View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17676_low_1 (Length: 801)
Name: NF17676_low_1
Description: NF17676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17676_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 577; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 180 - 787
Target Start/End: Complemental strand, 46556909 - 46556308
Alignment:
| Q |
180 |
gtgatggagaaagcagtgatgaaggtaaccaaaccgatggtggcaacgaaaacgaagctgttaaggttgttgttgctgctaccgaaggtggtagtggtgg |
279 |
Q |
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| T |
46556909 |
gtgatggagaaagcagtgatgaaggtaaccaaaccgatggtggcaacgaaaacgaagctgttaaggttgttgttgctgctaccgaaggtggtagtggtgg |
46556810 |
T |
|
| Q |
280 |
tggatggccacccggaagaggcggtgtacaatttcaagaaataaagccagaggtgagacatgttacgagttttccagccggtaaccagttaccggttgca |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46556809 |
tggatggccacccggaagaggcggtgtacaatttcaagaaataaagccagaggtgagacatgttacgagttttccagccggtaaccagttaccggttgca |
46556710 |
T |
|
| Q |
380 |
gagaaaaaagttacaatggccatggagaatgcagggttaaacgacggtggatacagaaggaatagaatttactatcaggggcaaagagggaatagtgaag |
479 |
Q |
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| T |
46556709 |
gagaaaaaagttacaatggccatggagaatgcagggttaaacgacggtggatacagaaggaatagaatttactatcaggggcaaagagggaatagtgaag |
46556610 |
T |
|
| Q |
480 |
gtttaaatgttactttcgaaccacctccttccggtggtgattggaatcagaatcagaatcagatgcatggacatgggccttatggacctgggtctggccc |
579 |
Q |
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| T |
46556609 |
gtttaaatgttactttcgaacctcctccttccggtggtgattggaatcagaat------cagatgcatggacatgggccttgtggacctgggtctggccc |
46556516 |
T |
|
| Q |
580 |
aggacaagtttcatttatgggcccaccacctaatgagagtccaccacggaatcaatacgcaccgcattatcatcacgcaccagcatctcctacggtgtgt |
679 |
Q |
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| T |
46556515 |
aggacaagtttcatttatgggcccaccacctaatgagagtccaccacggaatcaatacgcaccgcattatcatcacgcaccagcatctcctacggtgtgt |
46556416 |
T |
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| Q |
680 |
ggtggaaactacttacatacggcgtatcctacttctatgagatacggtgcatcgtattgtacctcgttgtcacaaccgtattcatacgcttatacgcatc |
779 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46556415 |
ggtggaaactacttacatacggcgtatcctacttctatgagatacggtgcatcgtattgtacctcgttgtcacaaccgtattcatacgcttatacgcatc |
46556316 |
T |
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| Q |
780 |
aaagtaat |
787 |
Q |
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|||||||| |
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| T |
46556315 |
aaagtaat |
46556308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 46557073 - 46556986
Alignment:
| Q |
16 |
aaaggggactgtcgacaccgatacactgattaagatactaacacaaaccggtaaacgagctgagttatggcctgatacagaaccaatc |
103 |
Q |
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| T |
46557073 |
aaaggggactgtcgacaccgatacactgattaagatactaacacaaaccggtaaacgagctgagttatggcctgatacagaaccaatc |
46556986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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