View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17676_high_9 (Length: 444)

Name: NF17676_high_9
Description: NF17676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17676_high_9
NF17676_high_9
[»] chr2 (37 HSPs)
chr2 (189-427)||(37883439-37883679)
chr2 (177-280)||(41176796-41176900)
chr2 (179-281)||(3390365-3390468)
chr2 (178-280)||(25516428-25516531)
chr2 (179-281)||(25771378-25771481)
chr2 (179-281)||(27024217-27024320)
chr2 (179-281)||(40125322-40125425)
chr2 (189-291)||(42105840-42105943)
chr2 (189-270)||(3464903-3464985)
chr2 (177-277)||(44167785-44167886)
chr2 (177-270)||(44441330-44441424)
chr2 (179-291)||(3602908-3603021)
chr2 (177-257)||(27191411-27191492)
chr2 (177-257)||(27841225-27841306)
chr2 (189-280)||(43566811-43566902)
chr2 (189-291)||(6089816-6089919)
chr2 (193-263)||(41841900-41841971)
chr2 (189-270)||(36507875-36507957)
chr2 (199-279)||(31263052-31263133)
chr2 (177-244)||(5930393-5930461)
chr2 (177-268)||(19581079-19581171)
chr2 (189-291)||(25237414-25237517)
chr2 (201-286)||(4878795-4878880)
chr2 (179-252)||(10589000-10589074)
chr2 (178-287)||(29812692-29812802)
chr2 (226-284)||(32909006-32909064)
chr2 (200-280)||(16720916-16720997)
chr2 (189-269)||(34479901-34479982)
chr2 (179-223)||(15674052-15674096)
chr2 (205-252)||(44951464-44951512)
chr2 (190-252)||(9715634-9715697)
chr2 (177-291)||(25623121-25623236)
chr2 (177-223)||(7640432-7640478)
chr2 (207-291)||(24500443-24500530)
chr2 (189-251)||(26491266-26491329)
chr2 (198-258)||(3398076-3398139)
chr2 (189-244)||(5071458-5071514)
[»] scaffold0045 (1 HSPs)
scaffold0045 (177-270)||(9724-9818)
[»] chr5 (21 HSPs)
chr5 (179-291)||(18472803-18472913)
chr5 (179-270)||(6887256-6887348)
chr5 (179-281)||(31645762-31645865)
chr5 (179-280)||(33486648-33486750)
chr5 (177-280)||(34893992-34894096)
chr5 (177-268)||(41063472-41063562)
chr5 (189-291)||(41357961-41358064)
chr5 (179-280)||(2415334-2415436)
chr5 (177-268)||(37424938-37425031)
chr5 (177-280)||(28618538-28618642)
chr5 (180-289)||(8812231-8812339)
chr5 (177-288)||(22397624-22397736)
chr5 (189-292)||(4070477-4070580)
chr5 (177-260)||(6647989-6648073)
chr5 (202-258)||(15710496-15710553)
chr5 (190-258)||(34950432-34950501)
chr5 (179-290)||(41554411-41554522)
chr5 (200-283)||(41988115-41988199)
chr5 (178-244)||(19646118-19646185)
chr5 (202-269)||(34843858-34843927)
chr5 (179-223)||(29310427-29310471)
[»] chr3 (34 HSPs)
chr3 (177-280)||(20201134-20201238)
chr3 (177-280)||(20203316-20203420)
chr3 (180-291)||(42106035-42106146)
chr3 (177-280)||(50519724-50519828)
chr3 (177-279)||(35501835-35501937)
chr3 (177-280)||(22286825-22286929)
chr3 (179-281)||(1165474-1165577)
chr3 (177-291)||(21803453-21803568)
chr3 (177-279)||(25374146-25374248)
chr3 (177-291)||(22843972-22844089)
chr3 (207-291)||(29776782-29776867)
chr3 (177-279)||(20251586-20251690)
chr3 (177-280)||(41882484-41882588)
chr3 (179-281)||(43029616-43029719)
chr3 (191-290)||(33978010-33978110)
chr3 (179-279)||(40462073-40462174)
chr3 (177-280)||(43242744-43242849)
chr3 (179-258)||(11846571-11846651)
chr3 (198-257)||(37051581-37051641)
chr3 (189-248)||(25939564-25939622)
chr3 (179-245)||(27831081-27831147)
chr3 (210-279)||(27056000-27056070)
chr3 (198-291)||(43839613-43839707)
chr3 (206-279)||(47914688-47914762)
chr3 (177-261)||(53426757-53426842)
chr3 (180-283)||(913397-913500)
chr3 (177-256)||(2598041-2598121)
chr3 (206-280)||(28995402-28995472)
chr3 (224-279)||(14741438-14741493)
chr3 (189-244)||(50460164-50460220)
chr3 (177-258)||(1220291-1220373)
chr3 (197-258)||(21086036-21086098)
chr3 (200-244)||(1806559-1806604)
chr3 (177-291)||(36540747-36540865)
[»] chr1 (24 HSPs)
chr1 (189-291)||(14717330-14717433)
chr1 (179-290)||(22344990-22345102)
chr1 (189-280)||(30853871-30853963)
chr1 (177-291)||(37685172-37685286)
chr1 (177-291)||(37700232-37700346)
chr1 (177-258)||(38646540-38646622)
chr1 (177-258)||(52839379-52839461)
chr1 (189-268)||(44514078-44514158)
chr1 (193-270)||(22032182-22032260)
chr1 (177-252)||(6212962-6213038)
chr1 (189-252)||(33703597-33703661)
chr1 (221-290)||(26199521-26199590)
chr1 (190-280)||(27469821-27469912)
chr1 (177-223)||(630861-630907)
chr1 (177-223)||(44562825-44562871)
chr1 (221-291)||(900059-900129)
chr1 (226-280)||(4564485-4564539)
chr1 (177-223)||(5832225-5832271)
chr1 (189-244)||(13691846-13691903)
chr1 (189-278)||(46589109-46589202)
chr1 (177-238)||(52839497-52839559)
chr1 (181-222)||(33125903-33125943)
chr1 (227-279)||(15276558-15276610)
chr1 (183-223)||(40646564-40646604)
[»] chr7 (25 HSPs)
chr7 (179-280)||(49166861-49166963)
chr7 (177-280)||(24470329-24470433)
chr7 (177-280)||(24475277-24475381)
chr7 (178-286)||(35141830-35141939)
chr7 (189-291)||(40775190-40775293)
chr7 (189-270)||(47749678-47749760)
chr7 (179-279)||(28015291-28015392)
chr7 (177-280)||(8611698-8611802)
chr7 (179-270)||(23177659-23177752)
chr7 (177-264)||(35135259-35135347)
chr7 (177-258)||(8319269-8319352)
chr7 (177-251)||(25855296-25855375)
chr7 (202-279)||(37399551-37399629)
chr7 (189-257)||(14734138-14734207)
chr7 (177-285)||(23732469-23732578)
chr7 (204-291)||(33530569-33530657)
chr7 (181-291)||(41748581-41748690)
chr7 (189-280)||(10250569-10250660)
chr7 (224-291)||(11001784-11001850)
chr7 (189-224)||(44681453-44681488)
chr7 (189-238)||(29804764-29804814)
chr7 (179-266)||(5025134-5025223)
chr7 (180-248)||(24045311-24045380)
chr7 (177-254)||(47156357-47156434)
chr7 (221-277)||(35661470-35661526)
[»] chr4 (32 HSPs)
chr4 (177-280)||(54420788-54420892)
chr4 (177-288)||(28588487-28588599)
chr4 (189-283)||(1657658-1657753)
chr4 (179-281)||(9661786-9661889)
chr4 (177-268)||(16991818-16991910)
chr4 (189-283)||(46729007-46729104)
chr4 (177-280)||(3168974-3169078)
chr4 (179-269)||(4634228-4634319)
chr4 (177-280)||(1646017-1646121)
chr4 (180-277)||(43156713-43156812)
chr4 (221-291)||(9474630-9474700)
chr4 (189-279)||(6408374-6408466)
chr4 (205-291)||(37869520-37869607)
chr4 (179-224)||(42972029-42972074)
chr4 (223-291)||(38434544-38434612)
chr4 (190-244)||(14542601-14542656)
chr4 (191-276)||(6789949-6790034)
chr4 (179-291)||(30416700-30416812)
chr4 (199-290)||(29577183-29577275)
chr4 (189-264)||(51646043-51646119)
chr4 (189-248)||(35338361-35338420)
chr4 (207-289)||(40859587-40859669)
chr4 (189-257)||(3673580-3673649)
chr4 (189-279)||(7242857-7242945)
chr4 (190-238)||(4959664-4959712)
chr4 (209-279)||(9549412-9549483)
chr4 (177-223)||(23067924-23067970)
chr4 (189-265)||(4622799-4622875)
chr4 (189-257)||(33021014-33021083)
chr4 (178-222)||(1124929-1124973)
chr4 (189-244)||(34115740-34115796)
chr4 (177-291)||(38546188-38546301)
[»] chr8 (29 HSPs)
chr8 (188-290)||(37719775-37719878)
chr8 (177-277)||(9269958-9270059)
chr8 (189-281)||(23766675-23766768)
chr8 (190-291)||(16937428-16937532)
chr8 (190-291)||(14115882-14115983)
chr8 (177-270)||(31874029-31874122)
chr8 (179-291)||(15665460-15665575)
chr8 (190-291)||(44295232-44295341)
chr8 (177-258)||(10042717-10042799)
chr8 (202-289)||(32256823-32256910)
chr8 (189-285)||(37658893-37658992)
chr8 (177-291)||(36545857-36545971)
chr8 (177-286)||(9992593-9992703)
chr8 (201-286)||(31713135-31713220)
chr8 (204-280)||(37129761-37129837)
chr8 (198-257)||(14327436-14327496)
chr8 (199-241)||(18190942-18190984)
chr8 (189-257)||(32061751-32061820)
chr8 (177-280)||(7281203-7281307)
chr8 (182-245)||(31147881-31147945)
chr8 (202-252)||(3680883-3680934)
chr8 (202-252)||(8073471-8073522)
chr8 (183-226)||(35580334-35580377)
chr8 (244-289)||(3925758-3925803)
chr8 (181-258)||(28298824-28298901)
chr8 (228-280)||(16996988-16997040)
chr8 (183-223)||(18890908-18890948)
chr8 (177-252)||(26937487-26937563)
chr8 (187-223)||(44577915-44577951)
[»] chr6 (20 HSPs)
chr6 (177-279)||(16913263-16913366)
chr6 (189-280)||(7049181-7049273)
chr6 (179-253)||(10744540-10744615)
chr6 (177-251)||(32457609-32457684)
chr6 (178-291)||(32804218-32804331)
chr6 (177-291)||(20844930-20845046)
chr6 (192-286)||(32574381-32574476)
chr6 (189-270)||(8644189-8644271)
chr6 (179-264)||(12576556-12576642)
chr6 (204-291)||(31804195-31804283)
chr6 (177-279)||(32257919-32258021)
chr6 (180-257)||(4663899-4663977)
chr6 (183-258)||(27575109-27575185)
chr6 (177-275)||(548941-549038)
chr6 (189-223)||(13234195-13234229)
chr6 (177-223)||(19759780-19759826)
chr6 (212-279)||(8633275-8633343)
chr6 (198-259)||(31747915-31747977)
chr6 (198-250)||(34020582-34020635)
chr6 (192-251)||(891551-891611)
[»] scaffold1294 (1 HSPs)
scaffold1294 (190-280)||(714-805)
[»] scaffold0665 (1 HSPs)
scaffold0665 (190-291)||(1181-1282)
[»] scaffold0011 (1 HSPs)
scaffold0011 (178-269)||(10964-11056)
[»] scaffold0340 (1 HSPs)
scaffold0340 (177-281)||(11853-11957)
[»] scaffold0012 (1 HSPs)
scaffold0012 (202-280)||(244568-244647)
[»] scaffold0316 (1 HSPs)
scaffold0316 (190-291)||(12292-12385)


