View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17675_low_14 (Length: 237)
Name: NF17675_low_14
Description: NF17675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17675_low_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 14608140 - 14608359
Alignment:
| Q |
18 |
ttgttcttattcttcatggaatgtaagaaaatgatgggttttcaaattggatttggatagggtctaactgattccacaatggtaatttaagaaatctata |
117 |
Q |
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| T |
14608140 |
ttgttcttattcttcatggaatgtaagaaaatgatgggttttcaaattggatttggatagggtctaactgattccacaatggtaatttaagaaatctata |
14608239 |
T |
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| Q |
118 |
taaatcatatttcttccacatgcataacatttgattcatgcttgtagattttcttttttgataagccaaaggtatccccagctctaagctagaaactaat |
217 |
Q |
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| T |
14608240 |
taaatcatatttcttccacatgcataacatttgattcatgcttgtagattttcttttttgataagccaaaggtatccccagctctaagctagaaactaat |
14608339 |
T |
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| Q |
218 |
tcttcgaagtacgaatatcc |
237 |
Q |
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| T |
14608340 |
tcttcgaagtacgaatatcc |
14608359 |
T |
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