View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17676_low_12 (Length: 399)
Name: NF17676_low_12
Description: NF17676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17676_low_12 |
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| [»] scaffold0302 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 1193831 - 1194210
Alignment:
| Q |
1 |
gatgtttgcaacatcaattgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccgttcaacagaaaatattggtt |
100 |
Q |
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| T |
1193831 |
gatgtttgcaacatcaattgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccattcaacagaaaatattggtt |
1193930 |
T |
|
| Q |
101 |
gaaaggttgtaagataagtatagaatatgtgatgtggaaatggaaaaaggaagcgaatcaaatagccaacttgttagcaaaagtatgatcacaaatggat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1193931 |
gaaaggttgtaagataagtatagaatatgtgatgtggaaatggaaaaaggaagcaaatcaaatagccaacttgttagcaaaagtatgatcacaaatgggt |
1194030 |
T |
|
| Q |
201 |
ggcaacagaatatccaggcgtctatgtagataatgcagttctgccgagttctatttttgtagctgttgcagtatttttgcgtccgtcgtgttcaagggat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1194031 |
ggcaacagaatatccaggcgtctatgtagataatgcagttctgccgagttctatttttgtagctgttgcagtatttttgcgtccgtcgtgttcaagggat |
1194130 |
T |
|
| Q |
301 |
ttttccttctggtggtcctatgcagtttgctggctgcagcatagttggtgttgatatttttgcatctgtcatgtgttttt |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1194131 |
ttttccttctggtggtcctatgcagtttgctggctgcagcatagttggtgttgatatttttgcatctgtcatgtgttttt |
1194210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 295 - 376
Target Start/End: Original strand, 1183283 - 1183364
Alignment:
| Q |
295 |
agggatttttccttctggtggtcctatgcagtttgctggctgcagcatagttggtgttgatatttttgcatctgtcatgtgt |
376 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1183283 |
agggagttttccttctggtggtcctatgcagtttgctggctgcagcatagttggggttgatatttttgcatctgtcatgtgt |
1183364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 1236857 - 1236732
Alignment:
| Q |
1 |
gatgtttgcaacatcaattgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccgttcaacagaaaatattggtt |
100 |
Q |
| |
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||||||||||||||||||||| ||||||| || |||||||||| | |||||||| |||||||||||||| || |||||| |||| ||||||||||||||| |
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| T |
1236857 |
gatgtttgcaacatcaattggtttaaaaggctcaaatgaatctgagtttaaggcaattgtttttgcagtctagttgtcctttcagcagaaaatattggtt |
1236758 |
T |
|
| Q |
101 |
gaaaggttgtaagataagtatagaat |
126 |
Q |
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|||||||| | |||| |||| ||||| |
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| T |
1236757 |
gaaaggttattagattagtacagaat |
1236732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 897601 - 897709
Alignment:
| Q |
18 |
ttgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccgttcaacagaaaatattggttgaaaggttgtaagataa |
117 |
Q |
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|||| |||||||||| |||| ||||| | |||||| | ||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
897601 |
ttggtttaaaagactcaaataaatctgagtttaagacaattgtttttgcagtttagttttcctttcaacagaaaatattggttgaaaggttgtaagataa |
897700 |
T |
|
| Q |
118 |
gtatagaat |
126 |
Q |
| |
|
||||||||| |
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| T |
897701 |
gtatagaat |
897709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 1182898 - 1183023
Alignment:
| Q |
1 |
gatgtttgcaacatcaattgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccgttcaacagaaaatattggtt |
100 |
Q |
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|
|||||||| |||||||||||| |||||||||| ||| |||||| | |||||||| ||| |||||||||| || |||| ||||| |||||||||||||| |
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| T |
1182898 |
gatgtttgtaacatcaattggtttaaaagactcaaacgaatctgagtttaaggcaattctttttgcagtctagcggtcctttcaaaagaaaatattggtt |
1182997 |
T |
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| Q |
101 |
gaaaggttgtaagataagtatagaat |
126 |
Q |
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||||||||||| || ||||||||||| |
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| T |
1182998 |
gaaaggttgtaggagaagtatagaat |
1183023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 144 - 281
