View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17675_low_4 (Length: 430)
Name: NF17675_low_4
Description: NF17675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17675_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 186 - 412
Target Start/End: Complemental strand, 16156848 - 16156627
Alignment:
| Q |
186 |
caattcttttgtggtcaaaataaaaatattaattttatcaataatggacaaaaacctataaagggacttggaccaattttaacgcaatccaactcactta |
285 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||||||| ||||| |||||| |||||||||||||| || ||||||||||| ||||| |
|
|
| T |
16156848 |
caattcttttgtggtcaaaatagaaatattaatttgatcaataatggaaaaaaatctataa-gggacttggaccaa----aatgcaatccaactaactta |
16156754 |
T |
|
| Q |
286 |
tttggactttgcatgtttctgcaagattggcaaggtagcttgttttacaaataatgggattgtttgatcaatttgattaaagaaattcatttaataaata |
385 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||| |
|
|
| T |
16156753 |
tttggactttgcatgtttctgcaatattagcaaggtagcttgttttacaaataatgggattgtttgatcaatttgattaaataaattcatttaaaagata |
16156654 |
T |
|
| Q |
386 |
atatttcaaatgccagactaaaaatag |
412 |
Q |
| |
|
|||||||||||| |||||||||||||| |
|
|
| T |
16156653 |
atatttcaaatgtcagactaaaaatag |
16156627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 16157444 - 16157392
Alignment:
| Q |
57 |
ttgtgcatataaattatttctttacttttacactattccctattcaatgcaat |
109 |
Q |
| |
|
||||||||||||||||| ||||||| |||| ||| ||||||| ||||| |||| |
|
|
| T |
16157444 |
ttgtgcatataaattatctctttacatttatactgttccctaatcaattcaat |
16157392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University