Alignment Details
Target: chr2 (Bit Score: 173; Significance: 7e-93; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 189 - 427
Target Start/End: Complemental strand, 37883679 - 37883439
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggggaag 287  Q
    |||||||| | | |||||||||||||||||||||| ||||||||||||||||||||| ||| ||   |||| ||||||||||| ||||||||||||||||    
T  37883679 gtgattttggattaaaaattgaccctaaatcacccctctttggtggatgaaggagaagaaattatgattttagtgacggctcacaagagagaaggggaag 37883580  T
Q  288 agag-gatcgttttttatatgttctccttattaaaggtaacatgaggaaagcaaatttgatggatggcaatcaccctctaaagcatcagctagcaagaca 386  Q
    |||  |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37883579 agatagatcattttttatatgttctctttattaaaggtaacatgaggaaagcaaatttgatggatggcaatcaccctctaaagcatcagctagcaagaca 37883480  T
Q  387 tgtctgagttgtgagagaaacttatgtggctgagttgaaag 427  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  37883479 tgtctgagttgtgagagaaacttatgtggctgagttgaaag 37883439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 177 - 280
Target Start/End: Complemental strand, 41176900 - 41176796
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    ||||||||||| ||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||| |||||||||||| | ||    
T  41176900 cgagttagatgggtggttttgggtcaaaaattgaccctaaatcacccctctttggtggatgaaggagaagaaactagggtttgtgtgacggctcacagga 41176801  T
Q  276 gagaa 280  Q
    |||||    
T  41176800 gagaa 41176796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 179 - 281
Target Start/End: Complemental strand, 3390468 - 3390365
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagaga 277  Q
    ||||||| | |||||||| |||||||||||||||||||||||||| |||||| |||||||||||||| ||||||| ||||| |||||||||||  |||||    
T  3390468 agttagaggggtgattttgggtcaaaaattgaccctaaatcacccctctttgatggatgaaggagaagaaactagggttttggtgacggctcagtagaga 3390369  T
Q  278 gaag 281  Q
    ||||    
T  3390368 gaag 3390365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 178 - 280
Target Start/End: Complemental strand, 25516531 - 25516428
Alignment:
Q  178 gagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagag 276  Q
    |||||||| | |||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||| |||| |||||||||||| | |||    
T  25516531 gagttagaggggtgattttgggtcaaatattgaccctaaatcacccctctttggtggatgaaggagaagaaactagggtttgtgtgacggctcacaggag 25516432  T
Q  277 agaa 280  Q
    ||||    
T  25516431 agaa 25516428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 179 - 281
Target Start/End: Complemental strand, 25771481 - 25771378
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagaga 277  Q
    ||||||| | |||||||| |||||||||||||||||||||||||| |||||| |||||||||||||| ||||||| ||||| |||||||||||  |||||    
T  25771481 agttagaggggtgattttgggtcaaaaattgaccctaaatcacccctctttgatggatgaaggagaagaaactagggttttggtgacggctcactagaga 25771382  T
Q  278 gaag 281  Q
    ||||    
T  25771381 gaag 25771378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 179 - 281
Target Start/End: Original strand, 27024217 - 27024320
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagaga 277  Q
    ||||||| | |||||||| ||||||||| |||||||||||||||| |||||| |||||||||||||| ||||||||||||| |||||| ||||  |||||    
T  27024217 agttagaggggtgattttgggtcaaaaaatgaccctaaatcacccatctttgatggatgaaggagaagaaactagagttttggtgacgactcactagaga 27024316  T
Q  278 gaag 281  Q
    ||||    
T  27024317 gaag 27024320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 179 - 281
Target Start/End: Complemental strand, 40125425 - 40125322
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagaga 277  Q
    ||||||| | |||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||  |||||  |||||||||| ||||||    
T  40125425 agttagaggggtgattttgggtcaaaaattaaccctaaatcacccctctttggtggatgaaggagaagaaactaaggttttgatgacggctcacaagaga 40125326  T
Q  278 gaag 281  Q
    ||||    
T  40125325 gaag 40125322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 189 - 291
Target Start/End: Original strand, 42105840 - 42105943
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggggaag 287  Q
    |||||||| |||||||||||||||||||| ||||| |||||||||||||||||| || ||| ||| ||||||||||||||| |  |||||||||| ||||    
T  42105840 gtgattttgggtcaaaaattgaccctaaagcacccctctttggtggatgaaggaaaataaattagggtttttgtgacggctaacgagagagaaggagaag 42105939  T
Q  288 agag 291  Q
    ||||    
T  42105940 agag 42105943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 189 - 270
Target Start/End: Complemental strand, 3464985 - 3464903
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctca 270  Q
    |||||||| | |||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||| ||||||||||||    
T  3464985 gtgattttggatcaaaaattgaccctaaatcacccctctttggtggatgaaggagaagaaattagagtttgtgtgacggctca 3464903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 177 - 277
Target Start/End: Original strand, 44167785 - 44167886
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    ||||||||| | |||||||| ||||||||||||||| || ||||||| ||||||||||||||||||||| ||||||| | || |||||||||||| ||||    
T  44167785 cgagttagaggggtgattttgggtcaaaaattgaccatatatcacccctctttggtggatgaaggagaagaaactagggcttgtgtgacggctcacaaga 44167884  T
Q  276 ga 277  Q
    ||    
T  44167885 ga 44167886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 44441424 - 44441330
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctca 270  Q
    |||||||||| ||||||||| |||||||||||||| |||| |||||| |||||| |||||||| ||||||||| || |||||| |||||||||||    
T  44441424 cgagttagataagtgattttgggtcaaaaattgactctaagtcacccatctttgatggatgaaagagaaaaaattaaagttttggtgacggctca 44441330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 179 - 291
Target Start/End: Complemental strand, 3603021 - 3602908
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagaga 277  Q
    ||||||| | ||||||||  ||||||| |||||| |||||||||| |||||| |||||||||||||| |||||||  |||| ||||||||||| ||||||    
T  3603021 agttagaggggtgattttgagtcaaaagttgaccataaatcacccatctttgatggatgaaggagaagaaactaggattttggtgacggctcacaagaga 3602922  T
Q  278 gaaggggaagagag 291  Q
    ||| ||||| ||||    
T  3602921 gaaagggaaaagag 3602908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 27191411 - 27191492
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagttt 257  Q
    ||||||||| | |||||||  ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||    
T  27191411 cgagttagaggggtgatttagggtcaaaaattgaccctaaatcatccctctttggtggatgaaggagaagaaactagggttt 27191492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 27841225 - 27841306
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagttt 257  Q
    ||||||||| | |||||||  ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||    
T  27841225 cgagttagaggggtgatttagggtcaaaaattgaccctaaatcatccctctttggtggatgaaggagaagaaactagggttt 27841306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 189 - 280
Target Start/End: Complemental strand, 43566902 - 43566811
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaa 280  Q
    |||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||  |||| |||||||||||| | |||||||    
T  43566902 gtgattttgggtcaaaaattgaccctaa-tcacccctctttggtggatgaaggagaagaaactatggtttgtgtgacggctcacaggagagaa 43566811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 189 - 291
Target Start/End: Complemental strand, 6089919 - 6089816
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggggaag 287  Q
    |||||||| ||||||||||||||| |||||||||| |||||| |||||||||||||| ||| ||| ||||||||||  ||||| || |||||| || |||    
T  6089919 gtgattttgggtcaaaaattgaccttaaatcacccctctttgatggatgaaggagaagaaattagggtttttgtgatagctcacaatagagaaaggaaag 6089820  T
Q  288 agag 291  Q
    ||||    
T  6089819 agag 6089816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 193 - 263
Target Start/End: Complemental strand, 41841971 - 41841900
Alignment:
Q  193 ttttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagtttttgtga 263  Q
    |||| ||||||||||||||| ||||||| |||||| || |||||||||||||||||||||||||||| ||||    
T  41841971 ttttgggtcaaaaattgaccataaatcaaccctctatgatggatgaaggagaaaaaactagagttttggtga 41841900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 189 - 270
Target Start/End: Complemental strand, 36507957 - 36507875
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatcaccct-ctttggtggatgaaggagaaaaaactagagtttttgtgacggctca 270  Q
    |||||||| ||||||||||||||||||| ||||| | |||||||||||||||||||| ||||||| | || |||||| |||||    
T  36507957 gtgattttgggtcaaaaattgaccctaagtcaccattctttggtggatgaaggagaagaaactagggcttgtgtgacagctca 36507875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 279
Target Start/End: Original strand, 31263052 - 31263133
Alignment:
Q  199 gtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagaga 279  Q
    |||||| |||||||||||||||||| |||||| ||||||||| ||||||||||| ||||| || ||||||||| || |||||    
T  31263052 gtcaaagattgaccctaaatcacccctctttgatggatgaagaagaaaaaactaaagtttatgggacggctcacaaaagaga 31263133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 177 - 244
Target Start/End: Complemental strand, 5930461 - 5930393
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcacc-ctctttggtggatgaaggagaa 244  Q
    ||||||||| |  ||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  5930461 cgagttagagggatgattttgggtcaaaaattaaccctaaatcacctctctttggtggatgaaggagaa 5930393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 177 - 268
Target Start/End: Original strand, 19581079 - 19581171
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggct 268  Q
    ||||||||| | ||||||||  || |||||||||||| ||||||||| ||||| ||||||||||| ||||||||||  ||||| |||||||||    
T  19581079 cgagttagaggggtgattttgtgttaaaaattgacccaaaatcacccctctttagtggatgaaggtgaaaaaactaaggttttggtgacggct 19581171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 189 - 291
Target Start/End: Original strand, 25237414 - 25237517
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggggaag 287  Q
    |||||||| | |||||| ||||| ||||||||||| |||||  | |||||||||||| |||||||||||||   || |||||| ||||||||| ||||||    
T  25237414 gtgattttggatcaaaagttgactctaaatcacccctctttaatagatgaaggagaataaactagagttttaacgatggctcacaagagagaacgggaag 25237513  T
Q  288 agag 291  Q
    ||||    
T  25237514 agag 25237517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 4878795 - 4878880
Alignment:
Q  201 caaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggggaa 286  Q
    ||||| ||||||||||||||||| |||||| ||| |||||| ||| ||||||||||||| ||||||||||  ||||| |||||||||    
T  4878795 caaaagttgaccctaaatcacccctctttgatgggtgaaggtgaagaaactagagttttggtgacggctc-caagagggaaggggaa 4878880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 10589074 - 10589000
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactag 252  Q
    ||||||| | |||||||| ||||||||||||||||||||||| |||| ||||||||||||||  ||| |||||||    
T  10589074 agttagaggggtgattttgggtcaaaaattgaccctaaatcacccctttttggtggatgaagatgaagaaactag 10589000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 178 - 287
Target Start/End: Original strand, 29812692 - 29812802
Alignment:
Q  178 gagttagatgagtgattttaggtcaaaaattgaccctaaatcacc-ctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagag 276  Q
    |||||||| | ||||||||  |||||||||||||||||||||||| ||||||| ||||||||||  || |||||| | |||| ||| | ||||| || ||    
T  29812692 gagttagaggggtgattttgtgtcaaaaattgaccctaaatcacctctctttgatggatgaaggtaaataaactaaaattttagtggcagctcacaaaag 29812791  T
Q  277 agaaggggaag 287  Q
    |||||| ||||    
T  29812792 agaaggagaag 29812802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 226 - 284
Target Start/End: Complemental strand, 32909064 - 32909006
Alignment:
Q  226 tttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaagggg 284  Q
    |||| |||||||||||||| ||||||| ||||| ||||||||||| |||||||||||||    
T  32909064 tttgatggatgaaggagaagaaactagggttttggtgacggctcacaagagagaagggg 32909006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 280
Target Start/End: Original strand, 16720916 - 16720997
Alignment:
Q  200 tcaaaaattgaccctaaatcacc-ctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaa 280  Q
    ||||||||||||||||||||||| |||| || ||||||||||| | ||||||||  |||| ||||||||||  |||||||||    
T  16720916 tcaaaaattgaccctaaatcacctctctctgatggatgaaggaaagaaaactaggattttggtgacggctcccaagagagaa 16720997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 269
Target Start/End: Complemental strand, 34479982 - 34479901
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctc 269  Q
    |||||||| ||| |||||||||||||| |||| || |||||| |||||||| ||||| ||||||||||||| |||| |||||    
T  34479982 gtgattttgggtaaaaaattgaccctatatcatccatctttgatggatgaatgagaagaaactagagttttggtgatggctc 34479901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 15674052 - 15674096
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaattgaccctaaatcaccc 223  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||    
T  15674052 agttagaggagtgattttgggtcaaaaattgaccctaaatcaccc 15674096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 44951512 - 44951464
Alignment:
Q  205 aattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactag 252  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  44951512 aattgaccctaaatcacccctctttggtggatgaaggagaagaaactag 44951464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 252
Target Start/End: Original strand, 9715634 - 9715697
Alignment:
Q  190 tgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactag 252  Q
    ||||||| | |||||||||||||||||||||||| | |||| |||||||| |||||||||||||    
T  9715634 tgattttggatcaaaaattgaccctaaatcacccatttttgatggatgaaagagaaaaaactag 9715697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 177 - 291
Target Start/End: Original strand, 25623121 - 25623236
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    ||||||| ||| |||||||| |||||||||||||   ||||||| ||||||||| || |||||| | || ||||||| ||||| ||| ||||||| | ||    
T  25623121 cgagttatatgggtgattttgggtcaaaaattgataataaatcacccctctttgatgtatgaagaaaaagaaactagggttttggtggcggctcacagga 25623220  T
Q  276 gagaaggggaagagag 291  Q
    ||||| | ||||||||    
T  25623221 gagaatgagaagagag 25623236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 7640432 - 7640478
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc 223  Q
    ||||||||| | |||||||| ||||||||||||||||||||||||||    
T  7640432 cgagttagaggggtgattttgggtcaaaaattgaccctaaatcaccc 7640478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 291
Target Start/End: Complemental strand, 24500530 - 24500443
Alignment:
Q  207 ttgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggct--cataagagagaaggggaagagag 291  Q
    ||||||||||||||||| ||||| ||||||||||| ||| ||| ||  ||||| |||||||||  ||  |||||||||||||||||||    
T  24500530 ttgaccctaaatcacccatctttagtggatgaaggtgaagaaattaaggttttggtgacggctcccaagagagagaaggggaagagag 24500443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 26491329 - 26491266
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaacta 251  Q
    |||||||| ||||||||||||| | ||||| |||| |||||||||||||| |||||| ||||||    
T  26491329 gtgattttgggtcaaaaattgaacttaaattacccctctttggtggatgatggagaagaaacta 26491266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 258
Target Start/End: Original strand, 3398076 - 3398139
Alignment:
Q  198 ggtcaaaaattgaccctaaatcaccc---tctttggtggatgaaggagaaaaaactagagtttt 258  Q
    ||||||||||||||| |||| |||||   |||||||||||||||| |||||||| ||| |||||    
T  3398076 ggtcaaaaattgaccttaaaccacccccttctttggtggatgaagaagaaaaaaatagggtttt 3398139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 5071458 - 5071514
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaa 244  Q
    ||||||| |||||||||||||||| |||| || ||||| ||| ||||||||||||||    
T  5071458 gtgatttaaggtcaaaaattgaccataaaccacccctcgttgatggatgaaggagaa 5071514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 177 - 270
Target Start/End: Original strand, 9724 - 9818
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagtttttgtgacggctca 270  Q
    ||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  9724 cgagttagaggagtgattttgggtcaaaaattgaccctaaatcatccctctttggtggatgaaggagaagaaactagggtttttgtgacggctca 9818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 179 - 291
Target Start/End: Original strand, 18472803 - 18472913
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaattgaccctaaatcaccctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagag 278  Q
    ||||||| | |||||||| ||||||||||||||||||||||  ||||||||||||||||||| ||| ||||||||||||| ||||||||||  |||||||    
T  18472803 agttagaggggtgattttgggtcaaaaattgaccctaaatc--cctctttggtggatgaaggtgaagaaactagagttttggtgacggctcccaagagag 18472900  T
Q  279 aaggggaagagag 291  Q
    |||||||||||||    
T  18472901 aaggggaagagag 18472913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 179 - 270
Target Start/End: Original strand, 6887256 - 6887348
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctca 270  Q
    ||||||| | |||||||| ||| |||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||| |||||||||||    
T  6887256 agttagaggggtgattttgggttaaaaattgaccctaaatcacccctctttgatggatgaaggagaagaaactagagttttggtgacggctca 6887348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 179 - 281
Target Start/End: Complemental strand, 31645865 - 31645762
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagaga 277  Q
    ||||||| | |||||||| | |||||||||||||||||||||||| |||||  |||||||||||||| ||||||| ||||| |||||||||||  |||||    
T  31645865 agttagaggggtgattttggatcaaaaattgaccctaaatcacccctctttaatggatgaaggagaagaaactagggttttggtgacggctcactagaga 31645766  T
Q  278 gaag 281  Q
    ||||    
T  31645765 gaag 31645762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 179 - 280
Target Start/End: Original strand, 33486648 - 33486750
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagaga 277  Q
    ||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||| ||| ||  ||||| ||||||||||  ||||||    
T  33486648 agttagatgggtgattttgggtcaaaaattgaccctaaatcacccctctttagtggatgaaggtgaagaaattaaggttttggtgacggctcccaagaga 33486747  T
Q  278 gaa 280  Q
    |||    
T  33486748 gaa 33486750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 177 - 280
Target Start/End: Original strand, 34893992 - 34894096
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    ||||||||| | |||||||| ||||||||||||||| ||||||| ||||||||| |||||||||||||| ||||||| |||||  ||  |||||| ||||    
T  34893992 cgagttagaggggtgattttgggtcaaaaattgaccgtaaatcacccctctttgatggatgaaggagaagaaactagggttttgatgttggctcacaaga 34894091  T
Q  276 gagaa 280  Q
    |||||    
T  34894092 gagaa 34894096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 177 - 268
Target Start/End: Original strand, 41063472 - 41063562
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccctctttggtggatgaaggagaaaaaactagagtttttgtgacggct 268  Q
    ||||||||||||||||||||  ||||||||||||||||  ||||||||||||| |||||||||||||| ||| |||  |||| |||||||||    
T  41063472 cgagttagatgagtgattttgagtcaaaaattgaccct-gatcaccctctttgatggatgaaggagaagaaattaggattttggtgacggct 41063562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 189 - 291
Target Start/End: Complemental strand, 41358064 - 41357961
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggggaag 287  Q
    |||||||| |||||||||||||||||||||||||  |||||| |  |||||||| || ||||||||||||| |||  |||||| ||||||||||| ||||    
T  41358064 gtgattttgggtcaaaaattgaccctaaatcacctatctttgatctatgaaggaaaagaaactagagttttggtggtggctcacaagagagaaggagaag 41357965  T
Q  288 agag 291  Q
    ||||    
T  41357964 agag 41357961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 280
Target Start/End: Complemental strand, 2415436 - 2415334
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaattgaccctaaatcacc-ctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagaga 277  Q
    ||||||| | |||||||| |||||||||||||||||||||||||  |||||| ||||||||||| |  ||||||| |||||  |||||||||| ||||||    
T  2415436 agttagaagggtgattttgggtcaaaaattgaccctaaatcacctatctttgatggatgaaggaaattaaactagggttttgatgacggctcacaagaga 2415337  T
Q  278 gaa 280  Q
    |||    
T  2415336 gaa 2415334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 177 - 268
Target Start/End: Complemental strand, 37425031 - 37424938
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaa-aaaactagagtttttgtgacggct 268  Q
    ||||||||| | |||||||| ||||| ||||||||| |||||||||| |||||||||||||||||| || |||||||| ||||| |||||||||    
T  37425031 cgagttagaggcgtgattttgggtcagaaattgaccataaatcacccctctttggtggatgaaggaaaagaaaactagggttttggtgacggct 37424938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 280
Target Start/End: Complemental strand, 28618642 - 28618538
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    ||||||||| | |||||||| ||| ||||||||||| |||||||||| |||||||  |||||||||||| ||||||| | || |||||||||||| | ||    
T  28618642 cgagttagaggggtgattttgggttaaaaattgaccttaaatcacccctctttggctgatgaaggagaagaaactagggcttgtgtgacggctcacagga 28618543  T
Q  276 gagaa 280  Q
    |||||    
T  28618542 gagaa 28618538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 180 - 289
Target Start/End: Original strand, 8812231 - 8812339
Alignment:
Q  180 gttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagag 278  Q
    |||||| | |||||||| ||| |||||||||||||| ||||||| | ||||||||||||||  ||| |||||||||||||||||| |  ||  |||||||    
T  8812231 gttagaggggtgattttgggttaaaaattgaccctatatcacccctttttggtggatgaagatgaagaaactagagtttttgtgaggcttc--aagagag 8812328  T