Target Start/End: Complemental strand, 1236609 - 1236472
Alignment:
| Q |
144 |
aaaaaggaagcgaatcaaatagccaacttgttagcaaaagtatgatcacaaatggatggcaacagaatatccaggcgtctatgtagataatgcagttctg |
243 |
Q |
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||||||||||| |||||||||||| |||||||| ||| | | ||||||| ||||||| ||| ||||||| ||| | ||||||||||||||| |||| |
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| T |
1236609 |
aaaaaggaagccaatcaaatagccgacttgttaataaatgaaggatcacagatggatgacaattgaatatctaggttttgatgtagataatgcaggtctg |
1236510 |
T |
|
| Q |
244 |
ccgagttctatttttgtagctgttgcagtatttttgcg |
281 |
Q |
| |
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| |||||| ||||||||||||||||| | |||||||| |
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| T |
1236509 |
caaagttctgtttttgtagctgttgcactctttttgcg |
1236472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 296 - 360
Target Start/End: Complemental strand, 1236433 - 1236369
Alignment:
| Q |
296 |
gggatttttccttctggtggtcctatgcagtttgctggctgcagcatagttggtgttgatatttt |
360 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
1236433 |
gggagttttccttctggcggtcctatgcagtttgctggttgcagcatatttggtgttgatatttt |
1236369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 377
Target Start/End: Original strand, 20472 - 20553
Alignment:
| Q |
296 |
gggatttttccttctggtggtcctatgcagtttgctggctgcagcatagttggtgttgatatttttgcatctgtcatgtgtt |
377 |
Q |
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|||||||||||||||||||||||||| |||||||||||| | | ||||||||| ||||||||||| |||||||||||||| |
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| T |
20472 |
gggatttttccttctggtggtcctatacagtttgctggcagtaacatagttggagttgatattttgtgatctgtcatgtgtt |
20553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 20078 - 20184
Alignment:
| Q |
1 |
gatgtttgcaacatcaattgggttaaaagactaaaatgaatcttaatttaaggctattgtttttgcagtttaattgtccgttcaacagaaaatattggtt |
100 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| |||||||||| | |||||||| |||||||||||||| || || ||| ||||| | ||||||||||| |
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| T |
20078 |
gatgtttgtgacatcaattggtttaaaagactcaaatgaatctgagtttaaggcaattgtttttgcagtctagttttcctttcaa-aataaatattggtt |
20176 |
T |
|
| Q |
101 |
gaaaggtt |
108 |
Q |
| |
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|||||||| |
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| T |
20177 |
gaaaggtt |
20184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 147 - 257
Target Start/End: Original strand, 20295 - 20405
Alignment:
| Q |
147 |
aaggaagcgaatcaaatagccaacttgttagcaaaagtatgatcacaaatggatggcaacagaatatccaggcgtctatgtagataatgcagttctgccg |
246 |
Q |
| |
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|||||||| ||||||||| || ||| ||||| ||||||| ||| || || |||||||| |||||||| ||| || |||| |||||||||| ||||||| |
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| T |
20295 |
aaggaagctaatcaaataaccgactcgttagtaaaagtaggattacgaactgatggcaatagaatatctaggtttcaatgtggataatgcaggtctgccg |
20394 |
T |
|
| Q |
247 |
agttctatttt |
257 |
Q |
| |
|
|||||| |||| |
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|
| T |
20395 |
agttctgtttt |
20405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 377
Target Start/End: Original strand, 12857383 - 12857464
Alignment:
| Q |
296 |
gggatttttccttctggtggtcctatgcagtttgctggctgcagcatagttggtgttgatatttttgcatctgtcatgtgtt |
377 |
Q |
| |
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||||||||||||||| ||||||||||||| ||||||| | ||||||||||||| ||||||||||| ||| ||||||||||| |
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|
| T |
12857383 |
gggatttttccttctagtggtcctatgcaatttgctgacagcagcatagttggagttgatattttgtcatatgtcatgtgtt |
12857464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 377
Target Start/End: Complemental strand, 20256510 - 20256451
Alignment:
| Q |
318 |
ctatgcagtttgctggctgcagcatagttggtgttgatatttttgcatctgtcatgtgtt |
377 |
Q |
| |
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|||||||||||| |||||||| ||||||||| ||||||||||| ||||||||||||||| |
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| T |
20256510 |
ctatgcagtttgttggctgcaacatagttggagttgatattttgtcatctgtcatgtgtt |
20256451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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