View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17675_low_5 (Length: 415)
Name: NF17675_low_5
Description: NF17675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17675_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 26563247 - 26562943
Alignment:
| Q |
18 |
atcatgtagctagatatctaactaggagattaggtgagtgacttcaaatnnnnnnnnnnnnnnnnnagcaccattgtttgtgggtgtaagattgagtatt |
117 |
Q |
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| T |
26563247 |
atcatgtagctagatttctaactaggagattaggtgagtgacttcaaatagagagaga--------agcaccattgtttgtgggtgtaagattgagtatt |
26563156 |
T |
|
| Q |
118 |
ttagtggctgcctccaaaacccatgattctggggattgatagagagatgaggaagcactgcagcaagacgcaagcatgtcagtgttgatgactcctgtat |
217 |
Q |
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| T |
26563155 |
ttggtggcttcctccaaaacccatgattctggggattgatagagagatgaggaagcaccgtagcaagacgcaagtatgttagtgctgatgactcctgtat |
26563056 |
T |
|
| Q |
218 |
tgagtgccaccactgccattcctttaggaaactcttcagcaacagacttggtgagtccttcaatttcccatttggatgcaaagtaaggtgctacgagggc |
317 |
Q |
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| T |
26563055 |
tgagtgccatcactgccattcctttaggaaactcttcagcaacagacttggtgagtccttcaatttcccatttggatgcaaagtaaggtgctacgagtgc |
26562956 |
T |
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| Q |
318 |
agcacctgatctt |
330 |
Q |
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||||||||||||| |
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| T |
26562955 |
agcacctgatctt |
26562943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 397
Target Start/End: Original strand, 26560327 - 26560711
Alignment:
| Q |
5 |
aagttgataatcaatcatgtagctagatatctaactaggagattaggtgagtgacttcaaatnnnnnnnnnnnnnnnnnagcaccattgtttgtgggtgt |
104 |
Q |
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| T |
26560327 |
aagtcgataatcaatcatgtaagtagatatctagctaggagattaggtgagtgacttcaaatagagagaga--------agaaccattatctgttggtgt |
26560418 |
T |
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| Q |
105 |
aagattgagtattttagtggctgcctccaaaacccatgattctggggattgatagagagatgaggaagcactgcagcaagacgcaagcatgtcagtgttg |
204 |
Q |
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| T |
26560419 |
aagattgagtatcttggtggctgcctccaaaacccatgattctgggaatcgataaagagatgaggaagcaccatagcaaaaagcaagcatgttagtgttg |
26560518 |
T |
|
| Q |
205 |
atgactcctgtattgagtgccaccactgccattcctttaggaaactcttcagcaacagacttggtgagtccttcaatttcccatttggatgcaaagtaag |
304 |
Q |
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||||| |||| |||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| |||||||||||| ||||||||||| || |||||| |
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| T |
26560519 |
atgacccctggattgagtgccaccactgccattactttaggcaactcttcaacaacagacttggtaagtccttcaattgcccatttggatacacagtaag |
26560618 |
T |
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| Q |
305 |
gtgctacgagggcagcacctgatcttccccaacctgaagacatattcactattatccctccctcttcattcttgttctttttaaccatcaaag |
397 |
Q |
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| T |
26560619 |
gtgctacaagtgcagcaactgatcttccccaacctgaagacatgttcactattatccctccctcttcatactttttatttttaaccatcaaag |
26560711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 84 - 383
Target Start/End: Original strand, 24889857 - 24890156
Alignment:
| Q |
84 |
agcaccattgtttgtgggtgtaagattgagtattttagtggctgcctccaaaacccatgattctggggattgatagagagatgaggaagcactgcagcaa |
183 |
Q |
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||||||||||| || ||||||||||||||||| || ||||||||||| || |||||||||||||||||||||| || ||||||||||||| |||| |
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| T |
24889857 |
agcaccattgtctgcaggtgtaagattgagtatcttggtggctgcctctgaagcccatgattctggggattgataaagcgatgaggaagcaccatagcat |
24889956 |
T |
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| Q |
184 |
gacgcaagcatgtcagtgttgatgactcctgtattgagtgccaccactgccattcctttaggaaactcttcagcaacagacttggtgagtccttcaattt |
283 |
Q |
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| T |
24889957 |
gaagcaagcatgtcagtgttgatgactcctggattcagtgccactactgccattcctttaggcaactcttcagcaacagacttagtgagtccttcaattg |
24890056 |
T |
|
| Q |
284 |
cccatttggatgcaaagtaaggtgctacgagggcagcacctgatcttccccaacctgaagacatattcactattatccctccctcttcattcttgttctt |
383 |
Q |
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| T |
24890057 |
cccatttggatgcacaataaggtgctacaagtgctgcacctgatcttccccaaccagaagacatgttcactattatccctcccatttcattcttgttctt |
24890156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 138 - 346
Target Start/End: Complemental strand, 56437152 - 56436944
Alignment:
| Q |
138 |
ccatgattctggggattgatagagagatgaggaagcactgcagcaagacgcaagcatgtcagtgttgatgactcctgtattgagtgccaccactgccatt |
237 |
Q |
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| T |
56437152 |
ccatgattcaggggattgataaagagaagcggaagcaccaaagcaagaagcaagcatgtcagtgttgatgacaccaggattgagtgcgacaacagccatt |
56437053 |
T |
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| Q |
238 |
cctttaggaaactcttcagcaacagacttggtgagtccttcaatttcccatttggatgcaaagtaaggtgctacgagggcagcacctgatcttccccaac |
337 |
Q |
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|||| || ||||||| ||| |||||||| |||||||||||||| |||||||||||||| ||||||| || || || || ||||| ||||||||||||| |
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| T |
56437052 |
ccttgtggtaactctttagctacagactttgtgagtccttcaatagcccatttggatgcacagtaaggagcaacaagtgctgcacccgatcttccccaac |
56436953 |
T |
|
| Q |
338 |
ctgaagaca |
346 |
Q |
| |
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| T |
56436952 |
cagaagaca |
56436944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 26562944 - 26562903
Alignment:
| Q |
356 |
ttatccctccctcttcattcttgttctttttaaccatcaaag |
397 |
Q |
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| T |
26562944 |
ttatccctccctcttcattcttgttctttttaaccatcaaag |
26562903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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