View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17676_high_20 (Length: 344)
Name: NF17676_high_20
Description: NF17676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17676_high_20 |
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| [»] scaffold0903 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 13 - 310
Target Start/End: Original strand, 21718384 - 21718670
Alignment:
| Q |
13 |
aatatgtaaattgatgttgatgcaggaatgtaccttgtttggtggcttaaatggtgcatttgcttttggtgcaccattggcatttccttttggtgcaagt |
112 |
Q |
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| T |
21718384 |
aatatgtaaattgatgttgatgtaggaatgtactttgtttggtggcttaaatggtgcatttgcttttggtgcaccattgaca---acagttggtgcaagt |
21718480 |
T |
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| Q |
113 |
gcagtagcaggtgtaggtgcatttggtgcatcaggtatgacagttggtgcaagtgcagtagcaggttgagaccttttagcaggttgagacttctttggtt |
212 |
Q |
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| T |
21718481 |
gcagtagcaggtgcatttgcagttggtacacca---ttgaca------gcagtagcagatgcaggttgagaccttttagcaggttgagacttctttggtt |
21718571 |
T |
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| Q |
213 |
gagaccttttagcagtagcagaatcagttgcat-------tgtaggttgaacaacaactgagacttgaggttcaggtgcagacacatcagggacattacc |
305 |
Q |
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| T |
21718572 |
gagaccttttagcagtagcaggatcagttgcattaacttgtgtaggttgaacaacaactgagac------ttcaggtgcagacacatcagggacattacc |
21718665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 20655224 - 20655177
Alignment:
| Q |
26 |
atgttgatgcaggaatgtaccttgtttggtggcttaaatggtgcattt |
73 |
Q |
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| T |
20655224 |
atgttaatgcattaatgtaccttgtttggtggcttaaatggtgcattt |
20655177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0903 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0903
Description:
Target: scaffold0903; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 322
Target Start/End: Original strand, 1939 - 2241
Alignment:
| Q |
13 |
aatatgtaaattgatgttgatgcaggaatgtaccttgtttggtggcttaaatggtgcatttgcttttggtgcaccattggcatttccttttggtgcaagt |
112 |
Q |
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| T |
1939 |
aatatgtaaattgatgttgatgcaggaatgtaccttgtttggtggcttaaattgtgcatttgcttttggtgcaccattgaca---acagttggtgcaact |
2035 |
T |
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| Q |
113 |
gcagtagcaggtgtaggtgcatttggtgcatcaggtatgacagttggtgcaagtgcagtagcaggttgagaccttttagcaggttgagacttctttggtt |
212 |
Q |
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| T |
2036 |
gcagtagcaggtgcatttgcagttggtacacca---ttgaca------gcagtagcagatgcaggttgagaccttttagcaggttgagacttctttggtt |
2126 |
T |
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| Q |
213 |
gagaccttttagcagtagcaga---atca-gttgcat-------tgtaggttgaacaacaactgagacttgaggttcaggtgcagacacatcagggacat |
301 |
Q |
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| T |
2127 |
gagaccttttagcaatagcagacacatcaggttgcattaacttgtgtaggttgaacaacaactgagac------ttcgggtgcagacacatcagggacat |
2220 |
T |
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| Q |
302 |
taccagtaggttcaggtgcag |
322 |
Q |
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|||| |||||||||||||||| |
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| T |
2221 |
taccggtaggttcaggtgcag |
2241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0903; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 273 - 326
Target Start/End: Original strand, 2228 - 2281
Alignment:
| Q |
273 |
aggttcaggtgcagacacatcagggacattaccagtaggttcaggtgcaggcac |
326 |
Q |
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| T |
2228 |
aggttcaggtgcagacacatcattcacattaccagtaggttcaggtgcaggcac |
2281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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