View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17676_high_8 (Length: 459)

Name: NF17676_high_8
Description: NF17676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17676_high_8
NF17676_high_8
[»] chr1 (2 HSPs)
chr1 (147-443)||(39386021-39386318)
chr1 (11-89)||(39386357-39386435)
[»] chr4 (1 HSPs)
chr4 (157-327)||(18177013-18177183)
[»] chr3 (2 HSPs)
chr3 (157-327)||(13216911-13217081)
chr3 (157-209)||(13219253-13219305)
[»] scaffold0002 (2 HSPs)
scaffold0002 (173-319)||(240644-240790)
scaffold0002 (158-197)||(238405-238444)
[»] chr5 (1 HSPs)
chr5 (157-207)||(39047937-39047987)
[»] chr7 (2 HSPs)
chr7 (238-312)||(14541440-14541517)
chr7 (157-209)||(14541369-14541421)
[»] chr6 (1 HSPs)
chr6 (266-305)||(18999115-18999154)
[»] scaffold0380 (1 HSPs)
scaffold0380 (157-203)||(15663-15709)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 147 - 443
Target Start/End: Complemental strand, 39386318 - 39386021
Alignment:
Q  147 ttcatagtcaatgaccggcaatgagaaaaagaattgcaatagctaaatgataatgtgcaatattgatcagcaatagaccccaagttagtggatctaatcc 246  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||  |||||| ||||||||| ||||||||||||||||||    
T  39386318 ttcatagtcaatgaccggcaatgcgaaaaagaattacaatagctaaatgatgatgtgcaatatcaatcagccatagaccccgagttagtggatctaatcc 39386219  T
Q  247 tccacgaaaagtaagaaagtccgcgtattttgaccaatttaaggtaaaaaatggggttgctccttcgacaaaatttggatagattaattactc--attta 344  Q
    |||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||| ||||| |||||||||||||||||||  ||||     
T  39386218 tccatgaaaagtaagaaagtccacgtattttgaccaattcaaggtaaaaaatggggttgttccttcggcaaaacttggatagattaattactcatatttg 39386119  T
Q  345 catcccacactctctccttttaagtannnnnnnnnactggaaacctatatatattagctaatagaaagaccaaagtgcaagaagtatttgagatgatac 443  Q
    ||||||||||||||||||||||||||         | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39386118 catcccacactctctccttttaagtattttttttaa-tggaaacgtatatatattagctaatagaaagaccaaagtgcaagaagtatttgagatgatac 39386021  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 39386435 - 39386357
Alignment:
Q  11 cataggatgggaaaactgcatttaagcctacatttaacttatcatgccatcaaacggctcctaagagattttcaatacg 89  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  39386435 cataagatgggaaaactgcatttaagcctacttttaacttatcatgccatcaaacggctcctaagacattttcaatacg 39386357  T

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Target: chr4 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 157 - 327
Target Start/End: Original strand, 18177013 - 18177183
Alignment:
Q  157 atgaccggcaatgagaaaaagaattgcaatagctaaatgataatgtgcaatattgatcagcaatagaccccaagttagtggatctaatcctccacgaaaa 256  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||||||||| ||||||||||||||||||||||||||||    
T  18177013 atgaccggcaatgagaaaaagaattgcaatagctaaatgatgatgtgcaatatcggtcagccatagacccccagttagtggatctaatcctccacgaaaa 18177112  T
Q  257 gtaagaaagtccgcgtattttgaccaatttaaggtaaaaaatggggttgctccttcgacaaaatttggata 327  Q
    || |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||    
T  18177113 gttagaaagtccgcgtattttgaccaattcaaggtaaaaaatggggttgctccttcggcaaaacttggata 18177183  T

