View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17675_low_11 (Length: 253)
Name: NF17675_low_11
Description: NF17675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17675_low_11 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 14608799 - 14608562
Alignment:
| Q |
16 |
aatatttccagcacaaattgaacatttagatcctttagcccctgccatttgaggatgagtcacctcagaatcaatcactctatccattagatgagctctc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14608799 |
aatatttccagcacaaattgaacatttagatcctttagcccctgccatttgaggatgagtcacctcagaatcaatcactctatccattagatgagctctt |
14608700 |
T |
|
| Q |
116 |
gttacactattgaatcctccggtaaacaaagaattggaaacatattgttcttcagctttcattgcaacagaattaccatccattggttggttatcaggag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14608699 |
gttacactattgaatcctccggtaaacaaagaattggaaacatattgttcttcagctttcattgcaacagaattaccatccattggttggttatcaggag |
14608600 |
T |
|
| Q |
216 |
tgggaggaatatgaacggtataattcatataatctcct |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14608599 |
tgggaggaatatgaacggtataattcatataatctcct |
14608562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 27 - 249
Target Start/End: Original strand, 14599667 - 14599889
Alignment:
| Q |
27 |
cacaaattgaacatttagatcctttagcccctgccatttgaggatgagtcacctcagaatcaatcactctatccattagatgagctctcgttacactatt |
126 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||| || | ||||||||||||||||| ||||||||||| |
|
|
| T |
14599667 |
cacaaattgaacaagaagatcctttagcccctgccatttgaggatgagttacttcagaatcaataaccttgtccattagatgagctcttgttacactatt |
14599766 |
T |
|
| Q |
127 |
gaatcctccggtaaacaaagaattggaaacatattgttcttcagctttcattgcaacagaattaccatccattggttggttatcaggagtgggaggaata |
226 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14599767 |
gaatcctccggtaaataaagaattggaaacatattgttcttcagctttcattgcaacagaagtaccatccattggttggttatcaggagtgggaggaata |
14599866 |
T |
|
| Q |
227 |
tgaacggtataattcatataatc |
249 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
14599867 |
tgaacagtataattcatataatc |
14599889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University