View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17676_low_21 (Length: 343)
Name: NF17676_low_21
Description: NF17676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17676_low_21 |
 | |
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| [»] scaffold0011 (1 HSPs) |
| | |
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| [»] scaffold0142 (1 HSPs) |
| | |
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| [»] scaffold0039 (1 HSPs) |
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| [»] scaffold0059 (1 HSPs) |
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| [»] scaffold0056 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 12 - 324
Target Start/End: Original strand, 8992288 - 8992589
Alignment:
| Q |
12 |
aatatattcactgatgtcaccaacaaattttgtgaacttagggatttttcattccctataaagttcagtttgtaaaacatattatgacaaggctgaaaca |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8992288 |
aatatattcactgatgtcaccaacaaattttgtgaacttagggattttccattccctagaaagttcagtttgtaaaacatataatgacaaggctgaaaca |
8992387 |
T |
|
| Q |
112 |
aagttaggcctatgcaagcctaaattaaggctattttgagccataatggtttcgaccaaattggttatgttattatgtcctcctaaattgttttgttgga |
211 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
8992388 |
aagttaggcctatgcaggcctaaattaaggctattttgagccagaatggttttgaccaaattggctatgttattatgtcctcctaaattgttttgttgga |
8992487 |
T |
|
| Q |
212 |
catctctaactacaacatcggcaaccaggcccttattcaccaaagtcacttgagggtttttaacaccttccacttgggctacaggtttgactggatgaac |
311 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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|
| T |
8992488 |
catctctaactacaacatcagcaaccaggcc-----------aagtcacttgagggtttttaacaccttccacttgggttacaggtttgactggatgagc |
8992576 |
T |
|
| Q |
312 |
ttggggtgcaggc |
324 |
Q |
| |
|
|| |||||||||| |
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|
| T |
8992577 |
tttgggtgcaggc |
8992589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 149
Target Start/End: Original strand, 21411164 - 21411276
Alignment:
| Q |
37 |
aattttgtgaacttagggatttttcattccctataaagttcagtttgtaaaacatattatgacaaggctgaaacaaagttaggcctatgcaagcctaaat |
136 |
Q |
| |
|
|||||||||||||| |||||||| ||| | || || |||||||||||| ||| ||| ||||||||||| |||||||| || ||||| ||||| | || |
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|
| T |
21411164 |
aattttgtgaacttggggattttccatcacataggaaattcagtttgtaatacaaattcagacaaggctgacacaaagtttggtctatgtaagcccacat |
21411263 |
T |
|
| Q |
137 |
taaggctattttg |
149 |
Q |
| |
|
||||| |||||| |
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|
| T |
21411264 |
caaggccattttg |
21411276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 61612 - 61415
Alignment:
| Q |
17 |
attcactgatgtcaccaacaaattttgtgaacttagggatttttcattccctataaagttcagtttgtaaaacatattatgacaaggctgaaacaaagtt |
116 |
Q |
| |
|
|||||||||| |||||| |||| || ||||||| || ||||| || | |||| |||||||||||||||||||||||| ||| | ||| |||||||||| |
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|
| T |
61612 |
attcactgatatcaccagcaaacttaatgaacttgggaattttccaattcctagaaagttcagtttgtaaaacatattctgaaagggcataaacaaagtt |
61513 |
T |
|
| Q |
117 |
aggcctatgcaagcctaaattaaggctattttgagccataatggtttcgaccaaattggttatgttattatgtcctcctaaattgttttgttggacat |