Q  279 aaggggaagag 289  Q
    |||||||||||    
T  8812329 aaggggaagag 8812339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 177 - 288
Target Start/End: Original strand, 22397624 - 22397736
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcacc--ctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataag 274  Q
    ||||||||||   ||||||| | ||||| ||||||||||||||| |   ||||| ||||||||||||||| ||| ||||||||| ||||||||||| ||     
T  22397624 cgagttagattgatgattttcgatcaaatattgaccctaaatcatctattcttt-gtggatgaaggagaagaaattagagttttggtgacggctcacaaa 22397722  T
Q  275 agagaaggggaaga 288  Q
    ||||||||||||||    
T  22397723 agagaaggggaaga 22397736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 189 - 292
Target Start/End: Complemental strand, 4070580 - 4070477
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagttttt-gtgacggctcataagagagaaggggaa 286  Q
    |||||||| |||||||||| ||||||||||||||| | |||||||||||||| |||| |||||||||||||| ||||||||| | | ||||||| || ||    
T  4070580 gtgattttgggtcaaaaat-gaccctaaatcacccctttttggtggatgaag-agaagaaactagagttttttgtgacggcttacacgagagaaaggaaa 4070483  T
Q  287 gagagg 292  Q
    ||||||    
T  4070482 gagagg 4070477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 6647989 - 6648073
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttg 260  Q
    ||||||||| |||||||||| |||||||| |||||| |||||| ||| |||||| ||||||||||| || ||||||| |||||||    
T  6647989 cgagttagaggagtgattttgggtcaaaatttgaccataaatcgcccctctttgatggatgaaggaaaataaactagggtttttg 6648073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 258
Target Start/End: Complemental strand, 15710553 - 15710496
Alignment:
Q  202 aaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttt 258  Q
    ||||||||||| |||||||||| |||||| ||||||||||| || |||||||||||||    
T  15710553 aaaaattgaccataaatcacccatctttgatggatgaaggaaaagaaactagagtttt 15710496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 34950501 - 34950432
Alignment:
Q  190 tgattttaggtcaaaaattgaccctaaatcacc-ctctttggtggatgaaggagaaaaaactagagtttt 258  Q
    ||||||| |||||| |||||||| |||| |||| |||||||||||||||| ||||||||| ||| |||||    
T  34950501 tgattttgggtcaagaattgaccataaaccacctctctttggtggatgaatgagaaaaaagtagggtttt 34950432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 290
Target Start/End: Complemental strand, 41554522 - 41554411
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagaga 277  Q
    ||||||| | |||||||| | ||||||||||| ||||||||| ||||||||| || ||||||| ||| ||| |||  |||| ||||| ||||   |||||    
T  41554522 agttagaggggtgattttggatcaaaaattgatcctaaatcacccctctttgatgaatgaaggtgaagaaattaggattttggtgacagctc-cgagaga 41554424  T
Q  278 gaaggggaagaga 290  Q
    |||||||||||||    
T  41554423 gaaggggaagaga 41554411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 283
Target Start/End: Complemental strand, 41988199 - 41988115
Alignment:
Q  200 tcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggg 283  Q
    ||||||||||| |||||||||||| |||||| | | |||||||||| ||||||||||||| | || || ||| |||| |||||||    
T  41988199 tcaaaaattgatcctaaatcacccctctttgataggtgaaggagaagaaactagagttttggcgatggttcacaagaaagaaggg 41988115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 19646118 - 19646185
Alignment:
Q  178 gagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaa 244  Q
    |||||||| | |||||||| ||||||| ||||||| |||| ||||| |||||||| ||||||||||||    
T  19646118 gagttagaggggtgattttgggtcaaacattgaccttaaaccacccctctttggtcgatgaaggagaa 19646185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 269
Target Start/End: Complemental strand, 34843927 - 34843858
Alignment:
Q  202 aaaaattgaccctaaatca-ccctctttggtggatgaaggagaa-aaaactagagtttttgtgacggctc 269  Q
    ||||||||||  ||||||| ||||||||||| |||||||||||| |||||||  ||||| ||||||||||    
T  34843927 aaaaattgactataaatcatccctctttggtcgatgaaggagaagaaaactaaggttttggtgacggctc 34843858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 29310427 - 29310471
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaattgaccctaaatcaccc 223  Q
    ||||||| | |||||||| | ||||||||||||||||||||||||    
T  29310427 agttagaggggtgattttggatcaaaaattgaccctaaatcaccc 29310471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 177 - 280
Target Start/End: Original strand, 20201134 - 20201238
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    ||||||||| | |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||    
T  20201134 cgagttagaggggtgattttgggtcaaaaattgaccctaaatcacccctctttggtggatgaaggagaagaaactagggttttcgtgacggctcacaaga 20201233  T
Q  276 gagaa 280  Q
    |||||    
T  20201234 gagaa 20201238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 177 - 280
Target Start/End: Original strand, 20203316 - 20203420
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    ||||||||| | |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||    
T  20203316 cgagttagaggggtgattttgggtcaaaaattgaccctaaatcacccctctttggtggatgaaggagaagaaactagggttttcgtgacggctcacaaga 20203415  T
Q  276 gagaa 280  Q
    |||||    
T  20203416 gagaa 20203420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 180 - 291
Target Start/End: Complemental strand, 42106146 - 42106035
Alignment:
Q  180 gttagatgagtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagag 278  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||  ||| ||||||| ||||| ||||||||||  |||||||    
T  42106146 gttagatgggtgattttaggtcaaaaattgaccctaaatcacccctctttggtggatgaagatgaagaaactagggttttggtgacggctc-caagagag 42106048  T
Q  279 aaggggaagagag 291  Q
    |||||||||||||    
T  42106047 aaggggaagagag 42106035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 177 - 280
Target Start/End: Complemental strand, 50519828 - 50519724
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    ||||||||| | |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||| |||||||||||| ||||    
T  50519828 cgagttagaggggtgattttgggtcaaaaattgaccctaaatcacccatctttggtggatgaaggagaagaaactagggtttgtgtgacggctcacaaga 50519729  T
Q  276 gagaa 280  Q
    |||||    
T  50519728 gagaa 50519724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 177 - 279
Target Start/End: Original strand, 35501835 - 35501937
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagag 276  Q
    ||||||||| | |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||  |||  ||||||||||| |||||    
T  35501835 cgagttagaggggtgattttgggtcaaaaattaaccctaaatcaccctctttggtggatgaaggagaagaaactaggatttcggtgacggctcacaagag 35501934  T
Q  277 aga 279  Q
    |||    
T  35501935 aga 35501937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 177 - 280
Target Start/End: Original strand, 22286825 - 22286929
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    ||||||||| | || |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| | || |||||||||||| | ||    
T  22286825 cgagttagaggggtaattttaggtcaaaaattgaccctaaatcacccctctttggtggatgaaggagaagaaactagggcttgtgtgacggctcacagga 22286924  T
Q  276 gagaa 280  Q
    |||||    
T  22286925 gagaa 22286929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 179 - 281
Target Start/End: Original strand, 1165474 - 1165577
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagaga 277  Q
    ||||||| | |||||||| |||||||||||||||||||||||||| |||||| |||||||||||||| ||||||| ||||| |||||||||||  |||||    
T  1165474 agttagaggggtgattttgggtcaaaaattgaccctaaatcacccctctttgatggatgaaggagaagaaactagggttttggtgacggctcactagaga 1165573  T
Q  278 gaag 281  Q
    ||||    
T  1165574 gaag 1165577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 177 - 291
Target Start/End: Complemental strand, 21803568 - 21803453
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcac-cctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    ||||||||| | |||||||| |||||||||||||| || |||||| |||||||||| |||||||||||| ||||||| ||||| ||||||||||| ||||    
T  21803568 cgagttagaggggtgattttgggtcaaaaattgacactgaatcactcctctttggtagatgaaggagaagaaactagggttttggtgacggctcacaaga 21803469  T
Q  276 gagaaggggaagagag 291  Q
    ||||| ||||| ||||    
T  21803468 gagaaagggaaaagag 21803453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 177 - 279
Target Start/End: Original strand, 25374146 - 25374248
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagag 276  Q
    ||||||||| | |||||||||||||||||||| |||||||||||||||  || ||| |||||||| || ||||||||||||| ||||||||||| || ||    
T  25374146 cgagttagaggggtgattttaggtcaaaaattaaccctaaatcacccttctttgtgaatgaaggaaaagaaactagagttttagtgacggctcacaaaag 25374245  T
Q  277 aga 279  Q
    |||    
T  25374246 aga 25374248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 177 - 291
Target Start/End: Complemental strand, 22844089 - 22843972
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataag- 274  Q
    ||||||||| | |||||||| ||||||||||||||| ||||||| ||||||||| || ||||||||||| ||||||| ||||| ||||||| ||| |||     
T  22844089 cgagttagaggggtgattttgggtcaaaaattgaccttaaatcagccctctttgatgaatgaaggagaataaactagggttttggtgacggttcacaaga 22843990  T
Q  275 -agagaaggggaagagag 291  Q
     | |||||||||||||||    
T  22843989 aatagaaggggaagagag 22843972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 207 - 291
Target Start/End: Original strand, 29776782 - 29776867
Alignment:
Q  207 ttgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggggaagagag 291  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||  ||||| ||||||| ||| ||||||||| ||||| ||||    
T  29776782 ttgaccctaaatcacccctctttggtggatgaaggagaaaaaactaaggttttagtgacggttcacaagagagaaagggaaaagag 29776867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 177 - 279
Target Start/End: Complemental strand, 20251690 - 20251586
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaatt-gaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataag 274  Q
    ||||||||| | |||||||| ||| ||||| | ||||||||||||||| ||||||||||||||||||||| ||||||| ||||  ||||||||||| |||    
T  20251690 cgagttagaagggtgattttgggtaaaaaaatcgaccctaaatcacccctctttggtggatgaaggagaataaactagggtttcggtgacggctcacaag 20251591  T
Q  275 agaga 279  Q
    |||||    
T  20251590 agaga 20251586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 177 - 280
Target Start/End: Original strand, 41882484 - 41882588
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcac-cctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    ||||||||| | || ||||| |||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| | || ||| |||||||| | ||    
T  41882484 cgagttagaggggtaattttgggtcaaaaattgaccctaaatcactcctctttgatggatgaaggagaagaaactagggcttgtgtaacggctcacagga 41882583  T
Q  276 gagaa 280  Q
    |||||    
T  41882584 gagaa 41882588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 179 - 281
Target Start/End: Complemental strand, 43029719 - 43029616
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagaga 277  Q
    ||||||| | |||||||| ||||||||| ||| |||||||||||| |||||| |||||||||||||| ||||||| ||||| |||||| ||||  |||||    
T  43029719 agttagaggggtgattttgggtcaaaaaatgatcctaaatcacccctctttgatggatgaaggagaagaaactagggttttggtgacgactcactagaga 43029620  T
Q  278 gaag 281  Q
    ||||    
T  43029619 gaag 43029616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 191 - 290
Target Start/End: Original strand, 33978010 - 33978110
Alignment:
Q  191 gattttaggtcaaaaattgaccctaaatcaccctctttg-gtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggggaagag 289  Q
    |||||| ||||||||||||||| ||||||||| | |||  ||||||||||||| | |||||||| |||||||||||||||| |||| |||| || |||||    
T  33978010 gattttgggtcaaaaattgaccttaaatcaccatttttttgtggatgaaggaggagaaactagaatttttgtgacggctcacaagaaagaaaggaaagag 33978109  T
Q  290 a 290  Q
    |    
T  33978110 a 33978110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 279
Target Start/End: Original strand, 40462073 - 40462174
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaattgaccctaaatcacc-ctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagaga 277  Q
    ||||||| | |||||||| |||||||| ||||| |||||||||| |||||||||||||||| ||||| ||||||| ||||| | |||| |||| || |||    
T  40462073 agttagaggggtgattttgggtcaaaatttgactctaaatcaccactctttggtggatgaaagagaagaaactagggttttggcgacgtctcacaaaaga 40462172  T
Q  278 ga 279  Q
    ||    
T  40462173 ga 40462174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 177 - 280
Target Start/End: Complemental strand, 43242849 - 43242744
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaa-aaaactagagtttttgtgacggctcataag 274  Q
    ||||||| ||| ||||||||  |||||||| |||||||||||||||| | |||| || ||||||||||| ||||||||  ||| |||||||||||| |||    
T  43242849 cgagttaaatgggtgattttgtgtcaaaaactgaccctaaatcacccttatttgatgaatgaaggagaagaaaactaggatttatgtgacggctcacaag 43242750  T
Q  275 agagaa 280  Q
    ||||||    
T  43242749 agagaa 43242744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 179 - 258
Target Start/End: Complemental strand, 11846651 - 11846571
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaattgaccctaaatcac-cctctttggtggatgaaggagaaaaaactagagtttt 258  Q
    ||||||| | |||||||| | ||||||||| |||||| ||||| |||||| |||||||||||||||||||||||| |||||    
T  11846651 agttagacgggtgattttcgctcaaaaattaaccctatatcactcctcttaggtggatgaaggagaaaaaactagggtttt 11846571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 198 - 257
Target Start/End: Complemental strand, 37051641 - 37051581
Alignment:
Q  198 ggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagttt 257  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||    
T  37051641 ggtcaaaaattgaccctaaatcatccctctttggtggatgaaagagaagaaattagagttt 37051581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 25939564 - 25939622
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatcaccctctttggtggatgaaggagaaaaaa 248  Q
    |||||||| ||||||||||||||||||||||||||| |||| ||||||||||| ||||||    
T  25939564 gtgattttgggtcaaaaattgaccctaaatcaccct-tttgatggatgaaggaaaaaaaa 25939622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 27831147 - 27831081
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaa 245  Q
    ||||||||| ||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||    
T  27831147 agttagatgggtgattttaggtc-aaaattgaccccaaatcacccctctttggtggatgaagaagaaa 27831081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 210 - 279
Target Start/End: Original strand, 27056000 - 27056070
Alignment:
Q  210 accctaaatcaccct-ctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagaga 279  Q
    ||||||||||||||| || ||||||||||||||||||||| ||| ||||| ||||||||||| || |||||    
T  27056000 accctaaatcacccttctctggtggatgaaggagaaaaaattagggttttggtgacggctcacaaaagaga 27056070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 198 - 291
Target Start/End: Original strand, 43839613 - 43839707
Alignment:
Q  198 ggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggggaagagag 291  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||| ||||||| ||||| | |||| || | |||| |||| ||||| ||||    
T  43839613 ggtcaaaaattgaccctaaatcacccatctttagtgaatgaaggagaagaaactagggttttggcgacgactgacaagaaagaaagggaaaagag 43839707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 47914688 - 47914762
Alignment:
Q  206 attgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagaga 279  Q
    |||||||||||||||||| ||||||||||||||||||||| ||| |||  ||| |||||||||||| || |||||    
T  47914688 attgaccctaaatcacccctctttggtggatgaaggagaagaaattaggatttctgtgacggctcacaaaagaga 47914762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 261
Target Start/End: Complemental strand, 53426842 - 53426757
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagtttttgt 261  Q
    ||||||||| | ||||||||  || ||||||||||||||||||| || |||||| |||||||| || || ||||||||||||||||    
T  53426842 cgagttagaggggtgattttgcgtaaaaaattgaccctaaatcatccatctttgatggatgaaagaaaagaaactagagtttttgt 53426757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 283
Target Start/End: Original strand, 913397 - 913500
Alignment:
Q  180 gttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagag 278  Q
    |||||| | |||||||| ||||||||||||||  | ||| |||| ||||||||||||||||  ||| ||||||  ||||| ||||||||||| |||||||    
T  913397 gttagaggggtgattttgggtcaaaaattgactatgaattacccctctttggtggatgaagatgaagaaactaaggttttggtgacggctca-aagagag 913495  T
Q  279 aaggg 283  Q
    |||||    
T  913496 aaggg 913500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 2598121 - 2598041
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcacc-ctctttggtggatgaaggagaaaaaactagagtt 256  Q
    ||||||||| |||||||||| |||||||||| |||  ||||||||| || |||||||||||||||  || |||||||||||    
T  2598121 cgagttagaggagtgattttgggtcaaaaatcgactttaaatcacctctttttggtggatgaaggcaaagaaactagagtt 2598041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 28995402 - 28995472
Alignment:
Q  206 attgaccctaaatcaccctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaa 280  Q
    |||||||| ||||||||   ||||||||||||||||||| ||||||||| ||||||||||||||| || ||||||    
T  28995402 attgacccaaaatcacc---tttggtggatgaaggagaagaaactagag-ttttgtgacggctcacaaaagagaa 28995472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 279
Target Start/End: Original strand, 14741438 - 14741493
Alignment:
Q  224 tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagaga 279  Q
    |||||| |||||||||||||||||||||| |||| |||||||||||| || |||||    
T  14741438 tctttgatggatgaaggagaaaaaactagggtttatgtgacggctcacaaaagaga 14741493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 50460220 - 50460164
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaa 244  Q
    ||||||||| |||||||||||||| ||||||| ||||||||| ||||||||| ||||    
T  50460220 gtgattttatgtcaaaaattgaccttaaatcatccctctttgatggatgaagaagaa 50460164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 1220291 - 1220373
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagtttt 258  Q
    ||||||||| | ||||||||   ||||||||||| ||||||||| ||||||||| | | |||||||||| ||| |||||||||    
T  1220291 cgagttagaggggtgattttgaatcaaaaattgatcctaaatcacccctctttgataggtgaaggagaagaaattagagtttt 1220373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 21086036 - 21086098
Alignment:
Q  197 aggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttt 258  Q
    ||||||| ||||||||| |||| |||| ||||| |||||| |||||||| |||||||||||||    
T  21086036 aggtcaagaattgacccaaaattacccctctttagtggataaaggagaagaaactagagtttt 21086098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 1806559 - 1806604
Alignment:
Q  200 tcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaa 244  Q
    |||||||||||||||||| || ||||||||||||||||||| ||||    
T  1806559 tcaaaaattgaccctaaaccacccctctttggtggatgaagaagaa 1806604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 291
Target Start/End: Original strand, 36540747 - 36540865
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaa----ggagaaaaaa-ctagagtttttgtgacggctca 270  Q
    ||||||||| |  ||| ||| ||||||||| ||||||| ||| | ||||||||||||||||||    |||||||||| ||| |||||| |  ||||||||    
T  36540747 cgagttagaaggttgactttgggtcaaaaactgaccctcaattaaccctctttggtggatgaatgaaggagaaaaaaactaaagttttgg--acggctca 36540844  T
Q  271 taagagagaaggggaagagag 291  Q
     ||||||| ||||||||||||    
T  36540845 caagagaggaggggaagagag 36540865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 189 - 291
Target Start/End: Original strand, 14717330 - 14717433
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggggaag 287  Q
    |||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||| |||||     
T  14717330 gtgaatttaagtcaaaaattgaccctaaatcacccctctttggtggatgaaggagaagaaactagagttttggtgacggctcacaagagagaaagggaaa 14717429  T
Q  288 agag 291  Q
    ||||    
T  14717430 agag 14717433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 179 - 290
Target Start/End: Original strand, 22344990 - 22345102
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagaga 277  Q
    ||||||| | |||||||| ||||||||||||| |||||||||||| |||||| |||||||||||||| ||||||| ||||| |||||||||||  |||||    
T  22344990 agttagaggggtgattttgggtcaaaaattgaacctaaatcacccctctttgatggatgaaggagaagaaactagggttttggtgacggctcactagaga 22345089  T
Q  278 gaaggggaagaga 290  Q
    |||||||||||||    
T  22345090 gaaggggaagaga 22345102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 189 - 280
Target Start/End: Original strand, 30853871 - 30853963
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatcac-cctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaa 280  Q
    |||||||| ||||||||||||||| | |||||| ||||||||||||||||||||||| ||||||| ||||| |||| |||||| |||||||||    
T  30853871 gtgattttgggtcaaaaattgaccttgaatcacacctctttggtggatgaaggagaagaaactagggttttggtgatggctcaaaagagagaa 30853963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 177 - 291
Target Start/End: Original strand, 37685172 - 37685286
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcac-cctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    ||||||||| || ||||||| |||||||||||||| || ||||   |||||||||||||||||||| || |||||||  |||||||||||||||| ||||    
T  37685172 cgagttagaggattgattttgggtcaaaaattgactctcaatcgttcctctttggtggatgaagga-aagaaactaggatttttgtgacggctcacaaga 37685270  T
Q  276 gagaaggggaagagag 291  Q
    |||||| |||||||||    
T  37685271 gagaagaggaagagag 37685286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 177 - 291
Target Start/End: Complemental strand, 37700346 - 37700232
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcac-cctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    ||||||||| || ||||||| |||||||||||||| || ||||   |||||||||||||||||||| || |||||||  |||||||||||||||| ||||    
