View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17676_high_5 (Length: 529)
Name: NF17676_high_5
Description: NF17676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17676_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 476; Significance: 0; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 19 - 518
Target Start/End: Complemental strand, 19607969 - 19607470
Alignment:
| Q |
19 |
agattcctataaacttgacccactgttccgatcttgaaggcttatacttgagagggaacaatttgattggaaaaattccaattgaaatcacctctcttca |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19607969 |
agattcctataaacttgacccactgttccgatcttgaaggcttatacttgagagggaacaatttgattggaaaaatcccaattgaaatcacctctcttca |
19607870 |
T |
|
| Q |
119 |
aaagcttcaagtacttcatattcggaataacaagttaactggaagtgtttcatcatttatagggaatctttcatccttaatatcactttccattggttat |
218 |
Q |
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|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19607869 |
aaagcttcaagtactaaatattcggaataacaagttaactggaagtgtttcatcatttatagggaatctttcatccttaatatcactttccattggttat |
19607770 |
T |
|
| Q |
219 |
aacaacttggagggaaatataccggaagaagtttgtcgcctcaaaaacttgacagggataataatgtttcacaacaaattatctggtacatttccttctt |
318 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19607769 |
aacaacttggagggaaatattccgaaagaagtttgtcgcctcaaaaacttgacagggataataatgtttcacaacaaattatctggtacatttccttctt |
19607670 |
T |
|
| Q |
319 |
gtcttttcaatatgtcatctcttactatgatatcagctgcagctaatcactttaatggctctcttcctcataacatgttcaatactctccgcaatcttga |
418 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
19607669 |
gtcttttcaatatgtcatctcttactatgatatcagctgcagctaatcactttaatggctctcttcctcataacatgttcaatactctccgcaatcttca |
19607570 |
T |
|
| Q |
419 |
aactttagcaattggtgggaatcaaatatcaggtccaatacctacttccattacaaatggttcttccttgacatcatttgttattagtgaaaactatttt |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19607569 |
aactttagcaattggtgggaatcaaatatcaggtccaatacctacttccattacaaatggttcttccttgacatcatttgttattagtgaaaactatttt |
19607470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 215 - 385
Target Start/End: Original strand, 10549094 - 10549264
Alignment:
| Q |
215 |
ttataacaacttggagggaaatataccggaagaagtttgtcgcctcaaaaacttgacagggataataatgtttcacaacaaattatctggtacatttcct |
314 |
Q |
| |
|
||||||||| ||||||||| |||| || ||||| | ||||| |||||||||||| ||| ||| ||||| | ||||||| ||||||||||||||||| |
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|
| T |
10549094 |
ttataacaatttggagggagatattccacaagaaatatgtcgtctcaaaaacttggcagtgatggtaatggtggtcaacaaaatatctggtacatttcct |
10549193 |
T |
|
| Q |
315 |
tcttgtcttttcaatatgtcatctcttactatgatatcagctgcagctaatcactttaatggctctcttcc |
385 |
Q |
| |
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| ||||||| |||||||||||||||||||||||| ||||||||| | ||||| ||| ||||||| ||||| |
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|
| T |
10549194 |
ttgtgtctttacaatatgtcatctcttactatgatctcagctgcatcaaatcagtttgatggctcacttcc |
10549264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 289 - 518
Target Start/End: Complemental strand, 9838162 - 9837933
Alignment:
| Q |
289 |
acaacaaattatctggtacatttccttcttgtcttttcaatatgtcatctcttactatgatatcagctgcagctaatcactttaatggctctcttcc-tc |
387 |
Q |
| |
|
|||||||| |||| ||||||||||| ||||||| | |||||||||||||||||| |||| ||| | |||| ||||||||||| |||||||||||| || |
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|
| T |
9838162 |
acaacaaactatcaggtacatttccaccttgtctctacaatatgtcatctcttacattgatctcaacagcagataatcactttagtggctctcttccatc |
9838063 |
T |
|
| Q |
388 |
ataacatgttcaatactctccgcaatcttgaaactttagcaattggtgggaatcaaatatcaggtccaatacctacttccattacaaatggttcttcctt |
487 |
Q |
| |
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| || |||||| | ||||||| ||||| | |||| | ||| || |||||| |||| | |||| |||| || ||||||||| ||||| |||| | || |
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|
| T |
9838062 |
a-aatatgttccaaactctccctaatctccgatcttttgaaataggagggaataaaatcttaggttcaatcccaacttccattgtaaatgcttctacttt |
9837964 |
T |
|
| Q |
488 |
gacatcatttgttattagtgaaaactatttt |
518 |
Q |
| |
|
||||||||||| ||||||| |||| ||||| |
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|
| T |
9837963 |
gacatcatttgacattagtggaaaccatttt |
9837933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 408
Target Start/End: Complemental strand, 10590260 - 10590142
Alignment:
| Q |
290 |
caacaaattatctggtacatttccttcttgtcttttcaatatgtcatctcttactatgatatcagctgcagctaatcactttaatggctctcttcctcat |
389 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||| ||||||||||||||||| ||| |||| |||||| ||| ||||| |||||||||||| | |
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|
