View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17676_low_11 (Length: 401)

Name: NF17676_low_11
Description: NF17676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17676_low_11
NF17676_low_11
[»] chr8 (13 HSPs)
chr8 (23-317)||(35430936-35431233)
chr8 (64-176)||(39820436-39820547)
chr8 (60-119)||(1676715-1676774)
chr8 (51-116)||(13009493-13009558)
chr8 (64-114)||(13845241-13845291)
chr8 (60-113)||(3658150-3658203)
chr8 (110-176)||(36450694-36450759)
chr8 (104-174)||(44067574-44067644)
chr8 (134-179)||(13436907-13436952)
chr8 (51-116)||(40063945-40064010)
chr8 (55-116)||(44067514-44067575)
chr8 (60-176)||(30067968-30068084)
chr8 (104-176)||(33389295-33389367)
[»] chr7 (12 HSPs)
chr7 (60-178)||(23751903-23752020)
chr7 (51-116)||(29812664-29812729)
chr7 (63-163)||(12278841-12278941)
chr7 (55-113)||(4017797-4017855)
chr7 (51-113)||(22683758-22683820)
chr7 (60-116)||(23930222-23930278)
chr7 (62-116)||(17780084-17780138)
chr7 (104-178)||(21138929-21139002)
chr7 (55-113)||(38804558-38804616)
chr7 (65-177)||(21880160-21880272)
chr7 (55-116)||(43249991-43250052)
chr7 (52-116)||(7133278-7133342)
[»] chr5 (10 HSPs)
chr5 (60-174)||(7997108-7997222)
chr5 (51-116)||(39695999-39696064)
chr5 (64-116)||(43554528-43554580)
chr5 (55-106)||(42469219-42469270)
chr5 (75-172)||(36577616-36577717)
chr5 (49-103)||(2577193-2577247)
chr5 (52-114)||(18607099-18607161)
chr5 (64-114)||(25863211-25863261)
chr5 (57-181)||(19737416-19737541)
chr5 (65-114)||(31264446-31264495)
[»] chr4 (14 HSPs)
chr4 (51-178)||(3144585-3144717)
chr4 (62-176)||(39507059-39507173)
chr4 (55-116)||(20743278-20743339)
chr4 (105-176)||(17876214-17876285)
chr4 (55-116)||(23386143-23386205)
chr4 (55-116)||(24343505-24343566)
chr4 (64-116)||(31243548-31243600)
chr4 (55-111)||(46971904-46971960)
chr4 (66-106)||(49659533-49659573)
chr4 (66-116)||(6273953-6274003)
chr4 (60-109)||(34515881-34515930)
chr4 (51-108)||(47191001-47191058)
chr4 (63-103)||(7424676-7424716)
chr4 (64-116)||(53968553-53968605)
[»] chr6 (14 HSPs)
chr6 (55-116)||(6389741-6389802)
chr6 (60-173)||(12235462-12235575)
chr6 (60-116)||(26247429-26247485)
chr6 (60-176)||(34446568-34446690)
chr6 (63-116)||(17168463-17168516)
chr6 (66-110)||(2153893-2153937)
chr6 (65-175)||(33419181-33419292)
chr6 (60-117)||(12086344-12086401)
chr6 (50-119)||(13689190-13689259)
chr6 (63-116)||(19602181-19602234)
chr6 (62-112)||(6299517-6299567)
chr6 (62-112)||(6306327-6306377)
chr6 (60-105)||(7625125-7625170)
chr6 (50-87)||(14819654-14819691)
[»] chr3 (22 HSPs)
chr3 (55-119)||(15864831-15864895)
chr3 (55-174)||(24204983-24205102)
chr3 (55-114)||(25892458-25892517)
chr3 (62-175)||(25365467-25365580)
chr3 (64-164)||(26665143-26665243)
chr3 (60-176)||(21211291-21211413)
chr3 (65-111)||(1830351-1830397)
chr3 (63-113)||(34189433-34189483)
chr3 (64-179)||(3730105-3730217)
chr3 (63-116)||(14223853-14223906)
chr3 (55-115)||(8903430-8903489)
chr3 (60-116)||(12704657-12704713)
chr3 (107-185)||(7949015-7949092)
chr3 (134-176)||(17005548-17005590)
chr3 (63-113)||(25326432-25326482)
chr3 (60-114)||(25652033-25652087)
chr3 (62-116)||(52369780-52369834)
chr3 (57-110)||(20691319-20691372)
chr3 (63-116)||(25074795-25074848)
chr3 (134-175)||(25211607-25211648)
chr3 (63-116)||(27903638-27903691)
chr3 (51-119)||(12100264-12100331)
[»] scaffold0199 (1 HSPs)
scaffold0199 (60-119)||(1952-2011)
[»] chr2 (14 HSPs)
chr2 (63-116)||(23354652-23354705)
chr2 (51-116)||(25544475-25544540)
chr2 (52-113)||(38919201-38919262)
chr2 (62-119)||(12748689-12748746)
chr2 (63-116)||(23354995-23355048)
chr2 (63-116)||(24011042-24011095)
chr2 (110-176)||(30563474-30563540)
chr2 (63-113)||(37986785-37986835)
chr2 (63-153)||(18570978-18571068)
chr2 (64-118)||(22085011-22085066)
chr2 (63-113)||(10535762-10535812)
chr2 (54-116)||(11308004-11308065)
chr2 (63-176)||(34006930-34007044)
chr2 (63-116)||(19573984-19574037)
[»] chr1 (12 HSPs)
chr1 (51-115)||(6573983-6574047)
chr1 (63-178)||(19637774-19637889)
chr1 (60-116)||(42004947-42005003)
chr1 (55-113)||(48415728-48415787)
chr1 (60-114)||(6936402-6936456)
chr1 (50-176)||(40747707-40747839)
chr1 (51-98)||(23440004-23440051)
chr1 (65-110)||(12040688-12040734)
chr1 (63-179)||(7988388-7988504)
chr1 (60-116)||(21145469-21145526)
chr1 (61-113)||(11634127-11634179)
chr1 (60-176)||(22794018-22794134)
[»] scaffold0778 (1 HSPs)
scaffold0778 (55-112)||(4404-4461)
[»] scaffold0598 (1 HSPs)
scaffold0598 (60-116)||(8053-8109)


Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 23 - 317
Target Start/End: Complemental strand, 35431233 - 35430936
Alignment:
Q  23 cacaaacatcatatacaatacagataaagacaccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggacatcg 122  Q
    |||| |||||| |||||| ||||| | ||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35431233 cacagacatcagatacaacacagacagagataccgaaacggataataatttgagaaaatgacatattttagtgtaatcataggtgtcgtgtcggacatcg 35431134  T
Q  123 atgcgtatccaacaccaggacacccctaatccaagaagtgtttgtgcttcatagattctaacctgtagcgtgaaggtcacaattatgatagttagaaaat 222  Q
    |||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  35431133 atgcatatccaacaccaggacacccctaatccaaaaagtgtctgtgcttcatagattctaacctgtatcgtgaaggtcacaattatgatagttagaaaat 35431034  T
Q  223 tatacataacataatgcctt-aagaaagaaaattcatttcattacagacatatgagacggt--nnnnnnngctcaattctaaatctatgctcaaactc 317  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||         ||||||||||||||||||||||||||||    
T  35431033 tatacataacataatgccttaaagaaagaaaattcatttcattacagacatatgagacagtaaaaaaaaagctcaattctaaatctatgctcaaactc 35430936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 39820436 - 39820547
Alignment:
