacctttacttttctatctgatgtgagacatataactcacacttgtacacaa 33175827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 484 - 578
Target Start/End: Complemental strand, 35946611 - 35946517
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| | ||||| ||||||||||||| ||||||    |||||| |||||| || ||||||||||| ||||||||| ||| ||||| ||||||    
T  35946611 ttaaggcaacgggtttatgggtcctcttacttataaggtgttcaacctttactgttttatccgatgtgggacatataactcacacttgtacacaa 35946517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 492 - 577
Target Start/End: Original strand, 7767391 - 7767476
Alignment:
Q  492 atgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacaca 577  Q
    ||||||| ||| ||||||||| ||||||    | |||| ||||||||||||||||||||| ||||||||| ||| |||| ||||||    
T  7767391 atgggtttatgagtcctcttagttataaagtgtccaacctttacttttctatccgatgtgggacatataactcagacttacacaca 7767476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 463 - 576
Target Start/End: Complemental strand, 15772964 - 15772851
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  |||| || ||| ||| ||||||||||||| ||||||    ||||||||||||| || |||||||| || |||||||||     
T  15772964 accacactcttatccaaaaccttaaagcaatgagtttatgggtcctcttacttataaggtgttcaacatttactcttttatccgatatgggacatataac 15772865  T
Q  563 tcatacttgcacac 576  Q
    ||| ||||||||||    
T  15772864 tcacacttgcacac 15772851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 477 - 578
Target Start/End: Complemental strand, 15773288 - 15773187
Alignment:
Q  477 caaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacac 576  Q
    ||||| |||||||| ||| | | ||| ||||||||| |||||| |  |||||| |||||| || ||| ||||||| ||||||||| ||| ||||||||||    
T  15773288 caaaactttaaggcaatgagcttatgagtcctcttacttataagatgttcaacttttactcttttattcgatgtgggacatataactcacacttgcacac 15773189  T
Q  577 aa 578  Q
    ||    
T  15773188 aa 15773187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 537 - 582
Target Start/End: Original strand, 39336351 - 39336396
Alignment:
Q  537 tttctatccgatgtgagacatataagtcatacttgcacacaatagt 582  Q
    ||||||||||||||| ||||||||| ||| ||||||||||||||||    
T  39336351 tttctatccgatgtgggacatataactcacacttgcacacaatagt 39336396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 534 - 578
Target Start/End: Original strand, 12747871 - 12747915
Alignment:
Q  534 acttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||||||||||||||||| ||||||||| ||| ||||||||||||    
T  12747871 acttttctatccgatgtgggacatataactcacacttgcacacaa 12747915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 408 - 448
Target Start/End: Complemental strand, 37726664 - 37726624
Alignment:
Q  408 ggggagttcgggggatcgtccacatcgaggttagaacaact 448  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  37726664 ggggagttcgggggaccgtccacatcgaggctagaacaact 37726624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 463 - 578
Target Start/End: Original strand, 37990687 - 37990802
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||| ||| ||| ||| ||||||||| ||||||    ||||||||||||| || |||||||||||  ||||||||     
T  37990687 accacactcttacccaaaaccttaaggcaatgagtttatgagtcctcttacttataaggtgttcaacatttactattttatccgatgtggaacatataac 37990786  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||| ||||||    
T  37990787 tcacacttgtacacaa 37990802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 463 - 578
Target Start/End: Original strand, 54017864 - 54017979
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  |||||||| | |||| ||| ||||||||| ||||||    |||||| |||||| || ||||||||||  |||||||||     
T  54017864 accacactcttacccaaaaccttaaggcgttaggtttatgagtcctcttacttataaggtgttcaacctttactcttttatccgatgtaggacatataac 54017963  T
Q  563 tcatacttgcacacaa 578  Q
    ||| ||||||||||||    
T  54017964 tcacacttgcacacaa 54017979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 463 - 573
Target Start/End: Complemental strand, 4823765 - 4823655
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||| ||||||| ||| ||| |||||||||| || ||||||    || ||| |||||| || ||||||||||||||| |||||     
T  4823765 accacactcttacccaaaatcttaaggcaatgagtttatgggtcctcctacttataaggtgtttaacttttactattttatccgatgtgagacttataac 4823666  T
Q  563 tcatacttgca 573  Q
    ||| |||||||    
T  4823665 tcacacttgca 4823655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 504 - 578
Target Start/End: Complemental strand, 25755463 - 25755389
Alignment:
Q  504 gtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||||| ||||||   ||||||| |||||| || |||| |||||||||||||||| ||| ||||| ||||||    
T  25755463 gtcctcttacttataaggtattcaacctttactcttttatctgatgtgagacatataactcacacttgtacacaa 25755389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 492 - 578