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Target: chr3 (Bit Score: 135; Significance: 4e-70; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 157 - 327
Target Start/End: Complemental strand, 13217081 - 13216911
Alignment:
Q  157 atgaccggcaatgagaaaaagaattgcaatagctaaatgataatgtgcaatattgatcagcaatagaccccaagttagtggatctaatcctccacgaaaa 256  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||||||||| ||||||||||||||||||||||||||||    
T  13217081 atgaccggcaatgagaaaaagaattgcaatagctaaatgatgatgtgcaatatcggtcagccatagacccccagttagtggatctaatcctccacgaaaa 13216982  T
Q  257 gtaagaaagtccgcgtattttgaccaatttaaggtaaaaaatggggttgctccttcgacaaaatttggata 327  Q
    || |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||    
T  13216981 gttagaaagtccgcgtattttgaccaattcaaggtaaaaaatggggttgctccttcggcaaaacttggata 13216911  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 13219305 - 13219253
Alignment:
Q  157 atgaccggcaatgagaaaaagaattgcaatagctaaatgataatgtgcaatat 209  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||| ||||    
T  13219305 atgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgtgccatat 13219253  T

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Target: scaffold0002 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 173 - 319
Target Start/End: Original strand, 240644 - 240790
Alignment:
Q  173 aaaagaattgcaatagctaaatgataatgtgcaatattgatcagcaatagaccccaagttagtggatctaatcctccacgaaaagtaagaaagtccgcgt 272  Q
    |||||||| ||||||||||||||||  |||||||||| | ||||| | ||||| |  |||| |||||||| ||||||||||||||| ||||| || ||||    
T  240644 aaaagaatagcaatagctaaatgatggtgtgcaatatcggtcagccagagaccaccggttactggatctagtcctccacgaaaagtcagaaattctgcgt 240743  T
Q  273 attttgaccaatttaaggtaaaaaatggggttgctccttcgacaaaa 319  Q
    |||| ||||||||||| || ||||| ||||||||||||||| |||||    
T  240744 atttggaccaatttaaagtgaaaaaaggggttgctccttcggcaaaa 240790  T

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Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 238405 - 238444
Alignment:
Q  158 tgaccggcaatgagaaaaagaattgcaatagctaaatgat 197  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  238405 tgaccggcaatgagaaaaataaatgcaatagctaaatgat 238444  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 39047987 - 39047937
Alignment:
Q  157 atgaccggcaatgagaaaaagaattgcaatagctaaatgataatgtgcaat 207  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  39047987 atgaccggtaatgagaaaaagaattgcaatagctaaatgatgatgtgcaat 39047937  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 312
Target Start/End: Original strand, 14541440 - 14541517
Alignment:
Q  238 atctaatcctccacgaaaagtaagaaagtccgcgtattttgaccaatttaaggtaaaaaa---tggggttgctccttc 312  Q
    |||||||| ||||||||||||||||||||  | ||| ||||||||||| |||||||||||   |||||||||||||||    
T  14541440 atctaatcatccacgaaaagtaagaaagtttgtgtaatttgaccaattcaaggtaaaaaaaactggggttgctccttc 14541517  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 14541369 - 14541421
Alignment:
Q  157 atgaccggcaatgagaaaaagaattgcaatagctaaatgataatgtgcaatat 209  Q
    ||||||| ||||||||||||||||||||||||| ||||||| | |||||||||    
T  14541369 atgaccgacaatgagaaaaagaattgcaatagcaaaatgatgacgtgcaatat 14541421  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 305
Target Start/End: Original strand, 18999115 - 18999154
Alignment:
Q  266 tccgcgtattttgaccaatttaaggtaaaaaatggggttg 305  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  18999115 tccgcgtattttgatcaattcaaggtaaaaaatggggttg 18999154  T

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Target: scaffold0380 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 15709 - 15663
Alignment:
Q  157 atgaccggcaatgagaaaaagaattgcaatagctaaatgataatgtg 203  Q
    ||||| ||||||| ||||||||||||||||||||| ||||| |||||    
T  15709 atgactggcaatgtgaaaaagaattgcaatagctagatgatgatgtg 15663  T

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