T  37700346 cgagttagaggattgattttgggtcaaaaattgactctcaatcgttcctctttggtggatgaagga-aagaaactaggatttttgtgacggctcacaaga 37700248  T
Q  276 gagaaggggaagagag 291  Q
    |||||| |||||||||    
T  37700247 gagaagaggaagagag 37700232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 177 - 258
Target Start/End: Complemental strand, 38646622 - 38646540
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcac-cctctttggtggatgaaggagaaaaaactagagtttt 258  Q
    ||||||| ||| |||||||| ||||||||||||||| |||||||| |||||||| | |||||||||||||||| |||||||||    
T  38646622 cgagttacatgggtgattttgggtcaaaaattgaccataaatcactcctctttgatagatgaaggagaaaaaattagagtttt 38646540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 177 - 258
Target Start/End: Complemental strand, 52839461 - 52839379
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagtttt 258  Q
    ||||||||| | |||||||| ||||||||||||||||||||||| ||||||||  |||||||| ||||| |||||||||||||    
T  52839461 cgagttagaagggtgattttgggtcaaaaattgaccctaaatcacccctctttaatggatgaaagagaacaaactagagtttt 52839379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 44514078 - 44514158
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagtttttgtgacggct 268  Q
    |||||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||| ||| ||| ||||| |||||||||    
T  44514078 gtgattttgggtcaaaaattgaccctaaatcacccctctttagtggatgaaggtgaagaaattagggttttggtgacggct 44514158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 193 - 270
Target Start/End: Original strand, 22032182 - 22032260
Alignment:
Q  193 ttttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagtttttgtgacggctca 270  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||| |  ||||| ||  |||||||||||||||||    
T  22032182 ttttgggtcaaaaattgaccctaaatcatccctctttggtggatgaagaaataaaaattaaggtttttgtgacggctca 22032260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 6212962 - 6213038
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactag 252  Q
    ||||||||| | |||||||| ||||||||||||||| ||||||| ||||||||| |||| ||||||||| |||||||    
T  6212962 cgagttagaggtgtgattttgggtcaaaaattgaccataaatcacccctctttgatggacgaaggagaagaaactag 6213038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 33703597 - 33703661
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactag 252  Q
    |||||||| ||| ||||||||||| ||||||| |||||||| |||||||||||||||||||||||    
T  33703597 gtgattttgggtaaaaaattgaccataaatcatccctctttagtggatgaaggagaaaaaactag 33703661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 290
Target Start/End: Complemental strand, 26199590 - 26199521
Alignment:
Q  221 ccctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggggaagaga 290  Q
    |||||||||||||||||||||||| ||||||   |||| |||||| |||| ||||||||||| |||||||    
T  26199590 ccctctttggtggatgaaggagaagaaactaagattttagtgacgactcacaagagagaaggagaagaga 26199521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 280
Target Start/End: Original strand, 27469821 - 27469912
Alignment:
Q  190 tgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaa 280  Q
    ||||||| | || |||||||||| |||||||||| |||||  ||||||||| |||| |||||||| |||| ||||||||||| |||| ||||    
T  27469821 tgattttggttcgaaaattgaccttaaatcacccctctttaatggatgaagaagaagaaactagaattttggtgacggctcacaagaaagaa 27469912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 630861 - 630907
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc 223  Q
    ||||||||||| |||||||  ||||||||||||||||||||||||||    
T  630861 cgagttagatgggtgatttagggtcaaaaattgaccctaaatcaccc 630907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 44562825 - 44562871
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc 223  Q
    ||||||||| | |||||||| ||||||||||||||||||||||||||    
T  44562825 cgagttagaggggtgattttgggtcaaaaattgaccctaaatcaccc 44562871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 900129 - 900059
Alignment:
Q  221 ccctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggggaagagag 291  Q
    |||| |||||||||| ||||||| |||| ||  ||||| ||||||||||| ||||||||| | ||||||||    
T  900129 ccctttttggtggataaaggagataaaattaaggttttggtgacggctcacaagagagaaagagaagagag 900059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 280
Target Start/End: Complemental strand, 4564539 - 4564485
Alignment:
Q  226 tttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaa 280  Q
    ||||||||||||||||||| ||||||| |||| ||||||| |||| | |||||||    
T  4564539 tttggtggatgaaggagaagaaactagggtttgtgtgacgactcacaggagagaa 4564485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 5832271 - 5832225
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc 223  Q
    ||||||||| | |||||||  ||||||||||||||||||||||||||    
T  5832271 cgagttagaggggtgatttagggtcaaaaattgaccctaaatcaccc 5832225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 13691846 - 13691903
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatca--ccctctttggtggatgaaggagaa 244  Q
    |||||||| |||||||||||||||||||| ||  |||||||| |||||||||| ||||    
T  13691846 gtgattttgggtcaaaaattgaccctaaaccaccccctctttagtggatgaagaagaa 13691903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 278
Target Start/End: Complemental strand, 46589202 - 46589109
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatca-ccctctttggt--ggatgaaggagaa-aaaactagagtttttgtgacggctcataagagag 278  Q
    ||||||||  |||||||||||| | ||||||| |||||||||||  ||||||||||||| |||| |||  |||| ||||||||||| |||||||    
T  46589202 gtgattttgagtcaaaaattgatcataaatcacccctctttggtggggatgaaggagaagaaaattaggtttttggtgacggctcacaagagag 46589109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 52839559 - 52839497
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaa 238  Q
    ||||||||| | |||||||| ||||||||||||| | ||||||| ||||||||| ||||||||    
T  52839559 cgagttagaagggtgattttgggtcaaaaattgatcataaatcacccctctttgatggatgaa 52839497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 33125903 - 33125943
Alignment:
Q  181 ttagatgagtgattttaggtcaaaaattgaccctaaatcacc 222  Q
    |||||||||||||||| |||| ||||||||||||||||||||    
T  33125903 ttagatgagtgattttgggtc-aaaattgaccctaaatcacc 33125943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 15276558 - 15276610
Alignment:
Q  227 ttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagaga 279  Q
    |||||||||||||||||| ||||||  ||||| ||||||||||| || |||||    
T  15276558 ttggtggatgaaggagaataaactatggttttggtgacggctcacaaaagaga 15276610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 40646604 - 40646564
Alignment:
Q  183 agatgagtgattttaggtcaaaaattgaccctaaatcaccc 223  Q
    ||||||||||||||||||||| ||||||||| ||| |||||    
T  40646604 agatgagtgattttaggtcaagaattgacccaaaaccaccc 40646564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 179 - 280
Target Start/End: Complemental strand, 49166963 - 49166861
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagaga 277  Q
    ||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||| |||||||||||| | ||||    
T  49166963 agttagaggggtgattttaggtcaaaaattgaccctaaatcacccatctttggtggatgaaggagaagaaactagggtttgtgtgacggctcacaggaga 49166864  T
Q  278 gaa 280  Q
    |||    
T  49166863 gaa 49166861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 177 - 280
Target Start/End: Complemental strand, 24470433 - 24470329
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    ||||||||| | |||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||| |||| |||||||||||||| ||    
T  24470433 cgagttagaggggtgattttgggtcaaaaattgcccctaaatcacccctctttggtggatgaaggagaagaaactagggtttgtgtgacggctcatagga 24470334  T
Q  276 gagaa 280  Q
    |||||    
T  24470333 gagaa 24470329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 177 - 280
Target Start/End: Complemental strand, 24475381 - 24475277
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    ||||||||| | |||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||| |||| |||||||||||||| ||    
T  24475381 cgagttagaggggtgattttgggtcaaaaattgcccctaaatcacccctctttggtggatgaaggagaagaaactagggtttgtgtgacggctcatagga 24475282  T
Q  276 gagaa 280  Q
    |||||    
T  24475281 gagaa 24475277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 178 - 286
Target Start/End: Original strand, 35141830 - 35141939
Alignment:
Q  178 gagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagag 276  Q
    |||||||| | |||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||   |||| ||||||||||| |||||    
T  35141830 gagttagaagggtgatttttggtcaaaaattgaccctaaatcacccttctttggtgaatgaaggagaataaactatgattttggtgacggctcacaagag 35141929  T
Q  277 agaaggggaa 286  Q
    | || |||||    
T  35141930 aaaaagggaa 35141939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 189 - 291
Target Start/End: Complemental strand, 40775293 - 40775190
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggggaag 287  Q
    |||||||| | |||||||||||||||||||||||| |||||| |||||||||||||| ||| ||| ||||| |||||| |||| ||||||||| |||||     
T  40775293 gtgattttggatcaaaaattgaccctaaatcacccctctttgatggatgaaggagaagaaattagggttttggtgacgactcacaagagagaaagggaaa 40775194  T
Q  288 agag 291  Q
    ||||    
T  40775193 agag 40775190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 189 - 270
Target Start/End: Complemental strand, 47749760 - 47749678
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctca 270  Q
    |||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||| ||| ||| ||||| |||||||||||    
T  47749760 gtgattttgggtcaaaaattgaccataaatcacccctctttggtggatgaaggagaagaaattagggttttcgtgacggctca 47749678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 179 - 279
Target Start/End: Complemental strand, 28015392 - 28015291
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagaga 277  Q
    ||||||| | |||||||| | ||||||||||||||||||||| |||||||| ||||||||||| ||||||| ||| ||||| ||| ||||||  ||||||    
T  28015392 agttagaggggtgattttggatcaaaaattgaccctaaatcacccctctttagtggatgaaggtgaaaaaattagggttttggtggcggctcccaagaga 28015293  T
Q  278 ga 279  Q
    ||    
T  28015292 ga 28015291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 280
Target Start/End: Original strand, 8611698 - 8611802
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    ||||||||| | ||||| || |||||||||  ||||||||||||||| ||||| ||||||||||||||| ||||||| |||| ||||||| |||| | ||    
T  8611698 cgagttagaggggtgatattgggtcaaaaagagaccctaaatcacccctctttcgtggatgaaggagaagaaactagggtttgtgtgacgactcacagga 8611797  T
Q  276 gagaa 280  Q
    |||||    
T  8611798 gagaa 8611802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 270
Target Start/End: Original strand, 23177659 - 23177752
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaa-ttgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctca 270  Q
    ||||||| |||||||||| ||| ||||| |||||| |||||||| | |||||  |||||||||||||| |||||||||||||||||||| ||||    
T  23177659 agttagaggagtgattttgggtaaaaaaattgaccttaaatcactcatctttaatggatgaaggagaagaaactagagtttttgtgacgtctca 23177752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 35135259 - 35135347
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcac-cctctttggtggatgaaggagaaaaaactagagtttttgtgac 264  Q
    |||| |||| ||| ||||||||||||||||||||| ||||||||| |||||| | |||||||||||||| || |||| ||||| |||||    
T  35135259 cgagctagaagagcgattttaggtcaaaaattgactctaaatcactcctcttagatggatgaaggagaataatctagggttttggtgac 35135347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 258
Target Start/End: Complemental strand, 8319352 - 8319269
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcac-cctctttggtggatgaaggagaa-aaaactagagtttt 258  Q
    ||||||| ||| |||||||| |||||||| |||||| |||||||| |||||||||||||| |||||||| |||||||| |||||    
T  8319352 cgagttacatgggtgattttgggtcaaaagttgaccataaatcactcctctttggtggataaaggagaagaaaactagggtttt 8319269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 251
Target Start/End: Original strand, 25855296 - 25855375
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-----tctttggtggatgaaggagaaaaaacta 251  Q
    ||||||||| |  ||||||| | ||||||||||||||||||||||||     ||||||||||||||||||||||||||||    
T  25855296 cgagttagagggatgattttggatcaaaaattgaccctaaatcacccacccctctttggtggatgaaggagaaaaaacta 25855375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 202 - 279
Target Start/End: Complemental strand, 37399629 - 37399551
Alignment:
Q  202 aaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagaga 279  Q
    ||||||| |||||||||||||| |||||||||||||||| |||| ||| ||| ||||  ||||||||||| ||||||||    
T  37399629 aaaaattaaccctaaatcacccgtctttggtggatgaagaagaagaaattagggtttgcgtgacggctcacaagagaga 37399551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 14734138 - 14734207
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagttt 257  Q
    |||||||  |||||||||||||||||||| ||||| |||||| ||||||||| |||||||| ||||||||    
T  14734138 gtgatttggggtcaaaaattgaccctaaaccacccttctttgatggatgaagaagaaaaaattagagttt 14734207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 285
Target Start/End: Original strand, 23732469 - 23732578
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    |||||||||  |||||||||  |||||||||||||| ||||||| ||||||||| || ||||||  ||| |||  || ||||| ||||||||||| ||||    
T  23732469 cgagttagagaagtgattttgagtcaaaaattgaccttaaatcacccctctttgatgaatgaagttgaagaaatgagggttttggtgacggctcacaaga 23732568  T
Q  276 gagaagggga 285  Q
    ||||| ||||    
T  23732569 gagaaaggga 23732578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 291
Target Start/End: Original strand, 33530569 - 33530657
Alignment:
Q  204 aaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggggaagagag 291  Q
    |||||||||||||||||||| |||||| | ||||||| | || ||||||  ||||| |||| |||||| ||||||||||| ||||||||    
T  33530569 aaattgaccctaaatcacccctctttgatagatgaagtaaaagaaactatggttttggtgatggctcacaagagagaaggagaagagag 33530657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 291
Target Start/End: Original strand, 41748581 - 41748690
Alignment:
Q  181 ttagatgagtgattttaggtcaaaaattgaccctaaatcac-cctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagaga 279  Q
    ||||| |||||||||| | ||||||||||||| ||||||||  |||||| ||| ||||||  ||| ||||||||||| | ||||||||||  |||||| |    
T  41748581 ttagaggagtgattttggatcaaaaattgaccgtaaatcacatctctttagtgaatgaagatgaagaaactagagttctcgtgacggctc--aagagaaa 41748678  T
Q  280 aggggaagagag 291  Q
    || |||||||||    
T  41748679 agaggaagagag 41748690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 280
Target Start/End: Original strand, 10250569 - 10250660
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatcaccctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaa 280  Q
    |||||||| | || ||||||||||||  |||||||| ||| |||||||||| |||| ||| ||  ||||| ||||||||| | |||||||||    
T  10250569 gtgattttggatcgaaaattgaccctttatcaccctttttagtggatgaagaagaataaattaaggttttggtgacggctaacaagagagaa 10250660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 291
Target Start/End: Complemental strand, 11001850 - 11001784
Alignment:
Q  224 tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggggaagagag 291  Q
    |||||||||||||||| |||||||| ||| | |||||||||| |||| ||||||||| || |||||||    
T  11001850 tctttggtggatgaagaagaaaaaattag-gattttgtgacgactcacaagagagaaaggaaagagag 11001784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 44681488 - 44681453
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatcaccct 224  Q
    |||||||||||||||||||||| |||||||||||||    
T  44681488 gtgattttaggtcaaaaattgaacctaaatcaccct 44681453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 29804764 - 29804814
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaa 238  Q
    |||||||  |||||||||||||||||||| || ||||||||||||||||||    
T  29804764 gtgatttggggtcaaaaattgaccctaaaccacccctctttggtggatgaa 29804814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 266
Target Start/End: Original strand, 5025134 - 5025223
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaa-ttgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacgg 266  Q
    ||||||| | |||||||| ||||||||| ||||| | ||||||||| ||| ||||||||||||  ||| ||||||| ||||| |||||||    
T  5025134 agttagaggggtgattttgggtcaaaaaattgactcaaaatcacccctctctggtggatgaagatgaagaaactagggttttggtgacgg 5025223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 24045311 - 24045380
Alignment:
Q  180 gttagatgagtgattttaggtcaaaaattgaccctaaatcacc-ctctttggtggatgaaggagaaaaaa 248  Q
    |||||| | |||||||| ||||||||||||||| ||||||||| ||||||| |||||  || ||||||||    
T  24045311 gttagacgggtgattttgggtcaaaaattgaccttaaatcaccactctttgatggattcagaagaaaaaa 24045380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 254
Target Start/End: Complemental strand, 47156434 - 47156357
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccctctttggtggatgaaggagaaaaaactagag 254  Q
    ||||||||| |  ||||||| | ||||||||||||| |||||||||||| || |   ||||||||||| |||||||||    
T  47156434 cgagttagagggatgattttggatcaaaaattgaccttaaatcaccctccttagcaaatgaaggagaagaaactagag 47156357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 35661526 - 35661470
Alignment:
Q  221 ccctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagaga 277  Q
    ||||||||| |||||||||||||| |||||||  | || ||||||||||| ||||||    
T  35661526 ccctctttgatggatgaaggagaagaaactaggatattggtgacggctcacaagaga 35661470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 177 - 280
Target Start/End: Original strand, 54420788 - 54420892
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||  |||||||||||| | ||    
T  54420788 cgagttagaggagtgattttgggtcaaaaattgaccctaaatcacccatctttggtggatgaaggagaagaaactagggttcgtgtgacggctcacagga 54420887  T
Q  276 gagaa 280  Q
    |||||    
T  54420888 gagaa 54420892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 177 - 288
Target Start/End: Complemental strand, 28588599 - 28588487
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    ||||||||| | |||||||| |||||||||||||||||||||||||| ||| || |||||||||||||| |||||||  |||| ||||||||||| || |    
T  28588599 cgagttagaggggtgattttgggtcaaaaattgaccctaaatcacccttctatgatggatgaaggagaagaaactaggattttggtgacggctcacaaaa 28588500  T
Q  276 gagaaggggaaga 288  Q
    |||||||||||||    
T  28588499 gagaaggggaaga 28588487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 189 - 283
Target Start/End: Original strand, 1657658 - 1657753
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatcacc-ctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggg 283  Q
    |||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||| ||||| |||||| |||| ||||||||||||    
T  1657658 gtgattttgggtcaaaaattgaccctaaatcacctctctttgatggatgaaggagaagaaactagggttttagtgacgtctcacaagagagaaggg 1657753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 179 - 281
Target Start/End: Complemental strand, 9661889 - 9661786
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagaga 277  Q
    ||||||| | |||||||| |||||||||||||||||||||||||| |||||| |||||||||||||| ||||||| ||||| |||||||||||  |||||    
T  9661889 agttagaggggtgattttgggtcaaaaattgaccctaaatcacccctctttgatggatgaaggagaagaaactagggttttggtgacggctcactagaga 9661790  T
Q  278 gaag 281  Q
    ||||    
T  9661789 gaag 9661786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 177 - 268
Target Start/End: Complemental strand, 16991910 - 16991818
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcacc-ctctttggtggatgaaggagaaaaaactagagtttttgtgacggct 268  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||| ||||| || ||||||    
T  16991910 cgagttagatgggtgattttgggtcaaaaattgaccctaaatcaccgctctttgatggatgaaggagaagaaactagggttttggtaacggct 16991818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 189 - 283
Target Start/End: Original strand, 46729007 - 46729104
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctc--ataagagagaaggg 283  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||  |||||||||  | ||||||||||||    
T  46729007 gtgattttgggtcaaaaattgaccctaaatcacccctctttggtggatgaaagtgaaaaaactagagttttgatgacggctccaaaaagagagaaggg 46729104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 177 - 280
Target Start/End: Complemental strand, 3169078 - 3168974
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcacc-ctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    ||||||||| | |||||||| |||||| ||||||| |||||||||| |||||||||| |||||| |||||||||||||||||| || |||||| | ||||    
T  3169078 cgagttagaggggtgattttgggtcaataattgactctaaatcacctctctttggtgaatgaagaagaaaaaactagagttttagtcacggcttaaaaga 3168979  T
Q  276 gagaa 280  Q
    |||||    
T  3168978 gagaa 3168974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 179 - 269
Target Start/End: Complemental strand, 4634319 - 4634228
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctc 269  Q
    ||||||| | |||||||| ||||||||||||||| |||||||||| |||||| |||||||||||||| ||||||| ||||| ||||||||||    
T  4634319 agttagaggggtgattttgggtcaaaaattgaccttaaatcacccctctttgatggatgaaggagaagaaactagggttttggtgacggctc 4634228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 177 - 280
Target Start/End: Original strand, 1646017 - 1646121
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcacc-ctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    ||||||||| | |||||||| |||||| |||| ||||||||||| | |||||||||| |||||| |||| ||||||| ||||| ||||||||||| ||||    
T  1646017 cgagttagaggggtgattttgggtcaacaattaaccctaaatcatctctctttggtgaatgaagaagaagaaactagggttttagtgacggctcaaaaga 1646116  T
Q  276 gagaa 280  Q
    |||||    
T  1646117 gagaa 1646121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 43156812 - 43156713