Q  64 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgt 163  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||| |||| ||| ||| | |||||| |||||||| ||||||||    
T  39820436 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggacaccgacgcgtgtccgaca-cgggacacgcctaatccgagaagtgt 39820534  T
Q  164 ttgtgcttcatag 176  Q
      |||||||||||    
T  39820535 ccgtgcttcatag 39820547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 1676715 - 1676774
Alignment:
Q  60 acggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggaca 119  Q
    ||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||    
T  1676715 acggataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgtgtcggaca 1676774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 13009558 - 13009493
Alignment:
Q  51 gacaccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    |||||||| |||||||||||||| ||||||  ||||| ||||||||||||||| ||||||||||||    
T  13009558 gacaccgacacggataataatttgagaaaacaatataatttagtgtaatcataagtgtcgtgtcgg 13009493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 13845241 - 13845291
Alignment:
Q  64 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtc 114  Q
    |||||||||| ||||||||||||| ||||| ||||||||||||||||||||    
T  13845241 ataataatttgagaaaatgatataatttagagtaatcataggtgtcgtgtc 13845291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 3658150 - 3658203
Alignment:
Q  60 acggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgt 113  Q
    |||||||||||||| ||||||| || || || ||||||||||||||||||||||    
T  3658150 acggataataatttgagaaaataatgtagttcagtgtaatcataggtgtcgtgt 3658203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 36450759 - 36450694
Alignment:
Q  110 gtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgtttgtgcttcatag 176  Q
    |||||||||| ||| |||| ||| |||||||||||| |||||||| || ||||| ||||||||||||    
T  36450759 gtgtcggaca-cgacgcgtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcatag 36450694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 174
Target Start/End: Original strand, 44067574 - 44067644
Alignment:
Q  104 ggtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgtttgtgcttcat 174  Q
    ||||||||||||||||  ||||||| ||| |||||||||||| |||||| | || |||||  |||||||||    
T  44067574 ggtgtcgtgtcggacactgatgcgtgtccgacaccaggacacgcctaattcgaggagtgtccgtgcttcat 44067644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 13436952 - 13436907
Alignment:
Q  134 acaccaggacacccctaatccaagaagtgtttgtgcttcatagatt 179  Q
    ||||| |||||| ||||||||||| ||||| |||||||||||||||    
T  13436952 acaccgggacacgcctaatccaaggagtgtctgtgcttcatagatt 13436907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 40063945 - 40064010
Alignment:
Q  51 gacaccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    |||||||| ||  |||||||||| ||||||||| ||| || | |||||||||||| ||||||||||    
T  40063945 gacaccgacaccaataataatttgagaaaatgacataattcattgtaatcataggcgtcgtgtcgg 40064010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 44067514 - 44067575
Alignment:
Q  55 ccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    |||| |||||||||||||| ||||||||| ||| |  |||||||| ||| ||||||||||||    
T  44067514 ccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcgg 44067575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 176
Target Start/End: Complemental strand, 30068084 - 30067968
Alignment:
Q  60 acggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaa 159  Q
    |||||||||||||| ||||||||| ||| || ||| ||||| |||||| || |||||| | ||| | || ||| ||||  |||||| |||||||| |  |    
T  30068084 acggataataatttgagaaaatgacataattcagtataatcgtaggtgccgagtcggataccgacgtgtgtccgacactgggacacacctaatccgatga 30067985  T
Q  160 gtgtttgtgcttcatag 176  Q
    ||||  |||||||||||    
T  30067984 gtgtccgtgcttcatag 30067968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 33389367 - 33389295
Alignment:
Q  104 ggtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgtttgtgcttcatag 176  Q
    |||||||||||| ||| |||| ||| ||| ||||  ||| || |||||||||||||||||  |||||||||||    
T  33389367 ggtgtcgtgtcgaacaccgatacgtgtccgacactgggatacacctaatccaagaagtgtcggtgcttcatag 33389295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 60 - 178
Target Start/End: Original strand, 23751903 - 23752020
Alignment:
Q  60 acggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaa 159  Q
    |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||| ||| |||| ||  ||| | |||||| |||||||| | ||    
T  23751903 acggataataatttgataaaatgatataatttagtgtaatcataggtgtcgtgtcggacaccgacgcgtgtcagaca-cgggacacgcctaatccgataa 23752001  T
Q  160 gtgtttgtgcttcatagat 178  Q
    |||| ||||||||||||||    
T  23752002 gtgtctgtgcttcatagat 23752020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 29812729 - 29812664
Alignment:
Q  51 gacaccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    ||||||||  || |||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  29812729 gacaccgacccgtataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 29812664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 163
Target Start/End: Original strand, 12278841 - 12278941
Alignment:
Q  63 gataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtg 162  Q
    ||||||||||||||||||||| ||| || |||||||| ||| ||||||||||||||| | | |||| ||  ||||| |||||| |||||||| || ||||    
T  12278841 gataataatttaagaaaatgacataattcagtgtaattatatgtgtcgtgtcggacaccaacgcgtgtctgacaccgggacacacctaatcctaggagtg 12278940  T
Q  163 t 163  Q
    |    
T  12278941 t 12278941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 4017855 - 4017797
Alignment:
Q  55 ccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgt 113  Q
    |||| |||||||||||||| |||||| |||||| ||||||||||||||| |||||||||    
