View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17676_low_17 (Length: 365)
Name: NF17676_low_17
Description: NF17676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17676_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 36589514 - 36589181
Alignment:
| Q |
19 |
gccttagctcaaatgagttcatgagctacccaaatccactggaactataatacaattcagatatgcacttttaatggaataccatccatcttttctaaac |
118 |
Q |
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| T |
36589514 |
gccttagctcaaatgagttcatgagctacccaaatccactggaactataatacaattccgatatgcgcttttaatggaataccatccatcttttctaaac |
36589415 |
T |
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| Q |
119 |
cgccgaattattttatcgtgaataatcgaatcaaccataggagtttgaagaattttattagaagcattaccgtcaacaatgtgatgaactaaagcttcac |
218 |
Q |
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|||| |||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36589414 |
cgccaaattattttatcgtaaataatcgaatcaaacataggagttggaagaattttattagaagcattaccgtcaacaatgtgatgaactaaagcttcac |
36589315 |
T |
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| Q |
219 |
tccatcttctctcattactcatgaacaaatctgctactatcaagctctataaaactgggtccagatgacaaggtcgacatattgatgaaccatcaagcaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
36589314 |
tccatcttctctcattactcatgaacaaatctgctactatcaagctctataaaactgggtccagacgaaaaggtcgacatattgatgaaccatcaagcaa |
36589215 |
T |
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| Q |
319 |
ccaatcaccattccaaactgaaatgttatgcccta |
353 |
Q |
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|||||||||||||| |||| ||||||||||||||| |
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| T |
36589214 |
ccaatcaccattcc-aactaaaatgttatgcccta |
36589181 |
T |
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