View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17676_high_19 (Length: 361)
Name: NF17676_high_19
Description: NF17676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17676_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 40255632 - 40255292
Alignment:
| Q |
1 |
atctagcttcaaatcatcataaataatgaaaaactgcatacgtgactacaaaaagtatgccaagtttaccattgtttttcttcttcagtattcaattcaa |
100 |
Q |
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| T |
40255632 |
atctagcttcaaatcatcataaataatgaaaaactgcatacgtgactacaaaaagtatgccaagtttaccattgtttttcttcttcagtattcaattcaa |
40255533 |
T |
|
| Q |
101 |
atatttgatggataaaaaagaacaaaataataagggaatagatacacaatataaaaaggcaatgcaattgcaacctagagatgctaaatctacacataaa |
200 |
Q |
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| T |
40255532 |
atatttgatggataaaaaagaacaaaataataagggaatagatacacaatataaaaaggcaatgcaattgcaacctagagatgctaaatctacacataaa |
40255433 |
T |
|
| Q |
201 |
gttggctatatatcttcatctcacatttaattcaaatnnnnnnnnctttgagcagccttataaaaactttctcttttttcctgctattgtatgatttttg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
40255432 |
gttggctatatatcttcatctcacatttaattcaaataaaaaaaactttgagcagccttataaaaactttctcttttttcctgctattgtatgattttgg |
40255333 |
T |
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| Q |
301 |
atcccatttgattccatatacgacattggttcattcttcac |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
40255332 |
atcccatttgattccatatacgacattggttcattcttcac |
40255292 |
T |
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