| T |
10590260 |
caacaaattgtctggtacatttctttcttgtctttataatatgtcatctcttacggggatctcagttgcagcgaatagctttagtggctctcttccgccc |
10590161 |
T |
|
| Q |
390 |
aacatgttcaatactctcc |
408 |
Q |
| |
|
|| |||||||| ||||||| |
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|
| T |
10590160 |
aatatgttcaacactctcc |
10590142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 10548938 - 10549004
Alignment:
| Q |
59 |
cttatacttgagagggaacaatttgattggaaaaattccaattgaaatcacctctcttcaaaagctt |
125 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
10548938 |
cttatccttgagagggaacaatttgattggaaaaataccaattgaaattgggtctcttcaaaagctt |
10549004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 313 - 485
Target Start/End: Original strand, 7191404 - 7191576
Alignment:
| Q |
313 |
cttcttgtcttttcaatatgtcatctcttactatgatatcagctgcagctaatcactttaatggctctcttcctcataacatgttcaatactctccgcaa |
412 |
Q |
| |
|
|||||||||||| |||||||||||||||||| | || || |||||| ||| | |||||||| |||||||| | || |||||||| || ||| ||| |
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|
| T |
7191404 |
cttcttgtctttataatatgtcatctcttactttcatttccgctgcattcaataattttaatggatctcttccacccaatatgttcaacaccctctccaa |
7191503 |
T |
|
| Q |
413 |
tcttgaaactttagcaattggtgggaatcaaatatcaggtccaatacctacttccattacaaatggttcttcc |
485 |
Q |
| |
|
|||| || ||||||||| || || |||||| | |||||| |||| |||| ||||||| |||||| ||||||| |
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|
| T |
7191504 |
tcttcaatatttagcaatcggaggaaatcaattctcaggtacaatccctatttccatttcaaatgcttcttcc |
7191576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 10557065 - 10557135
Alignment:
| Q |
59 |
cttatacttgagagggaacaatttgattggaaaaattccaattgaaatcacctctcttcaaaagcttcaag |
129 |
Q |
| |
|
||||| |||||| ||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
10557065 |
cttatccttgagtgggaataatttgatcggaaaaataccaattgaaataggctctcttcaaaagcttcaag |
10557135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 290 - 400
Target Start/End: Original strand, 10557296 - 10557406
Alignment:
| Q |
290 |
caacaaattatctggtacatttccttcttgtcttttcaatatgtcatctcttactatgatatcagctgcagctaatcactttaatggctctcttcctcat |
389 |
Q |
| |
|
||||||| ||||||||||| ||||||| ||||||| ||| |||||||||||| |||| | ||| ||||||| ||||| | ||||||||||||| | |
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|
| T |
10557296 |
caacaaactatctggtacagttccttcatgtctttacaacatgtcatctcttgctatcttttcatctgcagccaatcaaatagatggctctcttccaccc |
10557395 |
T |
|
| Q |
390 |
aacatgttcaa |
400 |
Q |
| |
|
||||||||||| |
|
|
| T |
10557396 |
aacatgttcaa |
10557406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 415
Target Start/End: Original strand, 10603129 - 10603254
Alignment:
| Q |
290 |
caacaaattatctggtacatttccttcttgtcttttcaatatgtcatctcttactatgatatcagctgcagctaatcactttaatggctctcttcctcat |
389 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||| |||||||| |||| |||| ||||| ||| ||||| |||||||||||| | |
|
|
| T |
10603129 |
caacaaattgtctggtacatttccttcttgtctttataatatgacatctcttcaagtgatctcagttgcagtgaatagctttagtggctctcttccaccc |
10603228 |
T |
|
| Q |
390 |
aacatgttcaatactctccgcaatct |
415 |
Q |
| |
|
|| |||||| | ||||||| |||||| |
|
|
| T |
10603229 |
aatatgttccacactctccccaatct |
10603254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 337
Target Start/End: Original strand, 10599469 - 10599516
Alignment:
| Q |
290 |
caacaaattatctggtacatttccttcttgtcttttcaatatgtcatc |
337 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10599469 |
caacaaattgtctggtacatttccttcttgtctttataatatgtcatc |
10599516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 408
Target Start/End: Original strand, 10579383 - 10579501
Alignment:
| Q |
290 |
caacaaattatctggtacatttccttcttgtcttttcaatatgtcatctcttactatgatatcagctgcagctaatcactttaatggctctcttcctcat |
389 |
Q |
| |
|
|||||| || ||||||||||||| ||||||||||| ||||||||||||||||| ||| |||| || ||| ||| ||||| ||| |||||||| | |
|
|
| T |
10579383 |
caacaagttgtctggtacatttctttcttgtctttataatatgtcatctcttacggggatctcagttgaagcgaatagctttagtggttctcttccaccc |
10579482 |
T |
|
| Q |
390 |
aacatgttcaatactctcc |
408 |
Q |
| |
|
|| |||||||| ||||||| |
|
|
| T |
10579483 |
aatatgttcaacactctcc |
10579501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 344
Target Start/End: Complemental strand, 10654027 - 10653981
Alignment:
| Q |
298 |
tatctggtacatttccttcttgtcttttcaatatgtcatctcttact |
344 |
Q |
| |
|
||||||||||||||| ||||||| ||| |||||||||||||||||| |
|
|
| T |
10654027 |
tatctggtacatttcattcttgtttttataatatgtcatctcttact |
10653981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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