View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17676_high_10 (Length: 435)
Name: NF17676_high_10
Description: NF17676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17676_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 18586745 - 18586465
Alignment:
| Q |
18 |
aattagtgtatgtgttttttagtagcgctaatcacaggtgactgctggtggtggaaccacagttataacagctttgtcgcttagaaaaatgcataatagc |
117 |
Q |
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| T |
18586745 |
aattagtgtatgtgttttcgagtagcgctaatcacaggtgactgctggtggtggaaccacagttataacagctttgtcgcttagaaaaatgcataatagc |
18586646 |
T |
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| Q |
118 |
aggtaattgaaaatggtatgaatcggagtttaggatggcttcttctgatccctggagctcctagatcagaagatatccacctgtccgactagaattcaaa |
217 |
Q |
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| T |
18586645 |
aggtaattgaaaatggtatgaatcggagtttaggatggcttcttctgatccctggagctcctagatcagaagatatccacctgtccgactagaattcaaa |
18586546 |
T |
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| Q |
218 |
gtttagtttccataacttgttcacataatgacacagatgtatggcggaagttctactctctgtcctaatatgcaaacatcttgtgcgaaatgt |
310 |
Q |
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| T |
18586545 |
gtttagt------------ttcacataatgacagagatgtatggcggaagttctactctctgtcctaatatgcaagcatcttgtgtgaaatgt |
18586465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 331 - 430
Target Start/End: Complemental strand, 18586030 - 18585931
Alignment:
| Q |
331 |
tttgagaggacactaattatgttttcttttttaggcggtctccttgcatttctgtttttgttgtattctgttgtaaggaggtgtttacctctattctgtg |
430 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18586030 |
tttgagaggacactatttatgttttcttttttaggcggtctccttgcatttctgtttttgttgtattctgttgtaaggaggtgtttacctctattctgtg |
18585931 |
T |
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