View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17676_low_14 (Length: 394)

Name: NF17676_low_14
Description: NF17676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17676_low_14
NF17676_low_14
[»] chr8 (3 HSPs)
chr8 (13-342)||(17008503-17008832)
chr8 (13-342)||(17540118-17540447)
chr8 (127-342)||(17535900-17536115)
[»] chr7 (2 HSPs)
chr7 (13-342)||(45829052-45829381)
chr7 (126-342)||(45824833-45825049)
[»] chr3 (1 HSPs)
chr3 (346-379)||(41206713-41206746)
[»] chr6 (1 HSPs)
chr6 (127-155)||(30246500-30246528)


Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 13 - 342
Target Start/End: Complemental strand, 17008832 - 17008503
Alignment:
Q  13 aaaattgctgttttcagaagtcattgaaagaggaaagagaaaactcttgctgctgcaagaatgaaagctgcggctttttcaaatcaggccccagtatgga 112  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17008832 aaaactgctgttttcagaagtcattgaaagaggaaagagaaaactcttgctgctgcaagaatgaaagctgcggctttttcaaatcaggccccagtaggga 17008733  T
Q  113 gctctgataccaattgttattaagcttttactgcagaattggaatttggtttactgacttgaaatgtaattaaatacaagaggaagtaactgaaagttag 212  Q
    |||||| |||||||||||||||||||||||||| |||||||||   ||||||| ||||||||||||||||||||||||||||||||||||| |||| |||    
T  17008732 gctctgttaccaattgttattaagcttttactgtagaattggatactggtttattgacttgaaatgtaattaaatacaagaggaagtaactaaaagctag 17008633  T
Q  213 aaaataaaggaaccactaatcccacgtttaacaattcctaataacatgggattctcctaaggaataagtaaaagcaacagtattccttacaagtaggaat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17008632 aaaataaaggaaccactaatcccacgtttaacaattcctaataacatgggattctcctaaggaataagtaaaagcaacagtattccttacaagtaggaat 17008533  T
Q  313 ttattaaggaaacaaactactaaaaactca 342  Q
    ||||||||||||||||||||||||||||||    
T  17008532 ttattaaggaaacaaactactaaaaactca 17008503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 13 - 342
Target Start/End: Original strand, 17540118 - 17540447
Alignment:
Q  13 aaaattgctgttttcagaagtcattgaaagaggaaagagaaaactcttgctgctgcaagaatgaaagctgcggctttttcaaatcaggccccagtatgga 112  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17540118 aaaactgctgttttcagaagtcattgaaagaggaaagagaaaactcttgctgctgcaagaatgaaagctgcggctttttcaaatcaggccccagtaggga 17540217  T
Q  113 gctctgataccaattgttattaagcttttactgcagaattggaatttggtttactgacttgaaatgtaattaaatacaagaggaagtaactgaaagttag 212  Q
    |||||| |||||||||||||||||||||||||| |||||||||   ||||||| ||||||||||||||||||||||||||||||||||||| |||| |||    
T  17540218 gctctgttaccaattgttattaagcttttactgtagaattggatactggtttattgacttgaaatgtaattaaatacaagaggaagtaactaaaagctag 17540317  T
Q  213 aaaataaaggaaccactaatcccacgtttaacaattcctaataacatgggattctcctaaggaataagtaaaagcaacagtattccttacaagtaggaat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17540318 aaaataaaggaaccactaatcccacgtttaacaattcctaataacatgggattctcctaaggaataagtaaaagcaacagtattccttacaagtaggaat 17540417  T
Q  313 ttattaaggaaacaaactactaaaaactca 342  Q
    ||||||||||||||||||||||||||||||    
T  17540418 ttattaaggaaacaaactactaaaaactca 17540447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 127 - 342
Target Start/End: Original strand, 17535900 - 17536115
Alignment:
Q  127 tgttattaagcttttactgcagaattggaatttggtttactgacttgaaatgtaattaaatacaagaggaagtaactgaaagttagaaaataaaggaacc 226  Q