214 |
Q |
| |
|
|||||||| || |||| ||||| |||||||||||||| ||||||| |||| |||| ||||||| ||||| || | || || | ||||||||||| |
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|
| T |
61512 |
tggcctatgtaaacctatgttaagtctattttgagccatgatggtttgaaccagattgactatgttactatgtgcttccaagttttgttgttggacat |
61415 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 17741722 - 17741550
Alignment:
| Q |
17 |
attcactgatgtcaccaacaaattttgtgaacttagggatttttcattccctataaagttcagtttgtaaaacatattatgacaaggctgaaacaaagtt |
116 |
Q |
| |
|
|||||||| | || ||||||||| ||| ||||||||| ||||| || |||| |||||||||||||||||||||||||||||| | || |||||||| |
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|
| T |
17741722 |
attcactggtatccccaacaaatattgcgaacttaggaattttacaacccctgggaagttcagtttgtaaaacatattatgacaaaggagatacaaagtt |
17741623 |
T |
|
| Q |
117 |
aggcctatgcaagcctaaattaaggctattttgagccataatggtttcgaccaaattggttatgttattatgt |
189 |
Q |
| |
|
|||||||| || |||| || | || ||| ||||||||||| | |||||||||||| |||||||||||||| |
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|
| T |
17741622 |
tggcctatgtaaacctatgtttaagccattatgagccataatattctcgaccaaattgattatgttattatgt |
17741550 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 221
Target Start/End: Complemental strand, 24986176 - 24986061
Alignment:
| Q |
106 |
gaaacaaagttaggcctatgcaagcctaaattaaggctattttgagccataatggtttcgaccaaattggttatgttattatgtcctcctaaattgtttt |
205 |
Q |
| |
|
|||||||| || |||||||||| ||| | ||| | | |||||||||||| || ||||||||||||||| ||| || |||||| |||||| || | || |
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|
| T |
24986176 |
gaaacaaattttggcctatgcaggccaatatttaaaccattttgagccattatattttcgaccaaattggctatattgttatgtactcctatgttttgtt |
24986077 |
T |
|
| Q |
206 |
gttggacatctctaac |
221 |
Q |
| |
|
||||||||| |||||| |
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|
| T |
24986076 |
gttggacatttctaac |
24986061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 71 - 214
Target Start/End: Complemental strand, 24156427 - 24156284
Alignment:
| Q |
71 |
aaagttcagtttgtaaaacatattatgacaaggctgaaacaaagttaggcctatgcaagcctaaattaaggctattttgagccataatggtttcgaccaa |
170 |
Q |
| |
|
|||||||| ||||||||||||| | | |||| | ||||||||||| |||||||| || |||| ||| ||| |||||||| |||||||||||||||||| |
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|
| T |
24156427 |
aaagttcaatttgtaaaacatactctaacaaaggggaaacaaagtttggcctatgtaaccctatatttaggtcattttgagtcataatggtttcgaccaa |
24156328 |
T |
|
| Q |
171 |
attggttatgttattatgtcctcctaaattgttttgttggacat |
214 |
Q |
| |
|
||||| ||||||||| ||| | || || || | ||||||||||| |
|
|
| T |
24156327 |
attggctatgttattgtgtgcccccaagttttgttgttggacat |
24156284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 28 - 214
Target Start/End: Complemental strand, 27234045 - 27233857
Alignment:
| Q |
28 |
tcaccaacaaattttgtgaacttagggatttttcattccctataaagttcagtttgtaaaacatattatgacaaggctgaaacaaagttaggcctatgca |
127 |
Q |
| |
|
|||||| |||| ||||||||||||||||||| || || | ||| |||||||||||||||| | |||||| | ||||||||||| |||||||| | |
|
|
| T |
27234045 |
tcaccatcaaacgttgtgaacttagggattttccaacccttgggaagctcagtttgtaaaacatgctctgacaaaggagaaacaaagtttggcctatgta |
27233946 |
T |
|
| Q |
128 |
