View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17676_high_25 (Length: 304)
Name: NF17676_high_25
Description: NF17676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17676_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 12 - 289
Target Start/End: Complemental strand, 32320625 - 32320347
Alignment:
| Q |
12 |
aagaagacataacaaacttcattggttttagccaaccaaacaacaacatatccaacgaaaataatctcaaatttggcctaaacacaagcaaccaaatttg |
111 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32320625 |
aagaagacataacaaacttcattggttttagccagccaaacaagaacatatccaacgaaaatgatctcaaatttggcctaaacacaagcaaccaaatttg |
32320526 |
T |
|
| Q |
112 |
agactataaaatacagaaatgtaaacacaaagttcaagtaacaaaatccaacagtcttttaggtttttcataattc-ataaaacaatagcaaacctacct |
210 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
32320525 |
agactataaaatacataaatgtaaacacaaagttcaagtaacaaaatccaacagtcttttaagtttttcataattcaataaaacaatagcaaacctacct |
32320426 |
T |
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| Q |
211 |
agatcttaagatccaaatcgagctcttcaaagtcaccatattgtctacttgtactccctccatccttctcttttccttt |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32320425 |
agatcttaagatccaaatcgagctcttcaaagtcaccatattgtctacttgtactccctccatccttctcttttccttt |
32320347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 12 - 289
Target Start/End: Complemental strand, 32367520 - 32367242
Alignment:
| Q |
12 |
aagaagacataacaaacttcattggttttagccaaccaaacaacaacatatccaacgaaaataatctcaaatttggcctaaacacaagcaaccaaatttg |
111 |
Q |
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|
|||||||||||||||||||||| |||||||| ||||||| |||| |||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
32367520 |
aagaagacataacaaacttcatgatttttagccggtcaaacaagaacagatccaacgaaaataatctcaaatttggcttaaacacaagcagccaaatttg |
32367421 |
T |
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| Q |
112 |
agactataaaatacagaaatgtaaacacaaagttcaagtaacaaaatccaacagtcttttaggtttttcataattc-ataaaacaatagcaaacctacct |
210 |
Q |
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||||| ||||||| |||||||||||| ||||||||||||| || | ||| || |||||| |||||||||||||| ||||||| ||||||||||||||| |
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| T |
32367420 |
agactctaaaatagagaaatgtaaaccaaaagttcaagtaaataagtgcaaaagacttttaagtttttcataattcaataaaaccatagcaaacctacct |
32367321 |
T |
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| Q |
211 |
agatcttaagatccaaatcgagctcttcaaagtcaccatattgtctacttgtactccctccatccttctcttttccttt |
289 |
Q |
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|||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32367320 |
agatcttaagttctaaatcatgctcttcaaagtcaccatattgtctacttgtactccctccatctttctcttttccttt |
32367242 |
T |
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