    ||||||||||||||||||| |||||||||   ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17535900 tgttattaagcttttactgtagaattggatactggtttattgacttgaaatgtaattaaatacaagaggaagtaactgaaagctagaaaataaaggaacc 17535999  T
Q  227 actaatcccacgtttaacaattcctaataacatgggattctcctaaggaataagtaaaagcaacagtattccttacaagtaggaatttattaaggaaaca 326  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17536000 actaatcccacgtttaacaattcctaataacatgggattcttctaaggaataagtaaaagcaacagtattccttacaagtaggaatttattaaggaaaca 17536099  T
Q  327 aactactaaaaactca 342  Q
    ||||||||||||||||    
T  17536100 aactactaaaaactca 17536115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 13 - 342
Target Start/End: Original strand, 45829052 - 45829381
Alignment:
Q  13 aaaattgctgttttcagaagtcattgaaagaggaaagagaaaactcttgctgctgcaagaatgaaagctgcggctttttcaaatcaggccccagtatgga 112  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  45829052 aaaactgctgttttcagaagtcattgaaagaggaaagagaaaactcttgctgctgcaagaatgaaagctgcggctttttcaaatcaggccccagtaggga 45829151  T
Q  113 gctctgataccaattgttattaagcttttactgcagaattggaatttggtttactgacttgaaatgtaattaaatacaagaggaagtaactgaaagttag 212  Q
    ||||||||||||||||||||||||||||||||| |||||||||   ||||| | |||||||||||||||||||||||||||||||||||||||||| |||    
T  45829152 gctctgataccaattgttattaagcttttactgtagaattggatactggttaattgacttgaaatgtaattaaatacaagaggaagtaactgaaagctag 45829251  T
Q  213 aaaataaaggaaccactaatcccacgtttaacaattcctaataacatgggattctcctaaggaataagtaaaagcaacagtattccttacaagtaggaat 312  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45829252 aaaataaaggaaccactaatcccacgtttgacaattcctaataacatgggattctcctaaggaataagtaaaagcaacagtattccttacaagtaggaat 45829351  T
Q  313 ttattaaggaaacaaactactaaaaactca 342  Q
    ||||||||||||||||||||||||||||||    
T  45829352 ttattaaggaaacaaactactaaaaactca 45829381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 126 - 342
Target Start/End: Original strand, 45824833 - 45825049
Alignment:
Q  126 ttgttattaagcttttactgcagaattggaatttggtttactgacttgaaatgtaattaaatacaagaggaagtaactgaaagttagaaaataaaggaac 225  Q
    |||||||||||||||||||| |||||||||   ||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45824833 ttgttattaagcttttactgtagaattggatactggttaattgacttgaaatgtaattaaatacaagaggaagtaactgaaagctagaaaataaaggaac 45824932  T
Q  226 cactaatcccacgtttaacaattcctaataacatgggattctcctaaggaataagtaaaagcaacagtattccttacaagtaggaatttattaaggaaac 325  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45824933 cactaatcccacgtttgacaattcctaataacatgggattctcctaaggaataagtaaaagcaacagtattccttacaagtaggaatttattaaggaaac 45825032  T
Q  326 aaactactaaaaactca 342  Q
    |||||||||||||||||    
T  45825033 aaactactaaaaactca 45825049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 346 - 379
Target Start/End: Complemental strand, 41206746 - 41206713
Alignment:
Q  346 tgaactccttatcaactgagttaatatttatttg 379  Q
    ||||||||||||||||||||||||||||||||||    
T  41206746 tgaactccttatcaactgagttaatatttatttg 41206713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 155
Target Start/End: Original strand, 30246500 - 30246528
Alignment:
Q  127 tgttattaagcttttactgcagaattgga 155  Q
    |||||||||||||||||||||||||||||    
T  30246500 tgttattaagcttttactgcagaattgga 30246528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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