T  4017855 ccgacacggataataatttgagaaaacgatataatttagtgtaatcataagtgtcgtgt 4017797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 22683820 - 22683758
Alignment:
Q  51 gacaccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgt 113  Q
    |||||||| |||||||||||||| |||| |||||||| || |||| |||||||||||||||||    
T  22683820 gacaccgagacggataataatttgagaatatgatataattcagtgcaatcataggtgtcgtgt 22683758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 23930222 - 23930278
Alignment:
Q  60 acggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    ||||||| |||||| ||||||||| ||| || ||||||||||||||||| |||||||    
T  23930222 acggatagtaatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcgg 23930278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 17780138 - 17780084
Alignment:
Q  62 ggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    |||||||||||||||||||||| ||| ||   |||||| ||||||||||||||||    
T  17780138 ggataataatttaagaaaatgacataattctatgtaataataggtgtcgtgtcgg 17780084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 178
Target Start/End: Complemental strand, 21139002 - 21138929
Alignment:
Q  104 ggtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgtttgtgcttcatagat 178  Q
    ||||||||||||||||| ||| ||| ||| |||||||||||| | ||||| | | |||||| |||||||||||||    
T  21139002 ggtgtcgtgtcggacat-gatacgtgtccgacaccaggacacgcttaatcaagggagtgttcgtgcttcatagat 21138929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 38804616 - 38804558
Alignment:
Q  55 ccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgt 113  Q
    |||| |||||||||||||| ||||||||| ||| |  || |||||||||||||||||||    
T  38804616 ccgacacggataataatttcagaaaatgacataatccagggtaatcataggtgtcgtgt 38804558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 177
Target Start/End: Original strand, 21880160 - 21880272
Alignment:
Q  65 taataatttaagaaaatgatatattttagtgtaatcataggtgtcg-tgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgt 163  Q
    ||||||||| ||||||| | ||| || |||||||| | | |||||| ||||||||| |||  | | ||| |||||||||||| |||||||| ||||||||    
T  21880160 taataatttgagaaaattacataattcagtgtaattacaagtgtcggtgtcggaca-cgacacatgtccgacaccaggacacgcctaatccgagaagtgt 21880258  T
Q  164 ttgtgcttcataga 177  Q
      ||||||||||||    
T  21880259 ccgtgcttcataga 21880272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 43249991 - 43250052
Alignment:
Q  55 ccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    |||| |||||||||||||| ||||||||| ||| |  |||||||| ||| ||||||||||||    
T  43249991 ccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcgg 43250052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 7133342 - 7133278
Alignment:
Q  52 acaccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    ||||||| || ||| ||||||| ||||||||| ||| || ||||||||||||||||  |||||||    
T  7133342 acaccgacacagatgataatttgagaaaatgacataattcagtgtaatcataggtggtgtgtcgg 7133278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 60 - 174
Target Start/End: Complemental strand, 7997222 - 7997108
Alignment:
Q  60 acggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaa 159  Q
    |||||||||||||| ||||||||||||| |  |||||||| ||| |||||||||||||||  || |||| ||| ||| |||||||| |||||| | ||||    
T  7997222 acggataataatttgagaaaatgatataatacagtgtaattataagtgtcgtgtcggacactgacgcgtgtccgacatcaggacacacctaattcgagaa 7997123  T
Q  160 gtgtttgtgcttcat 174  Q
    |||||||||||||||    
T  7997122 gtgtttgtgcttcat 7997108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 39696064 - 39695999
Alignment:
Q  51 gacaccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    |||||||| || || |||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  39696064 gacaccgacaccgacaataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 39695999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 43554528 - 43554580
Alignment:
Q  64 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  43554528 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 43554580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 42469219 - 42469270
Alignment:
Q  55 ccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggt 106  Q
    |||| |||||||||||||| ||||||||| ||||||||||||||||||||||    
T  42469219 ccgacacggataataatttgagaaaatgacatattttagtgtaatcataggt 42469270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 172
Target Start/End: Complemental strand, 36577717 - 36577616
Alignment:
Q  75 agaaaatgatatattttagtgtaatcataggtgtcgtgtcg-----gacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgtttgtgc 169  Q
    ||||||||||||| |||||| |||| ||| |||||||||||     |||| |||||||||||| ||| | ||| || ||||||||||||||||| |||||    
T  36577717 agaaaatgatataatttagtataattatatgtgtcgtgtcggtgtcgacaccgatgcgtatccgaca-cgggatacgcctaatccaagaagtgtctgtgc 36577619  T
Q  170 ttc 172  Q
    |||    
T  36577618 ttc 36577616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 2577247 - 2577193
Alignment:
Q  49 aagacaccgaaacggataataatttaagaaaatgatatattttagtgtaatcata 103  Q
    |||| ||||| || ||||||||||| ||||||||| ||| |||||||||||||||    
T  2577247 aagaaaccgacaccgataataatttgagaaaatgacataatttagtgtaatcata 2577193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 18607161 - 18607099
Alignment:
Q  52 acaccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtc 114  Q
    ||||||| | |||||||||||| ||||||| | ||| || | |||||||||||||||||||||    
T  18607161 acaccgacatggataataatttgagaaaataacataattcaatgtaatcataggtgtcgtgtc 18607099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 25863211 - 25863261
Alignment:
Q  64 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtc 114  Q
    |||||||||| ||||||||||||| || |||||||| ||| ||||||||||    
T  25863211 ataataatttgagaaaatgatataattcagtgtaattataagtgtcgtgtc 25863261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 181