Target Start/End: Original strand, 29644658 - 29644744
Alignment:
Q  492 atgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| |||||| |||||| ||||||    |||||| |||||| ||  |||||||||| ||||||||| ||| ||||||||||||    
T  29644658 atgggtttatgggttctcttacttataaggtgttcaacctttactctttaatccgatgtgggacatataactcacacttgcacacaa 29644744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 492 - 578
Target Start/End: Original strand, 29644979 - 29645065
Alignment:
Q  492 atgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||||||||||||| ||||||    || ||| |||||| || ||||||||||| ||||||||| | | ||||||||||||    
T  29644979 atgggtttatgggtcctcttacttataaggtgtttaacctttactcttttatccgatgtgggacatataacttacacttgcacacaa 29645065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 492 - 578
Target Start/End: Original strand, 33803329 - 33803415
Alignment:
Q  492 atgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||||||||||||| |||||     |||||| |||||| || ||||||||||| ||||||||| ||| | ||||||||||    
T  33803329 atgggtttatgggtcctcttacttatatggtgttcaacctttactattttatccgatgtgggacatataactcacaattgcacacaa 33803415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 484 - 578
Target Start/End: Original strand, 42342159 - 42342253
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||| ||| ||| ||||||||| ||||||   ||| |||||||||| || |||||||||||  |||||| | ||| ||||||||||||    
T  42342159 ttaaggcaatgagtttatgagtcctcttacttataaggcattgaacatttactcttttatccgatgtggaacatatgaatcacacttgcacacaa 42342253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 484 - 578
Target Start/End: Complemental strand, 52634764 - 52634671
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||||||| ||||||| ||||| ||||||    |||||| |||||| || ||||||||||| ||||||||| ||| ||||| ||||||    
T  52634764 ttaaggcaatgggtttatgggtc-tcttacttataaggcgttcaacctttactgttttatccgatgtgggacatataactcacacttgtacacaa 52634671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 524 - 578
Target Start/End: Complemental strand, 53577413 - 53577359
Alignment:
Q  524 ttcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    |||||| |||||| || ||||||||||| ||||||||| ||| ||||||||||||    
T  53577413 ttcaacctttactgttttatccgatgtgtgacatataactcacacttgcacacaa 53577359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 402 - 447
Target Start/End: Complemental strand, 25755568 - 25755523
Alignment:
Q  402 tcataaggggagttcgggggatcgtccacatcgaggttagaacaac 447  Q
    |||| |||||||||||||||| | |||||||||||| |||||||||    
T  25755568 tcatgaggggagttcgggggaccatccacatcgaggctagaacaac 25755523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 500 - 573
Target Start/End: Complemental strand, 51886634 - 51886561
Alignment:
Q  500 atgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgca 573  Q
    ||||||||||||| |||||  |  |||||| |||||| || ||| ||||||||||||||||| ||| |||||||    
T  51886634 atgggtcctcttacttatatgatgttcaacctttactattttattcgatgtgagacatataactcacacttgca 51886561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 484 - 578
Target Start/End: Original strand, 17525 - 17619
Alignment:
Q  484 ttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataagtcatacttgcacacaa 578  Q
    ||||||| ||||||| ||||||||||||| ||| ||    |||||| |||||| || |||| |||||| ||||||||| ||| ||||||||||||    
T  17525 ttaaggctatgggtttatgggtcctcttacttacaaggtgttcaacctttactattttatctgatgtgtgacatataactcacacttgcacacaa 17619  T

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Target: scaffold0702 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 463 - 571
Target Start/End: Original strand, 562 - 670
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||| |||||  |||||  ||||||| ||||||| ||||||||||||| ||||||    |||||| |||||| || || |||||||| |||||||||     
T  562 accacactcttacccaaaaccttaaggcaatgggtttatgggtcctcttacttataaggtgttcaacctttactcttttaaccgatgtgggacatataac 661  T
Q  563 tcatacttg 571  Q
    ||| |||||    
T  662 tcacacttg 670  T

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Target: scaffold0027 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 463 - 577
Target Start/End: Complemental strand, 47470 - 47356
Alignment:
Q  463 accacattcttaatcaaaattttaaggcgatgggttgatgggtcctcttatttataataaattcaacatttacttttctatccgatgtgagacatataag 562  Q
    |||||||| |||  ||||| |||||||| ||||||| |||| | |||||| ||||||    |||||  |||||| || |||| |||||||||||| |||     
T  47470 accacatttttacccaaaactttaaggcaatgggtttatggattctcttacttataaggtgttcaaactttactattttatcggatgtgagacatttaat 47371  T
Q  563 tcatacttgcacaca 577  Q
    ||| |||||||||||    
T  47370 tcacacttgcacaca 47356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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