Alignment:
Q  180 gttagatgagtgattttaggtcaaaaattgaccc-taaatcaccc-tctttggtggatgaaggagaa-aaaactagagtttttgtgacggctcataagag 276  Q
    |||||| | |||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||| |||||| ||||||||||| |||||    
T  43156812 gttagaggggtgattttgggtcaaaaattgacccgtaaatcacccctctttggtggatgaaggagaagaaaacta-agttttggtgacggctcacaagag 43156714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 9474630 - 9474700
Alignment:
Q  221 ccctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggggaagagag 291  Q
    ||||||||||| |||||||||||| ||||||| ||||| ||||||||||| ||||||||||||||| ||||    
T  9474630 ccctctttggttgatgaaggagaagaaactagggttttggtgacggctcacaagagagaaggggaaaagag 9474700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 189 - 279
Target Start/End: Complemental strand, 6408466 - 6408374
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatcacc--ctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagaga 279  Q
    |||||||| ||| ||||||||||||| |||||||  |||||||||||||||||||||| |||||||||| ||  ||||| |||| ||||||||    
T  6408466 gtgattttgggtaaaaaattgacccttaatcacctcctctttggtggatgaaggagaagaaactagagtattgatgacgactcacaagagaga 6408374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 205 - 291
Target Start/End: Original strand, 37869520 - 37869607
Alignment:
Q  205 aattgaccctaaatcacc-ctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggggaagagag 291  Q
    |||||||||||||||||  ||||||  |||||||||||||| ||||||| ||||| ||||||||||| ||||||||| ||||| ||||    
T  37869520 aattgaccctaaatcacatctctttaatggatgaaggagaagaaactagggttttggtgacggctcacaagagagaaagggaaaagag 37869607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 42972074 - 42972029
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaattgaccctaaatcaccct 224  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  42972074 agttagatgagtgattttgggtcaaaaattgaccctaaatcaccct 42972029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 223 - 291
Target Start/End: Complemental strand, 38434612 - 38434544
Alignment:
Q  223 ctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggggaagagag 291  Q
    ||||||||||||||||||| |||||| |||  |||| ||||||||||| |||||| |||||||||||||    
T  38434612 ctctttggtggatgaaggataaaaaattaggattttggtgacggctcacaagagataaggggaagagag 38434544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 14542601 - 14542656
Alignment:
Q  190 tgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaa 244  Q
    ||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  14542601 tgattttgggtcaaaaattgaccctaaatcacccctctttgatggatgaaggagaa 14542656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 191 - 276
Target Start/End: Original strand, 6789949 - 6790034
Alignment:
Q  191 gattttaggtcaaaaattgaccctaaatcaccctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagag 276  Q
    ||||||| ||||||||||||| |||||||||||| ||| ||  ||||| ||||| |||||||| ||||| | |||||||| |||||    
T  6789949 gattttaagtcaaaaattgactctaaatcaccctttttagtatatgaaagagaagaaactagatttttttttacggctcacaagag 6790034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 291
Target Start/End: Original strand, 30416700 - 30416812
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagaga 277  Q
    ||||||| | |||||||| | ||||||||||||| ||||| | |||| ||||||||||||||  ||| |||||||| |||| || |||||||  || |||    
T  30416700 agttagaggtgtgattttggttcaaaaattgaccataaattacccctttttggtggatgaagatgaagaaactagaattttggtaacggctc-caaaaga 30416798  T
Q  278 gaaggggaagagag 291  Q
    ||||||||||||||    
T  30416799 gaaggggaagagag 30416812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 290
Target Start/End: Original strand, 29577183 - 29577275
Alignment:
Q  199 gtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggggaagaga 290  Q
    |||||||| |||||||||||||||| | |||  ||||||||||| || ||| |||  |||| ||||||||||| ||||||||||| |||||||    
T  29577183 gtcaaaaagtgaccctaaatcaccccttttttatggatgaaggaaaataaattaggattttggtgacggctcacaagagagaaggagaagaga 29577275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 264
Target Start/End: Complemental strand, 51646119 - 51646043
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagtttttgtgac 264  Q
    |||||||||||| ||||||||||| ||||||| | ||||||| |||||||||| ||| ||| ||| |||||||||||    
T  51646119 gtgattttaggttaaaaattgaccataaatcatctctctttgatggatgaaggtgaagaaagtagggtttttgtgac 51646043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 35338420 - 35338361
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatcaccctctttggtggatgaaggagaaaaaa 248  Q
    |||||||  |||||||| |||||||||||||| | |||||||| ||||||||||||||||    
T  35338420 gtgatttagggtcaaaatttgaccctaaatcatcatctttggtagatgaaggagaaaaaa 35338361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 289
Target Start/End: Complemental strand, 40859669 - 40859587
Alignment:
Q  207 ttgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggggaagag 289  Q
    ||||||||||||||||| ||||||||||||||||  ||| ||||||| ||||| |||||||||   ||||||||||| ||||||    
T  40859669 ttgaccctaaatcacccctctttggtggatgaagacgaagaaactagggttttggtgacggct-tcaagagagaaggagaagag 40859587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 3673649 - 3673580
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagttt 257  Q
    |||||||  ||||||||||||||||||||||| ||||||||||||||| || ||||| ||| ||| ||||    
T  3673649 gtgatttggggtcaaaaattgaccctaaatcacccctctttggtggataaatgagaagaaagtagggttt 3673580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 279
Target Start/End: Original strand, 7242857 - 7242945
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatc-accctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagaga 279  Q
    |||||||| ||||||||||||||||||||||  |||| |||||||||| |   |||| ||||||| ||||| |||| |||||| ||||||||    
T  7242857 gtgattttgggtcaaaaattgaccctaaatcgcccctttttggtggataa---agaagaaactagggttttggtgatggctcacaagagaga 7242945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 4959664 - 4959712
Alignment:
Q  190 tgattttaggtcaaaaattgaccctaaatcaccctctttggtggatgaa 238  Q
    ||||||| | |||||||||||||||||||||||||| ||| ||||||||    
T  4959664 tgattttggatcaaaaattgaccctaaatcaccctcgttgatggatgaa 4959712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 279
Target Start/End: Complemental strand, 9549483 - 9549412
Alignment:
Q  209 gaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagaga 279  Q
    |||| |||||||||| | ||||||||||||| ||||| ||||||  |||||  |||||||||||||||||||    
T  9549483 gaccttaaatcacccctatttggtggatgaatgagaagaaactaaggttttgatgacggctcataagagaga 9549412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 23067924 - 23067970
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc 223  Q
    ||||||||| | |||||||  ||||||||||||||||||||||||||    
T  23067924 cgagttagaggggtgatttagggtcaaaaattgaccctaaatcaccc 23067970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 265
Target Start/End: Original strand, 4622799 - 4622875
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagtttttgtgacg 265  Q
    |||||||| | ||||||||||||| ||||||| ||||||||  | ||||||| |||| ||||||||||||| ||||||    
T  4622799 gtgattttggatcaaaaattgaccttaaatcacccctcttt-attgatgaagaagaagaaactagagttttggtgacg 4622875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 33021014 - 33021083
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagttt 257  Q
    |||||||  |||||||| ||||||| ||| ||||| |||||||||||||||||||| |||| ||| ||||    
T  33021014 gtgatttggggtcaaaatttgacccaaaaccacccctctttggtggatgaaggagataaaattagggttt 33021083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 1124973 - 1124929
Alignment:
Q  178 gagttagatgagtgattttaggtcaaaaattgaccctaaatcacc 222  Q
    ||||||||||| ||||||| |||||||||||||  ||||||||||    
T  1124973 gagttagatgaatgattttgggtcaaaaattgattctaaatcacc 1124929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 34115740 - 34115796
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaa 244  Q
    |||||||| ||||||||||||||||||||| | | ||||||||| |||||| |||||    
T  34115740 gtgattttgggtcaaaaattgaccctaaattatctctctttggtagatgaatgagaa 34115796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 291
Target Start/End: Original strand, 38546188 - 38546301
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    ||||||||| | |||||||| |||||||  |||||| |||||| ||| |||||| | ||||| ||| || |||||||  |||| |||| | |||| ||||    
T  38546188 cgagttagaggggtgattttgggtcaaa--ttgaccttaaatctcccctctttgatagatgacggaaaagaaactaggattttggtgatgactcacaaga 38546285  T
Q  276 gagaaggggaagagag 291  Q
    ||||||| ||||||||    
T  38546286 gagaaggagaagagag 38546301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 188 - 290
Target Start/End: Complemental strand, 37719878 - 37719775
Alignment:
Q  188 agtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggggaa 286  Q
    ||||||||||| |||||||||||||||||||||||| || |||||||||||||||||| ||||||| ||||| | ||||||||| |||||| ||||||||    
T  37719878 agtgattttagttcaaaaattgaccctaaatcacccgtccttggtggatgaaggagaagaaactagggttttagagacggctcacaagagaaaaggggaa 37719779  T
Q  287 gaga 290  Q
    ||||    
T  37719778 gaga 37719775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 177 - 277
Target Start/End: Complemental strand, 9270059 - 9269958
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    ||||||||| | |||||||| ||||||||||||| | |||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||    
T  9270059 cgagttagaggggtgattttgggtcaaaaattgatcataaatcacccctctttggtggatgaaggagaagaaactagagttttcgtgacggctcacaaga 9269960  T
Q  276 ga 277  Q
    ||    
T  9269959 ga 9269958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 189 - 281
Target Start/End: Complemental strand, 23766768 - 23766675
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatcacc-ctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaag 281  Q
    |||||||| ||||||||||||||| ||||||||  ||||||||||||||||| |||| |||||||||||||||||||| |||| ||||||||||    
T  23766768 gtgattttgggtcaaaaattgaccttaaatcacatctctttggtggatgaagtagaagaaactagagtttttgtgacgactcacaagagagaag 23766675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 190 - 291
Target Start/End: Original strand, 16937428 - 16937532
Alignment:
Q  190 tgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggct--cataagagagaaggggaa 286  Q
    ||||||| | |||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| |||||  ||||||||  || |||||||||||||||    
T  16937428 tgattttggatcaaaaattgaccctaaatcacccctctttggtggatgaaggtgaagaaactagggttttgatgacggctcccagaagagagaaggggaa 16937527  T
Q  287 gagag 291  Q
    |||||    
T  16937528 gagag 16937532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 190 - 291
Target Start/End: Original strand, 14115882 - 14115983
Alignment:
Q  190 tgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggggaaga 288  Q
    ||||||| ||||||||||||||| |||||||||| ||||||||||||||| |||||  |||||||||||  ||||||||||| ||||||||| ||||| |    
T  14115882 tgattttgggtcaaaaattgacc-taaatcacccatctttggtggatgaaagagaagtaactagagtttaggtgacggctcacaagagagaaagggaaaa 14115980  T
Q  289 gag 291  Q
    |||    
T  14115981 gag 14115983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 31874122 - 31874029
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcacc-ctctttggtggatgaaggagaaaaaactagagtttttgtgacggctca 270  Q
    ||||||||| | |||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||| | ||| |||||||||||    
T  31874122 cgagttagaggggtgattttgggtcaaaaattgaccctaaatcacctctctttgatggatgaaggagaagaaactag-ggtttggtgacggctca 31874029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 179 - 291
Target Start/End: Complemental strand, 15665575 - 15665460
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggct--cataaga 275  Q
    ||||||| | ||||||||  ||||||| ||||||||||||||||| |||||| ||||||||||  || ||||||||||||| |||||||||  || ||||    
T  15665575 agttagaggggtgattttgtgtcaaaagttgaccctaaatcacccctctttgttggatgaagggaaagaaactagagttttggtgacggcttacacaaga 15665476  T
Q  276 gagaaggggaagagag 291  Q
    ||||||| ||||||||    
T  15665475 gagaaggagaagagag 15665460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 190 - 291
Target Start/End: Complemental strand, 44295341 - 44295232
Alignment:
Q  190 tgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaag-------gagaaaaaactagagtttttgtgacggctcataagagagaag 281  Q
    ||||||| ||||||||||||||||||||||| ||||||||| |||||||||       ||||| ||||||| ||||| |||||||||||  |||||||||    
T  44295341 tgattttgggtcaaaaattgaccctaaatcacccctctttgatggatgaaggagaagagagaagaaactagggttttggtgacggctcactagagagaag 44295242  T
Q  282 gggaagagag 291  Q
    ||||||||||    
T  44295241 gggaagagag 44295232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 177 - 258
Target Start/End: Complemental strand, 10042799 - 10042717
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagtttt 258  Q
    ||||||||| | |||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||  |||||| |||||    
T  10042799 cgagttagaggggtgattttgggtcaaaaattgaccataaatcacccctctttggtggatgaaggagaatgaactagggtttt 10042717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 202 - 289
Target Start/End: Original strand, 32256823 - 32256910
Alignment:
Q  202 aaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggggaagag 289  Q
    |||||||||||||||||||||| ||||||||||||||||  |||||||||||  ||||  |||||||||  ||||||||||||||||||    
T  32256823 aaaaattgaccctaaatcacccctctttggtggatgaagatgaaaaaactaggattttgatgacggctc-caagagagaaggggaagag 32256910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 189 - 285
Target Start/End: Complemental strand, 37658992 - 37658893
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagtttttgtgacggctc--ataagagagaagggga 285  Q
    ||||||||  |||||||||||||||||||||| |||||||||||||||||| | ||||||| ||| ||||| |||| |||||  | ||||||||||||||    
T  37658992 gtgattttgtgtcaaaaattgaccctaaatcacccctctttggtggatgaaagtgaaaaaattagggttttggtgatggctccaaaaagagagaagggga 37658893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 177 - 291
Target Start/End: Original strand, 36545857 - 36545971
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    ||||||||| | ||||| || ||||| ||||||||| ||||||| |||||||||||||||||||||||| |||||||  |||  ||||||| ||| ||||    
T  36545857 cgagttagaggggtgatattgggtcacaaattgaccttaaatcatccctctttggtggatgaaggagaagaaactaggatttcagtgacgg-tcacaaga 36545955  T
Q  276 gagaaggggaagagag 291  Q
    ||||| ||||| ||||    
T  36545956 gagaaagggaaaagag 36545971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 177 - 286
Target Start/End: Complemental strand, 9992703 - 9992593
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccctctt-tggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    ||||||||| | |||||||| |||||||||||||||||||||||||| | | |  || ||||||||||| ||| ||  || || ||||||||||| ||||    
T  9992703 cgagttagaggggtgattttgggtcaaaaattgaccctaaatcacccccctctaatgaatgaaggagaagaaattatggtcttggtgacggctcacaaga 9992604  T
Q  276 gagaaggggaa 286  Q
    ||||| |||||    
T  9992603 gagaaagggaa 9992593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 31713135 - 31713220
Alignment:
Q  201 caaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggggaa 286  Q
    ||||| ||||||||||||||||| |||||| ||| |||||| ||| ||||||||||||| ||||||||||  ||||| |||||||||    
T  31713135 caaaagttgaccctaaatcacccctctttgatgggtgaaggtgaagaaactagagttttggtgacggctc-caagagggaaggggaa 31713220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 37129761 - 37129837
Alignment:
Q  204 aaattgaccctaaatcac-cctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaa 280  Q
    |||||||||| ||||||| |||| |||||||||||||||||| ||||||| | |||||||||| |||| |||||||||    
T  37129761 aaattgacccaaaatcacacctccttggtggatgaaggagaataaactag-ggttttgtgacgcctcacaagagagaa 37129837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 198 - 257
Target Start/End: Complemental strand, 14327496 - 14327436
Alignment:
Q  198 ggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagttt 257  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||| ||| ||| ||||    
T  14327496 ggtcaaaaattgaccctaaaccacccctctttggtggatgaaggagaagaaattagcgttt 14327436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 18190942 - 18190984
Alignment:
Q  199 gtcaaaaattgaccctaaatcaccctctttggtggatgaagga 241  Q
    ||||||||||||||||||| |||||||||| ||||||||||||    
T  18190942 gtcaaaaattgaccctaaaccaccctctttagtggatgaagga 18190984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 32061820 - 32061751
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagttt 257  Q
    |||||||  ||||||||||||||||||||  |||| ||||||||||||||||||||| ||| ||| ||||    
T  32061820 gtgatttggggtcaaaaattgaccctaaactacccctctttggtggatgaaggagaagaaattagggttt 32061751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 280
Target Start/End: Original strand, 7281203 - 7281307
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcacc-ctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    ||||||||||| |||||||  ||| ||||| |||| ||||| |||| ||  ||| | ||||| |||||| ||||||||||||| ||||||||||| ||||    
T  7281203 cgagttagatgggtgatttagggttaaaaactgactctaaaacacctctacttgatagatgagggagaagaaactagagttttggtgacggctcacaaga 7281302  T
Q  276 gagaa 280  Q
     ||||    
T  7281303 aagaa 7281307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 31147881 - 31147945
Alignment:
Q  182 tagatgagtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaa 245  Q
    ||||||||  ||||| ||||||||||||||||||||||| || |||||| || ||||||||||||    
T  31147881 tagatgagcaattttgggtcaaaaattgaccctaaatcatccttctttgatgaatgaaggagaaa 31147945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 3680934 - 3680883
Alignment:
Q  202 aaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactag 252  Q
    |||||||||| ||||||||||| ||||||||||||||| ||||| |||||||    
T  3680934 aaaaattgactctaaatcacccctctttggtggatgaaagagaagaaactag 3680883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 8073522 - 8073471
Alignment:
Q  202 aaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactag 252  Q
    ||||||||||| |||| ||||| | |||||||||||||||||||||||||||    
T  8073522 aaaaattgaccataaaccacccatttttggtggatgaaggagaaaaaactag 8073471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 35580377 - 35580334
Alignment:
Q  183 agatgagtgattttaggtcaaaaattgaccctaaatcaccctct 226  Q
    ||||||||||||||| ||||||||||||||| ||| ||||||||    
T  35580377 agatgagtgattttatgtcaaaaattgacccaaaaccaccctct 35580334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 3925758 - 3925803
Alignment:
Q  244 aaaaactagagtttttgtgacggctcataagagagaaggggaagag 289  Q
    ||||||||| ||||||||||||||||  |||||||||| |||||||    
T  3925758 aaaaactagggtttttgtgacggctcccaagagagaagaggaagag 3925803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 28298824 - 28298901
Alignment:
Q  181 ttagatgagtgattttaggtcaaaaattgaccctaaatcaccctctttggtggatgaaggagaaaaaactagagtttt 258  Q
    ||||| || ||||||  |||||||| || |||||||||||||||||||   | ||||||||||| |||||| ||||||    
T  28298824 ttagaggaatgatttgtggtcaaaatttaaccctaaatcaccctctttaaagaatgaaggagaacaaactatagtttt 28298901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 16996988 - 16997040
Alignment:
Q  228 tggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaa 280  Q
    ||||||||||||||||| ||||||||| || ||||||| |||| | |||||||    
T  16996988 tggtggatgaaggagaagaaactagagcttgtgtgacgactcacaggagagaa 16997040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 18890908 - 18890948
Alignment:
Q  183 agatgagtgattttaggtcaaaaattgaccctaaatcaccc 223  Q
    |||||||||||| |||||||||||||||||  |||||||||    
T  18890908 agatgagtgattctaggtcaaaaattgacctaaaatcaccc 18890948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 26937563 - 26937487
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactag 252  Q
    ||||||||| | ||||||||  ||||||| || ||||||||| |||| ||||||||||||| |||| || |||||||    
T  26937563 cgagttagaggggtgattttgagtcaaaacttaaccctaaataacccctctttggtggatgcaggataagaaactag 26937487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 44577951 - 44577915
Alignment:
Q  187 gagtgattttaggtcaaaaattgaccctaaatcaccc 223  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  44577951 gagtgattttaggtcaaaaattgacccaaaaccaccc 44577915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 177 - 279
Target Start/End: Complemental strand, 16913366 - 16913263
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    ||||||||| | |||||||  |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||||||||| || |    
T  16913366 cgagttagaggggtgatttcgggtcaaaaattgaccctaaatcacccctctttggtggatgaaggagaagaaactagggttttggtgacggctcacaaaa 16913267  T
Q  276 gaga 279  Q
    ||||    
T  16913266 gaga 16913263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 189 - 280
Target Start/End: Complemental strand, 7049273 - 7049181
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaa 280  Q
    ||||||||  ||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||  ||||| ||||||||||| |||||||||    
T  7049273 gtgattttgagtcaaaagttgaccctaaatcacccctctttggtggatgaaggagaaaaaattatggttttggtgacggctcacaagagagaa 7049181  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 179 - 253
Target Start/End: Complemental strand, 10744615 - 10744540
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactaga 253  Q
    ||||||| |||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||| ||||||||    
T  10744615 agttagaggagtgattttgggtcaaaagttgaccctaaatcacccatctttggtggatgaaggtgaagaaactaga 10744540  T