Target Start/End: Complemental strand, 19737541 - 19737416
Alignment:
Q  57 gaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcg-tgtcggacatcgatgcgtatccaacaccaggacacccctaatcca 155  Q
    ||||| ||||||||||| ||||||| | ||| || | || ||||||| |||||| |||  |||| | ||| |||||| |||||| |||||  ||||||      
T  19737541 gaaaccgataataatttgagaaaattacataattcaatgcaatcatatgtgtcggtgtttgacaccaatgtgtatccgacaccaagacacatctaatctg 19737442  T
Q  156 agaagtgtttgtgcttcatagattct 181  Q
    || |||||||||||||||||| ||||    
T  19737441 aggagtgtttgtgcttcatagcttct 19737416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 31264446 - 31264495
Alignment:
Q  65 taataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtc 114  Q
    ||||||||| ||||||||| ||| || |||||||||||| ||||||||||    
T  31264446 taataatttgagaaaatgacataattcagtgtaatcataagtgtcgtgtc 31264495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 51 - 178
Target Start/End: Complemental strand, 3144717 - 3144585
Alignment:
Q  51 gacaccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcg------gacatcgatgcgtatccaacaccaggaca 144  Q
    |||||| | |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||      |||| | | |||| |||||||| | ||||    
T  3144717 gacacctacacggataataatttcagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcagacaccaacgcgtgtccaacacga-gaca 3144619  T
Q  145 cccctaatccaagaagtgtttgtgcttcatagat 178  Q
    | |||||||| ||||||||  |||||||||||||    
T  3144618 cacctaatccgagaagtgtccgtgcttcatagat 3144585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 176
Target Start/End: Complemental strand, 39507173 - 39507059
Alignment:
Q  62 ggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagt 161  Q
    ||||||||||||| |||||||||||| || |||||||||||||||||  |||||||||  ||| ||| ||| |||||  ||||| |||| ||| || |||    
T  39507173 ggataataatttatgaaaatgatataattaagtgtaatcataggtgttatgtcggacactgatacgtgtccgacaccgagacacacctattccgaggagt 39507074  T
Q  162 gtttgtgcttcatag 176  Q
    |||  ||||||||||    
T  39507073 gttactgcttcatag 39507059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 20743339 - 20743278
Alignment:
Q  55 ccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    |||| |||||||||||||| ||||||||| ||| || ||||||||||||||||| |||||||    
T  20743339 ccgacacggataataatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcgg 20743278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 17876214 - 17876285
Alignment:
Q  105 gtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgtttgtgcttcatag 176  Q
    |||||||||| |||| ||| || | ||| |||||||||||| ||||||||||| ||||| ||||||||||||    
T  17876214 gtgtcgtgtcagacaccgacgcttgtccgacaccaggacacacctaatccaaggagtgtctgtgcttcatag 17876285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 23386143 - 23386205
Alignment:
Q  55 ccgaaacggataataatttaagaaaa-tgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    |||| |||||| ||||||||| |||| ||||||| ||||||||||||||||||||| ||||||    
T  23386143 ccgatacggatgataatttaaaaaaaatgatataatttagtgtaatcataggtgtcatgtcgg 23386205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 24343505 - 24343566
Alignment:
Q  55 ccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    |||| |||||||||||||| ||||||| | ||| || |||||||| ||||||||||||||||    
T  24343505 ccgacacggataataatttgagaaaattacataattcagtgtaattataggtgtcgtgtcgg 24343566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 31243600 - 31243548
Alignment:
Q  64 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    |||||||||| ||||||||| ||| || |||||||||||||||||| ||||||    
T  31243600 ataataatttgagaaaatgacataattcagtgtaatcataggtgtcatgtcgg 31243548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 46971960 - 46971904
Alignment:
Q  55 ccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgt 111  Q
    |||| |||||||||||||| ||| ||||| |||||||| ||| ||||||||||||||    
T  46971960 ccgacacggataataatttgagataatgacatattttactgttatcataggtgtcgt 46971904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 49659573 - 49659533
Alignment:
Q  66 aataatttaagaaaatgatatattttagtgtaatcataggt 106  Q
    |||||||| ||||||||||||| ||||||||||||||||||    
T  49659573 aataatttgagaaaatgatataatttagtgtaatcataggt 49659533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 6273953 - 6274003
Alignment:
Q  66 aataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    |||||||| ||||||||||||| ||||||||||| ||||  ||||||||||    
T  6273953 aataatttgagaaaatgatataatttagtgtaattatagtcgtcgtgtcgg 6274003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 34515930 - 34515881
Alignment:
Q  60 acggataataatttaagaaaatgatatattttagtgtaatcataggtgtc 109  Q
    ||||||||||||| |||||||||| ||| || ||||||| ||||||||||    
T  34515930 acggataataattcaagaaaatgacataattcagtgtaaacataggtgtc 34515881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 47191058 - 47191001
Alignment:
Q  51 gacaccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgt 108  Q
    |||||||| | ||||||||||||  |||||||| ||| |||||||||||| |||||||    
T  47191058 gacaccgacatggataataatttgcgaaaatgacataatttagtgtaatcctaggtgt 47191001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 7424676 - 7424716
Alignment:
Q  63 gataataatttaagaaaatgatatattttagtgtaatcata 103  Q
    ||||||||||||||||||| ||||| || ||||||||||||    
T  7424676 gataataatttaagaaaataatataattgagtgtaatcata 7424716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 53968553 - 53968605
Alignment:
Q  64 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    |||||||||||||||||||| ||| || ||||  ||||||| |||||||||||    
T  53968553 ataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcgg 53968605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 6389741 - 6389802
Alignment:
