View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17675_low_2 (Length: 526)

Name: NF17675_low_2
Description: NF17675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17675_low_2
NF17675_low_2
[»] chr4 (2 HSPs)
chr4 (1-526)||(13974864-13975389)
chr4 (31-158)||(13985461-13985588)


Alignment Details
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Complemental strand, 13975389 - 13974864
Alignment:
Q  1 ggctgaacattggaatttgtggattcgtccttttcttggttgtaatcaggaagaggaatcctgaatgaattggcaagtaatgattgggcacccatgaatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13975389 ggctgaacattggaatttgtggattcgtccttttcttggttgtaatcaggaagaggaatcctgaatgaattggcaagtaatgattgggcacccatgaatg 13975290  T
Q  101 tggaaatcttctgttgctttccggcgaggaggttctcacaatggagagccatttctttatatggcatgttagaaggtgttgaaacagaaatccttcctac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13975289 tggaaatcttctgttgctttccggcgaggaggttctcacaatggagagccatttctttatatggcatgttagaaggtgttgaaacagaaatccttcctac 13975190  T
Q  201 atgatgtgttgtctccacaacctgcatatgaattatcgttttacaactcattattttttagaattaatagtataattcgacgaggaaattgaagagagaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13975189 atgatgtgttgtctccacaacctgcatatgaattatcgttttacaactcattattttttagaattaatagtataattcgacgaggaaattgaagagagaa 13975090  T
Q  301 atggatgagtgttaagagaatgnnnnnnnnnnnnnctctatagcttaattaaaatcgaatatgttatcggtgtgtacatatcaatgaacagaaaaactta 400  Q
    ||||||||||||||||||||||             ||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  13975089 atggatgagtgttaagagaatgttttttcatttttctcaatagcttaattaaaatcgaatatgttatcgttgtgtacatttcaatgaacagaaaaactta 13974990  T
Q  401 ctgaacccaaaatatcatcaacagttatcaggctaagattttctaaaggctgttgttgcgcatcagtactagtttggctttccaaaccagaagctggaat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13974989 ctgaacccaaaatatcatcaacagttatcaggctaagattttctaaaggctgttgttgcgcatcagtactagtttggctttccaaaccagaagctggaat 13974890  T
Q  501 gtcatcatcaatagtaaataatggaa 526  Q
    ||||||||||||||||||||||||||    
T  13974889 gtcatcatcaatagtaaataatggaa 13974864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 31 - 158
Target Start/End: Complemental strand, 13985588 - 13985461
Alignment:
Q  31 ttttcttggttgtaatcaggaagaggaatcctgaatgaattggcaagtaatgattgggcacccatgaatgtggaaatcttctgttgctttccggcgagga 130  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||| ||||||||||||||||||| |||||    
T  13985588 ttttcttggttgtaatctggaagaggaatcctgaatgaattggtaagtaatgaatgggcacccatgaaagtggatatcttctgttgctttccggtgagga 13985489  T
Q  131 ggttctcacaatggagagccatttcttt 158  Q
    |||||||||||||||||| |||||||||    
T  13985488 ggttctcacaatggagagtcatttcttt 13985461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University