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Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 32457684 - 32457609
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaacta 251  Q
    ||||||||||| |||||||| |||||||||||||| |||||||| |||||||| || |||||||||||||||||||    
T  32457684 cgagttagatgggtgattttgggtcaaaaattgacgctaaatcacccctctttagtagatgaaggagaaaaaacta 32457609  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 291
Target Start/End: Complemental strand, 32804331 - 32804218
Alignment:
Q  178 gagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagag 276  Q
    |||||||||| |||||||| |||||||||||||||||||||||||| |||| || |||||||| ||||  |||||| ||||| ||||| | ||| |||||    
T  32804331 gagttagatgggtgattttgggtcaaaaattgaccctaaatcacccatcttagg-ggatgaagtagaagtaactagggttttggtgactgttcacaagag 32804233  T
Q  277 agaaggggaagagag 291  Q
    |||| ||||| ||||    
T  32804232 agaaagggaatagag 32804218  T

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Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 177 - 291
Target Start/End: Complemental strand, 20845046 - 20844930
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc--tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataag 274  Q
    ||||||||| | |||||||| ||||||||||||||| | ||| ||||  |||||||| ||| |||||||| ||||||  ||||| ||||||||||| |||    
T  20845046 cgagttagaggggtgattttgggtcaaaaattgaccttgaattaccccctctttggtagataaaggagaagaaactaaggttttggtgacggctcacaag 20844947  T
Q  275 agagaaggggaagagag 291  Q
    |||||| ||||| ||||    
T  20844946 agagaaagggaaaagag 20844930  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 192 - 286
Target Start/End: Complemental strand, 32574476 - 32574381
Alignment:
Q  192 attttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggggaa 286  Q
    ||||| |||||||||||||| ||||| ||||  | ||||||||||||||||||| ||| ||| ||||| ||||||||||| ||||||||| |||||    
T  32574476 attttgggtcaaaaattgactctaaaacacctatatttggtggatgaaggagaagaaaatagggttttggtgacggctcacaagagagaaagggaa 32574381  T

