View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17675_low_3 (Length: 496)
Name: NF17675_low_3
Description: NF17675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17675_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 401
Target Start/End: Original strand, 27078183 - 27078565
Alignment:
| Q |
19 |
tagtagacgacaaacaaatcacaattataaagaaaaatatgagtacctatctggtgccaaattcacaaaaggtcttccttgaaaaaattggtccnnnnnn |
118 |
Q |
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| T |
27078183 |
tagtagacgacaaacaaatcacaattataaggaaaaatatgagtacctatctggtgccaaattcacaaaaggtcttccctgaaaaaattggtcttttttt |
27078282 |
T |
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| Q |
119 |
nnnngcctgaagaaaagagtgacataattaatccattgccaacctccattcgtccacgttttatttcaaccatggaggaatgaaaaatatacacatattt |
218 |
Q |
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| T |
27078283 |
ttttgcctgaagaaaagagtgacataattaatccattgccaacctccattcgtcggcgttttatttcaaccatggaggaatgaaaaatatacacatattt |
27078382 |
T |
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| Q |
219 |
ttgctgtgacaactagcgcgaaaagaaaatggtatcataaaatgagtttgttaagtttataaaggtagttccgaatgacaaaaaatatcaaaaacgcaca |
318 |
Q |
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| T |
27078383 |
ttgctgtgtcaactagcgcgaaaagaaaatggtatcataaaatgagtttgttaagtttataaaggtagttccgaatgacaaaaaatatcaaaaa-gcgca |
27078481 |
T |
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| Q |
319 |
tttaattctgtcata-ttttttattcaatcattgaaatatacataacataggtctagatcaatagcatgaaaaccatccatcca |
401 |
Q |
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| T |
27078482 |
tttaattctgtcatatttttttattcaatcattgaaatatacataacataggtctagatcaatagcatgaaaaccatccatcca |
27078565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 401
Target Start/End: Original strand, 27166247 - 27166630
Alignment:
| Q |
19 |
tagtagacgacaaacaaatcacaattataaagaaaaatatgagtacctatctggtgccaaattcacaaaaggtcttccttgaaaaaattggtccnnnnnn |
118 |
Q |
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| T |
27166247 |
tagtagacgacaaacaaatcacaattataaggaaaaatatgagtacctatctggtgccaaattcacaaaaggtcttccctgaaaaaattggtcttttttt |
27166346 |
T |
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| Q |
119 |
nnnng-cctgaagaaaagagtgacataattaatccattgccaacctccattcgtccacgttttatttcaaccatggaggaatgaaaaatatacacatatt |
217 |
Q |
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| T |
27166347 |
ttttgtcctgaagaaaagagtgacataattaatccattgccaacctccattcgtcggcgttttatttcaaccatggaggaatgaaaaatatacacatatt |
27166446 |
T |
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| Q |
218 |
tttgctgtgacaactagcgcgaaaagaaaatggtatcataaaatgagtttgttaagtttataaaggtagttccgaatgacaaaaaatatcaaaaacgcac |
317 |
Q |
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| T |
27166447 |
tttgctgtgtcaactagcgcgaaaagaaaatggtatcataaaatgagtttgttaagtttataaaggtagttccgaatgacaaaaaatatcaaaaa-gcgc |
27166545 |
T |
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| Q |
318 |
atttaattctgtcata-ttttttattcaatcattgaaatatacataacataggtctagatcaatagcatgaaaaccatccatcca |
401 |
Q |
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| T |
27166546 |
atttaattctgtcatatttttttattcaatcattgaaatatacataacataggtctagatcaatagcatgaaaaccatccatcca |
27166630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 27 - 243
Target Start/End: Original strand, 1284153 - 1284364
Alignment:
| Q |
27 |
gacaaacaaatcacaattataaagaaaaatatgagtacctatctggtgccaaattcacaaaaggtcttccttgaaaaaattggtccnnnnnnnnnngcct |
126 |
Q |
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| T |
1284153 |
gacaaacaaatcacaattataaggaaaaagatgagtacctatctggtaccaaattcacaaaaggtcttccctgaaaaaactgctcc--ttttttttgtct |
1284250 |
T |
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| Q |
127 |
gaagaaaagagtgacataattaatccattgccaacctccattcgtccacgttttatttcaaccatggaggaatgaaaaatatacacatatttttgctgtg |
226 |
Q |
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| T |
1284251 |
gaag---agggtgacatagttgatccattgcaaacctccgttcgtcggcgttttatttcaactatggctgaatgaaaattatacacatatttttgttgtg |
1284347 |
T |
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| Q |
227 |
acaactagcgcgaaaag |
243 |
Q |
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| T |
1284348 |
tcaactagcgcgaaaag |
1284364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 334 - 379
Target Start/End: Complemental strand, 27076320 - 27076275
Alignment:
| Q |
334 |
ttttttattcaatcattgaaatatacataacataggtctagatcaa |
379 |
Q |
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| T |
27076320 |
ttttttattcaatcattgaaatatacataacataggtctagatcaa |
27076275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 123 - 205
Target Start/End: Complemental strand, 27076439 - 27076358
Alignment:
| Q |
123 |
gcctgaagaaaagagtgacataattaatccattgccaacctccattcgtccacgttttatttcaaccatggaggaatgaaaaa |
205 |
Q |
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| T |
27076439 |
gcctgaagaagagagtgacataattgattcattgccaacctccatttgtcggcgttttattt-taccatggctgaatgaaaaa |
27076358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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