Q  55 ccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    |||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  6389741 ccgacacggataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 6389802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 173
Target Start/End: Complemental strand, 12235575 - 12235462
Alignment:
Q  60 acggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaa 159  Q
    |||||||||||||  ||||||||| ||| || ||||||||||||||||||||||| |||| ||| | || |||  |||| ||||||||||||||||| ||    
T  12235575 acggataataattagagaaaatgacataattcagtgtaatcataggtgtcgtgtccgacaccgacgtgtgtccggcaccgggacacccctaatccaaaaa 12235476  T
Q  160 gtgtttgtgcttca 173  Q
    ||||  ||||||||    
T  12235475 gtgtccgtgcttca 12235462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 26247429 - 26247485
Alignment:
Q  60 acggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||    
T  26247429 acggataataatttaagaaaatgacatattttagtataatcataggtttcgtgtcgg 26247485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 60 - 176
Target Start/End: Original strand, 34446568 - 34446690
Alignment:
Q  60 acggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg------acatcgatgcgtatccaacaccaggacacccctaatc 153  Q
    |||||||||||||| ||||||||| ||| || |||||||||||||||||||||||||      ||| ||| |||||||  ||||  |||||| |||||||    
T  34446568 acggataataatttgagaaaatgacataattcagtgtaatcataggtgtcgtgtcggtgtccaacaccgacgcgtatctgacactgggacacacctaatc 34446667  T
Q  154 caagaagtgtttgtgcttcatag 176  Q
    |||| |||||  |||||||||||    
T  34446668 caaggagtgtccgtgcttcatag 34446690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 17168516 - 17168463
Alignment:
Q  63 gataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||    
T  17168516 gataataatttgagaaaatgatataatttagtgtaataataggtgtcgtgtcgg 17168463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 2153937 - 2153893
Alignment:
Q  66 aataatttaagaaaatgatatattttagtgtaatcataggtgtcg 110  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||    
T  2153937 aataatttaagaaaatgatataatttagtgtaattataggtgtcg 2153893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 175
Target Start/End: Original strand, 33419181 - 33419292
Alignment:
Q  65 taataatttaagaaaatgatatattttagtgtaatcataggtgtcg-tgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgt 163  Q
    ||||||||| | ||| ||||||| || | |||||| ||| |||| | |||| |||| | | |||| |||||||||||||||  ||||||||||||||| |    
T  33419181 taataatttgaaaaattgatataattcaatgtaattatatgtgttggtgtcagacaccaacgcgtgtccaacaccaggacatgcctaatccaagaagtat 33419280  T
Q  164 ttgtgcttcata 175  Q
    ||||||||||||    
T  33419281 ttgtgcttcata 33419292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 12086401 - 12086344
Alignment:
Q  60 acggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgga 117  Q
    |||||||||||||| ||| ||||| ||| || ||| ||||||||||||||||||||||    
T  12086401 acggataataatttgagataatgacataattcagtttaatcataggtgtcgtgtcgga 12086344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 13689259 - 13689190
Alignment:
Q  50 agacaccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggaca 119  Q
    ||||||||| || ||||||||||| ||||||| | | |||| | ||||||||||||| ||||||||||||    
T  13689259 agacaccgacacagataataatttgagaaaataacaaatttcaatgtaatcataggtatcgtgtcggaca 13689190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 19602234 - 19602181
Alignment:
Q  63 gataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    ||||||||||| ||||||||||||| || ||||||||||||||| | |||||||    
T  19602234 gataataatttgagaaaatgatataattcagtgtaatcataggtattgtgtcgg 19602181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 6299517 - 6299567
Alignment:
Q  62 ggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtg 112  Q
    |||||||||||| ||||||||||||| || | |||||| ||||||||||||    
T  6299517 ggataataatttgagaaaatgatataattcaatgtaatgataggtgtcgtg 6299567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 6306327 - 6306377
Alignment:
Q  62 ggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtg 112  Q
    |||||||||||| ||||||||||||| || | |||||| ||||||||||||    
T  6306327 ggataataatttgagaaaatgatataattcaatgtaatgataggtgtcgtg 6306377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 7625125 - 7625170
Alignment:
Q  60 acggataataatttaagaaaatgatatattttagtgtaatcatagg 105  Q
    |||||||||||||| ||||||||||||| |||||| |||| |||||    
T  7625125 acggataataatttgagaaaatgatataatttagtataattatagg 7625170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 14819654 - 14819691
Alignment:
Q  50 agacaccgaaacggataataatttaagaaaatgatata 87  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  14819654 agacaccgacacggataataatttaagaaactgatata 14819691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 15864831 - 15864895
Alignment:
Q  55 ccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggaca 119  Q
    |||| |||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||    
T  15864831 ccgacacggataataatttgaaaaaatgatataatttagtgtaatcataggtgtcgtgtcggaca 15864895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 55 - 174
Target Start/End: Complemental strand, 24205102 - 24204983
Alignment:
Q  55 ccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatcc 154  Q
    |||| |||||||||||||| ||||||||| ||| |  |||||||| ||| |||||||||||||||  || |||| ||| |||||||||||| |||||| |    
T  24205102 ccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcggacactgacgcgtgtccgacaccaggacacgcctaattc 24205003  T
Q  155 aagaagtgtttgtgcttcat 174  Q
     || |||||  |||||||||    
T  24205002 gaggagtgtccgtgcttcat 24204983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 25892458 - 25892517
Alignment:
Q  55 ccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtc 114  Q