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Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 189 - 270
Target Start/End: Complemental strand, 8644271 - 8644189
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctca 270  Q
    |||||||| |||||||||||||||||||||||||| | |||| ||||||||||| |  ||||||| ||||| |||||||||||    
T  8644271 gtgatttttggtcaaaaattgaccctaaatcacccatttttgatggatgaaggaaatgaaactagggttttggtgacggctca 8644189  T

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Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 179 - 264
Target Start/End: Original strand, 12576556 - 12576642
Alignment:
Q  179 agttagatgagtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagtttttgtgac 264  Q
    ||||||| | |||||||  ||||||||||||||||||||||| |||||||| |||||||||||| || |||||||  ||||||||||    
T  12576556 agttagaggggtgatttagggtcaaaaattgaccctaaatcacccctctttcgtggatgaaggaaaagaaactaggatttttgtgac 12576642  T

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Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 204 - 291
Target Start/End: Complemental strand, 31804283 - 31804195
Alignment:
Q  204 aaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggggaagagag 291  Q
    ||||||| |||||||||||| ||||| |||||| |||||||||||||||  |||||||||| | |||| ||| ||||| ||||||||||    
T  31804283 aaattgatcctaaatcacccctctttagtggataaaggagaaaaaactatggtttttgtgatgactcacaagcgagaatgggaagagag 31804195  T

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Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 279
Target Start/End: Complemental strand, 32258021 - 32257919
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    |||||| ||||||||||||  ||||||||||||||| || |||| ||||||||| |||||||| ||||| |||||||  |||| |||||| |||| ||||    
T  32258021 cgagtttgatgagtgatttcgggtcaaaaattgaccttacatcatccctctttgatggatgaa-gagaagaaactaggattttagtgacgactcacaaga 32257923  T
Q  276 gaga 279  Q
    ||||    
T  32257922 gaga 32257919  T

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Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 180 - 257
Target Start/End: Original strand, 4663899 - 4663977
Alignment:
Q  180 gttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagttt 257  Q
    |||||| | |||||||| ||||||||||||||||  |||||||| ||||||||||||||||||||| ||| ||| ||||    
T  4663899 gttagaggggtgattttgggtcaaaaattgacccacaatcacccctctttggtggatgaaggagaagaaattagggttt 4663977  T

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Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 27575109 - 27575185
Alignment:
Q  183 agatgagtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagtttt 258  Q
    ||||| ||||||||||||||||||||||  ||| |||| ||||||||| |||||||| ||||| |||||||| ||||    
T  27575109 agatgggtgattttaggtcaaaaattgattctatatcatccctctttgatggatgaaagagaataaactagaatttt 27575185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 275
Target Start/End: Original strand, 548941 - 549038
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    ||||||||| | |||||||| ||||||||||||||| || ||||| | || | ||||||||||||||||||| |||  ||||  |||||||||| ||||    
T  548941 cgagttagaggggtgattttgggtcaaaaattgaccttatatcactc-ctctagtggatgaaggagaaaaaattaggattttgatgacggctcacaaga 549038  T

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Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 13234195 - 13234229
Alignment:
Q  189 gtgattttaggtcaaaaattgaccctaaatcaccc 223  Q
    |||||||||||||||||||||||||||||||||||    
T  13234195 gtgattttaggtcaaaaattgaccctaaatcaccc 13234229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 19759826 - 19759780
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc 223  Q
    ||||||||| | |||||||| ||||||||||||||||||||||||||    
T  19759826 cgagttagaggggtgattttgggtcaaaaattgaccctaaatcaccc 19759780  T

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Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 8633275 - 8633343
Alignment:
Q  212 cctaaatcaccct-ctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagaga 279  Q
    ||||||||||||| |||| |||||| ||| |||| |||||||  |||||||||||||||| ||||||||    
T  8633275 cctaaatcacccttctttcgtggataaagaagaagaaactaggatttttgtgacggctcacaagagaga 8633343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 31747977 - 31747915
Alignment:
Q  198 ggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagttttt 259  Q
    ||||||||||||||||||||||| | |||||||| ||||||| ||||| ||| || |||||||    
T  31747977 ggtcaaaaattgaccctaaatcatctctctttggcggatgaatgagaagaaagtaaagttttt 31747915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 34020635 - 34020582
Alignment:
Q  198 ggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaact 250  Q
    |||||||||||||||||||| || ||||||||||| ||||||| |||| |||||    
T  34020635 ggtcaaaaattgaccctaaaccacccctctttggtagatgaagaagaagaaact 34020582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 891611 - 891551
Alignment:
Q  192 attttaggtcaaaaattgaccctaaatcacc-ctctttggtggatgaaggagaaaaaacta 251  Q
    ||||| |||||||||| |||||| ||||||| ||||||  |||||||||||||| ||||||    
T  891611 attttgggtcaaaaatcgacccttaatcacctctctttaatggatgaaggagaagaaacta 891551  T

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Target: scaffold1294 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold1294
Description:

Target: scaffold1294; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 190 - 280
Target Start/End: Complemental strand, 805 - 714
Alignment:
Q  190 tgattttaggtcaaaaattgaccctaaatcacc-ctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaa 280  Q
    ||||||| ||||||||||||||| ||||||||  || ||||||||||||||||||| |||||||||||||  ||||||||||||| ||||||    
T  805 tgatttttggtcaaaaattgaccttaaatcacatctttttggtggatgaaggagaagaaactagagttttgatgacggctcataatagagaa 714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 190 - 291
Target Start/End: Original strand, 1181 - 1282
Alignment:
Q  190 tgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggggaaga 288  Q
    ||||||| ||||||||||||||| |||||||||| ||||||||||||||| |||||  |||||||||||  ||||||||||| ||||||||| ||||| |    
T  1181 tgattttgggtcaaaaattgacc-taaatcacccatctttggtggatgaaagagaagtaactagagtttaggtgacggctcacaagagagaaagggaaaa 1279  T
Q  289 gag 291  Q
    |||    
T  1280 gag 1282  T

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Target: scaffold0011 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 269
Target Start/End: Complemental strand, 11056 - 10964
Alignment:
Q  178 gagttagatgagtgattttaggtcaaaaattgaccctaaatcaccc-tctttggtggatgaaggagaaaaaactagagtttttgtgacggctc 269  Q
    |||||||| | ||||||||| ||||||||||||||| ||||||||| ||||||||| ||||  ||||| ||||||| ||||| ||||||||||    
T  11056 gagttagaggggtgattttaagtcaaaaattgacccaaaatcacccatctttggtgtatgatagagaagaaactagggttttggtgacggctc 10964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 177 - 281
Target Start/End: Original strand, 11853 - 11957
Alignment:
Q  177 cgagttagatgagtgattttaggtcaaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataaga 275  Q
    |||||||||||||||||||| |||||||||||||| |||||||| |  |||||||| ||||||  |||||||| ||||| |||||||||  || | ||||    
T  11853 cgagttagatgagtgattttgggtcaaaaattgacactaaatcatctatctttggt-gatgaaatagaaaaaattagagcttttgtgacaacttacaaga 11951  T
Q  276 gagaag 281  Q
    ||||||    
T  11952 gagaag 11957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 280
Target Start/End: Complemental strand, 244647 - 244568
Alignment:
Q  202 aaaaattgaccctaaatca-ccctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaa 280  Q
    ||||||||||||||||||| |||||||| |||||||||| |||| |||||   ||||| ||||||||||| |||||||||    
T  244647 aaaaattgaccctaaatcaaccctcttttgtggatgaagaagaagaaacttaggttttggtgacggctcacaagagagaa 244568  T

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Target: scaffold0316 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 291
Target Start/End: Original strand, 12292 - 12385
Alignment:
Q  190 tgattttaggtcaaaaattgaccctaaatcaccctctttggtggatgaaggagaaaaaactagagtttttgtgacggctcataagagagaaggggaagag 289  Q
    ||||||| |||||||||||||||||||        |||||||||||||||||||| |||||||  |||| |||| |||||| ||| ||||| ||||| ||    
T  12292 tgattttgggtcaaaaattgaccctaa--------ctttggtggatgaaggagaagaaactaggattttggtgatggctcacaagggagaaagggaaaag 12383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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