    |||||||  |||||||||||||||||||||||| || |||||||||||||||||||||||    
T  25892458 ccgaaacaaataataatttaagaaaatgatataattcagtgtaatcataggtgtcgtgtc 25892517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 25365467 - 25365580
Alignment:
Q  62 ggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagt 161  Q
    |||||||||||| |||| |||| ||| ||  ||||||||||| ||||||||||||||| ||||| || | | |||||||||||| |||||||  || | |    
T  25365467 ggataataatttgagaatatgacataattcggtgtaatcataagtgtcgtgtcggacaccgatgtgtgttcgacaccaggacacgcctaatctgaggaat 25365566  T
Q  162 gtttgtgcttcata 175  Q
    || |||||||||||    
T  25365567 gtatgtgcttcata 25365580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 64 - 164
Target Start/End: Original strand, 26665143 - 26665243
Alignment:
Q  64 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgt 163  Q
    |||||||||| |||||||||  |  || | |||||| ||||| ||||||||||||| ||| |||| ||| ||||||| ||||||||||| |||| |||||    
T  26665143 ataataatttgagaaaatgacgtgattcactgtaattataggcgtcgtgtcggacaccgaagcgtgtccgacaccagaacacccctaattcaaggagtgt 26665242  T
Q  164 t 164  Q
    |    
T  26665243 t 26665243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 176
Target Start/End: Original strand, 21211291 - 21211413
Alignment:
Q  60 acggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcg------gacatcgatgcgtatccaacaccaggacacccctaatc 153  Q
    |||||||||||||| ||||||| | ||| || |||||||| || ||||||||||||      |||| ||| |||| ||| ||||  |||||| |||||||    
T  21211291 acggataataatttgagaaaattacatagttcagtgtaattatgggtgtcgtgtcggtgttcgacaccgacgcgtgtccgacactgggacactcctaatc 21211390  T
Q  154 caagaagtgtttgtgcttcatag 176  Q
    | || ||||||||||||||||||    
T  21211391 cgaggagtgtttgtgcttcatag 21211413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 1830351 - 1830397
Alignment:
Q  65 taataatttaagaaaatgatatattttagtgtaatcataggtgtcgt 111  Q
    ||||||||||||||||||| ||| || ||||||||||||||||||||    
T  1830351 taataatttaagaaaatgacataattcagtgtaatcataggtgtcgt 1830397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 34189433 - 34189483
Alignment:
Q  63 gataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgt 113  Q
    ||||||||||| ||||||||| |||||| ||||||||| ||||||||||||    
T  34189433 gataataatttgagaaaatgacatatttcagtgtaatcgtaggtgtcgtgt 34189483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 3730217 - 3730105
Alignment:
Q  64 ataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgt 163  Q
    |||||||||| ||| ||||| ||| || ||||||||||||||||||||||| |||| | |||| | ||   |||| |||||| |||||||| || |||||    
T  3730217 ataataatttgagataatgacataattcagtgtaatcataggtgtcgtgtctgacaccaatgcatgtc---caccgggacacacctaatccgaggagtgt 3730121  T
Q  164 ttgtgcttcatagatt 179  Q
       |||||||||||||    
T  3730120 ccatgcttcatagatt 3730105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 14223906 - 14223853
Alignment:
Q  63 gataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    ||||||||||| |||||| |||||| ||||||||| ||||| ||||||||||||    
T  14223906 gataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcgg 14223853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 8903430 - 8903489
Alignment:
Q  55 ccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcg 115  Q
    |||| |||||||||| ||| ||||||||| |||||| |||||||| |||||||||||||||    
T  8903430 ccgacacggataatattttgagaaaatgacatattt-agtgtaattataggtgtcgtgtcg 8903489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 12704713 - 12704657
Alignment:
Q  60 acggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    |||||||||||||| | ||||||| ||| || | |||||||||||||||||||||||    
T  12704713 acggataataatttgaaaaaatgacataattcaatgtaatcataggtgtcgtgtcgg 12704657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 7949015 - 7949092
Alignment:
Q  107 gtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgtttgtgcttcatagattctaacc 185  Q
    |||||||||||||| |||  ||||||||||||||||||| |||||| | |  ||| ||||||||||| ||||| |||||    
T  7949015 gtcgtgtcggacat-gatttgtatccaacaccaggacacacctaatacgatgagtatttgtgcttcagagattataacc 7949092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 176
Target Start/End: Complemental strand, 17005590 - 17005548
Alignment:
Q  134 acaccaggacacccctaatccaagaagtgtttgtgcttcatag 176  Q
    ||||||||||||| ||||||| || ||||||||||||||||||    
T  17005590 acaccaggacacctctaatccgaggagtgtttgtgcttcatag 17005548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 25326432 - 25326482
Alignment:
Q  63 gataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgt 113  Q
    ||||||||||||| ||||| ||||| ||||||||||| |||| ||||||||    
T  25326432 gataataatttaaaaaaataatataatttagtgtaattatagatgtcgtgt 25326482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 25652087 - 25652033
Alignment:
Q  60 acggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtc 114  Q
    |||||||||||||| ||||||||||||| || |||||| | |||||||| |||||    
T  25652087 acggataataatttgagaaaatgatataattcagtgtagttataggtgttgtgtc 25652033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 52369780 - 52369834
Alignment:
Q  62 ggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    |||||||||||| ||||||| | ||| || | |||||||||||||||||||||||    
T  52369780 ggataataatttgagaaaattacataattcaatgtaatcataggtgtcgtgtcgg 52369834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 20691319 - 20691372
Alignment:
Q  57 gaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcg 110  Q
    ||||| ||||||||||| ||||||||| ||| || |||||||||||| ||||||    
T  20691319 gaaactgataataatttgagaaaatgacataattcagtgtaatcatatgtgtcg 20691372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 25074795 - 25074848
Alignment:
Q  63 gataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    ||||||||||| ||||||||| ||| || |||||||||||||| || |||||||    
T  25074795 gataataatttgagaaaatgacataattgagtgtaatcataggcgttgtgtcgg 25074848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 25211607 - 25211648
Alignment:
Q  134 acaccaggacacccctaatccaagaagtgtttgtgcttcata 175  Q
    |||||||||||| |||||||  ||||||||||||||||||||    
T  25211607 acaccaggacacgcctaatctgagaagtgtttgtgcttcata 25211648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 27903638 - 27903691
Alignment:
Q  63 gataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    ||||||||||| |||||| |||||| |||| |||||||||| |||| |||||||    
T  27903638 gataataatttgagaaaacgatataatttaatgtaatcataagtgttgtgtcgg 27903691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 12100264 - 12100331
Alignment:
Q  51 gacaccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggaca 119  Q
    ||||||||| || |||||||||| | ||| ||||||| || |||||||| |||||||||||||| ||||    
T  12100264 gacaccgaatcgcataataatttgacaaa-tgatataattcagtgtaataataggtgtcgtgtctgaca 12100331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 1952 - 2011
Alignment:
Q  60 acggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggaca 119  Q
    ||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||    
T  1952 acggataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgtgtcggaca 2011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 23354705 - 23354652
Alignment:
Q  63 gataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  23354705 gataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 23354652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 25544475 - 25544540
Alignment:
Q  51 gacaccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    |||||||| ||| |||||||||| ||||||||||||| || |||||||||||||||||||||||||    
T  25544475 gacaccgacacgtataataatttgagaaaatgatataattcagtgtaatcataggtgtcgtgtcgg 25544540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 38919201 - 38919262
Alignment:
Q  52 acaccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgt 113  Q
    ||||||| || ||||||||||| |||||||| |||| |||||||||||||||||||||||||    
T  38919201 acaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgt 38919262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 119
Target Start/End: Original strand, 12748689 - 12748746
Alignment:
Q  62 ggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggaca 119  Q
    |||||||||||| ||||||||| ||| || ||||||||||||||||| ||||||||||    
T  12748689 ggataataatttgagaaaatgacatagttcagtgtaatcataggtgttgtgtcggaca 12748746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 23355048 - 23354995
Alignment:
Q  63 gataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    ||||||||||| ||||||||||||| ||||||| ||||||||||||| ||||||    
T  23355048 gataataatttgagaaaatgatataatttagtgcaatcataggtgtcatgtcgg 23354995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 24011042 - 24011095
Alignment:
Q  63 gataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    ||||||||||| ||||||||| ||| |||||||||||||||||||||| |||||    
T  24011042 gataataatttgagaaaatgacataatttagtgtaatcataggtgtcgcgtcgg 24011095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 30563474 - 30563540
Alignment:
Q  110 gtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagtgtttgtgcttcatag 176  Q
    |||||||||| | | |||||||| ||||||||||| |||||||||||| |||  |||||||||||||    
T  30563474 gtgtcggacacccaggcgtatccgacaccaggacaaccctaatccaaggagtacttgtgcttcatag 30563540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 37986785 - 37986835
Alignment:
Q  63 gataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgt 113  Q
    ||||||||||| | |||||||||||||| ||||||||||||||| ||||||    
T  37986785 gataataatttgaaaaaatgatatatttgagtgtaatcataggtatcgtgt 37986835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 153
Target Start/End: Original strand, 18570978 - 18571068
Alignment:
Q  63 gataataatttaagaaaatgatatattttagtgtaatcataggtgtc-gtgtcggacatcgatgcgtatccaacaccaggacacccctaatc 153  Q
    ||||||||||| ||||||||| ||| || | |||||||||| ||||| |||||| ||| |||| | ||||| |||||||||||| |||||||    
T  18570978 gataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcgaaca-cgatacatatccgacaccaggacacgcctaatc 18571068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 22085011 - 22085066
Alignment:
Q  64 ataataatttaagaaaatgatatattttagtgtaatcataggtgtc-gtgtcggac 118  Q
    |||||||||||||||||||| ||| ||||||||||||||  ||||| |||||||||    
T  22085011 ataataatttaagaaaatgacataatttagtgtaatcatttgtgtcggtgtcggac 22085066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 10535812 - 10535762
Alignment:
Q  63 gataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgt 113  Q
    ||||||||||| ||||||||| ||| || |||||||||||| |||||||||    
T  10535812 gataataatttgagaaaatgacataattcagtgtaatcataagtgtcgtgt 10535762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 11308065 - 11308004
Alignment:
Q  54 accgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    ||||| ||||||| |||||| | ||||||| ||| || |||||||||||||||||||||||||    
T  11308065 accgacacggata-taatttgaaaaaatgacataattcagtgtaatcataggtgtcgtgtcgg 11308004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 176
Target Start/End: Complemental strand, 34007044 - 34006930
Alignment:
Q  63 gataataatttaagaaaatgatatattttagtgtaatcataggtgtc-gtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagt 161  Q
    ||||||||||| ||||| ||| ||| || |||||||||||||||||| |||| ||||| | || ||| ||  ||||| | |||| |||||| |||| |||    
T  34007044 gataataatttgagaaattgacataattcagtgtaatcataggtgtcggtgtgggacacctattcgtgtctgacaccggaacacacctaattcaaggagt 34006945  T
Q  162 gtttgtgcttcatag 176  Q
    ||  |||||||||||    
T  34006944 gtccgtgcttcatag 34006930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 19573984 - 19574037
Alignment:
Q  63 gataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    ||||||||||||||||||| | ||| || |||||||| ||||||| ||||||||    
T  19573984 gataataatttaagaaaataacataattcagtgtaattataggtggcgtgtcgg 19574037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 6573983 - 6574047
Alignment:
Q  51 gacaccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcg 115  Q
    |||||||| |||||| ||||||| ||| ||||||||| |||||||||||||||||||| ||||||    
T  6573983 gacaccgacacggatgataatttgagacaatgatataatttagtgtaatcataggtgttgtgtcg 6574047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 178
Target Start/End: Original strand, 19637774 - 19637889
Alignment:
Q  63 gataataatttaagaaaatgatatattttagtgtaatcataggtgtc-gtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagt 161  Q
    ||||||||||||||||||||| ||  || | |||||||||| ||||| |||||||||| |||| | ||||| ||||| |||| |||||||||| || |||    
T  19637774 gataataatttaagaaaatgacattattcaatgtaatcatatgtgtcggtgtcggaca-cgatacatatccgacaccgggacgcccctaatccgaggagt 19637872  T
Q  162 gtttgtgcttcatagat 178  Q
     ||||||| ||||||||    
T  19637873 atttgtgcatcatagat 19637889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 42005003 - 42004947
Alignment:
Q  60 acggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    |||||||||||||| ||||||||| ||| |||||||||||||||||||| |||||||    
T  42005003 acggataataatttgagaaaatgacataatttagtgtaatcataggtgttgtgtcgg 42004947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 48415787 - 48415728
Alignment:
Q  55 ccgaaacggataataattt-aagaaaatgatatattttagtgtaatcataggtgtcgtgt 113  Q
    |||| |||||||||||||| || ||||||||||| |||||||||||||||| ||||||||    
T  48415787 ccgacacggataataattttaaaaaaatgatataatttagtgtaatcatagatgtcgtgt 48415728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 6936456 - 6936402
Alignment:
Q  60 acggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtc 114  Q
    |||||||||||| | ||||||||| ||| || |||||||||||||||||||||||    
T  6936456 acggataataatctgagaaaatgacataattaagtgtaatcataggtgtcgtgtc 6936402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 176
Target Start/End: Complemental strand, 40747839 - 40747707
Alignment:
Q  50 agacaccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtc------gtgtcggacatcgatgcgtatccaacaccaggac 143  Q
    ||||||||| |||||||||||||| ||||||||| ||| || | |||||| |||||||||      |||||||||| |||| | | ||| ||||  ||||    
T  40747839 agacaccgacacggataataatttgagaaaatgacataattcaatgtaattataggtgtcatgttggtgtcggacaccgatccatgtcccacacagggac 40747740  T
Q  144 acccctaatccaagaagtgtttgtgcttcatag 176  Q
    ||||||||||| || || ||  |||||||||||    
T  40747739 acccctaatccgaggagcgtccgtgcttcatag 40747707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 23440004 - 23440051
Alignment:
Q  51 gacaccgaaacggataataatttaagaaaatgatatattttagtgtaa 98  Q
    |||||||| ||| |||||||||| ||||||||||||| ||||||||||    
T  23440004 gacaccgacacgtataataatttgagaaaatgatataatttagtgtaa 23440051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 12040734 - 12040688
Alignment:
Q  65 taataatttaagaaaatgatat-attttagtgtaatcataggtgtcg 110  Q
    |||||||||||||||||||||| |||| ||| |||||||||||||||    
T  12040734 taataatttaagaaaatgatataatttcagtataatcataggtgtcg 12040688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 179
Target Start/End: Complemental strand, 7988504 - 7988388
Alignment:
Q  63 gataataatttaagaaaatgatatattttagtgtaatcataggtg-tcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaagt 161  Q
    ||||||||||||||||| ||| ||| || | |||||||||| ||| | |||||||||| | || ||||| |||||||| ||||   ||| |||||| |||    
T  7988504 gataataatttaagaaagtgacataattcaatgtaatcataagtgttggtgtcggaca-caatacgtattcaacaccatgacatgtctagtccaaggagt 7988406  T
Q  162 gtttgtgcttcatagatt 179  Q
     | |||||||||||||||    
T  7988405 ttatgtgcttcatagatt 7988388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 21145469 - 21145526
Alignment:
Q  60 acggataataattt-aagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    |||||||||||||| || ||||||| ||| || |||||||||||||| ||||||||||    
T  21145469 acggataataatttgaaaaaaatgacataattcagtgtaatcataggcgtcgtgtcgg 21145526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 11634179 - 11634127
Alignment:
Q  61 cggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgt 113  Q
    ||||||||||||| ||||||  | ||| |||| ||||||||||||||||||||    
T  11634179 cggataataatttgagaaaacaacataatttaatgtaatcataggtgtcgtgt 11634127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 176
Target Start/End: Complemental strand, 22794134 - 22794018
Alignment:
Q  60 acggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcggacatcgatgcgtatccaacaccaggacacccctaatccaagaa 159  Q
    |||||||||||||| | ||||||| ||| |  |||||||| |||||||||||||| ||||  || || | ||| || || |||||| |||||| | || |    
T  22794134 acggataataatttgaaaaaatgacataatacagtgtaattataggtgtcgtgtccgacactgacgcatgtccgactccgggacacacctaattcgagga 22794035  T
Q  160 gtgtttgtgcttcatag 176  Q
    ||||  |||||||||||    
T  22794034 gtgtacgtgcttcatag 22794018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 4404 - 4461
Alignment:
Q  55 ccgaaacggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtg 112  Q
    ||||||| |||||||||||||||| |||||||| || ||||| ||||||| |||||||    
T  4404 ccgaaacagataataatttaagaatatgatataattcagtgtcatcatagatgtcgtg 4461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 8109 - 8053
Alignment:
Q  60 acggataataatttaagaaaatgatatattttagtgtaatcataggtgtcgtgtcgg 116  Q
    |||||||||||||| ||||||||| ||| || ||||||| ||||||| |||||||||    
T  8109 acggataataatttgagaaaatgacataattcagtgtaaacataggtatcgtgtcgg 8053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University