agcctaaattaaggctattttgagccataatggtttcgacc--aaattggttatgttattatgtcctcctaaattgttttgttggacat |
214 |
Q |
| |
|
| |||| ||| || |||||||||||||||| |||||||| ||||| | ||||||||||||| | || || || | ||||||||||| |
|
|
| T |
27233945 |
accctatatttagagaattttgagccataatgatttcgaccaaaaattagctatgttattatgtgccccaaagttttgttgttggacat |
27233857 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 16909303 - 16909480
Alignment:
| Q |
17 |
attcactgatgtcaccaacaaattttgtgaacttagggatttttcattccctataaagttcagtttgtaaaacatattatgacaaggctgaaacaaagtt |
116 |
Q |
| |
|
|||||||| | |||||| ||||| ||||||||||||| ||||| || ||||| ||||||||||||||| ||||||| ||||| | || |||||||| |
|
|
| T |
16909303 |
attcactggtatcaccagcaaatgttgtgaacttaggaattttacaacccctaagaagttcagtttgtaatacatattctgacagaggagatacaaagtt |
16909402 |
T |
|
| Q |
117 |
aggcctatgcaagcctaaattaaggctattttgagccataatggtttcgaccaaattggttatgttattatgtcctcc |
194 |
Q |
| |
|
|||||||| || || || | | | ||||||||||| || |||| |||||||||| ||| ||||||||| |||| |
|
|
| T |
16909403 |
tggcctatgtaaacccgtgtttaagttcttttgagccatgatattttcaaccaaattggctatattattatgtgctcc |
16909480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 10234623 - 10234726
Alignment:
| Q |
72 |
aagttcagtttgtaaaacatattatgacaaggctgaaacaaagttaggcctatgcaagcctaaattaaggctattttgagccataatggtttcgaccaaa |
171 |
Q |
| |
|
||||| |||||| || ||||||| ||| | | |||||||||||||| |||||| || |||| || |||| ||||||||| |||||||||| ||||||| |
|
|
| T |
10234623 |
aagtttagtttgcaagacatattctgaaagaggtgaaacaaagttagccctatgtaaacctatgttcaggccattttgagcaataatggtttagaccaaa |
10234722 |
T |
|
| Q |
172 |
ttgg |
175 |
Q |
| |
|
|||| |
|
|
| T |
10234723 |
ttgg |
10234726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 19219692 - 19219488
Alignment:
| Q |
17 |
attcactgatgtcaccaacaaattttgtgaacttagggatttttcattccctataaagttcagtttgtaaaacatattatgacaaggctgaaacaaagtt |
116 |
Q |
| |
|
|||| ||| ||||||||||||| || |||||||||| || || | ||||| |||||||||||||| |||||||| ||| || | | |||||||| |
|
|
| T |
19219692 |
attcgctggtgtcaccaacaaaccttctgaacttaggaatcttataacccctaagaagttcagtttgtagaacatattctgataaaggatatacaaagtt |
19219593 |
T |
|
| Q |
117 |
aggcctatgcaagcctaaattaaggctattttgagccataatggtttcgaccaaattggttatgttattatgtcctcctaaattgttttgttggacatct |
216 |
Q |
| |
|
|||||||| || || | || | || ||| |||||||| || |||| |||||||||| |||||||||| || |||| | ||| | |||||||| || | |
|
|
| T |
19219592 |
tggcctatgtaaacccacgtttaagccattctgagccatgatattttcaaccaaattggctatgttattacgtgctccgatattttgttgttggatattt |
19219493 |
T |
|
| Q |
217 |
ctaac |
221 |
Q |
| |
|
||||| |
|
|
| T |
19219492 |
ctaac |
19219488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0142 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0142
Description:
Target: scaffold0142; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 19282 - 19378
Alignment:
| Q |
28 |
tcaccaacaaattttgtgaacttagggatttttcattccctataaagttcagtttgtaaaacatattatgacaaggctgaaacaaagttaggcctat |
124 |
Q |
| |
|
|||||| ||||| ||||||||||||| |||| | ||||| ||||||||||||||||||||||| |||||| || | |||||||| ||||||| |
|
|
| T |
19282 |
tcaccagcaaatgttgtgaacttaggaatttcagaacccctaggaagttcagtttgtaaaacatattctgacaaagcaaatacaaagtttggcctat |
19378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 47698 - 47614
Alignment:
| Q |
17 |
attcactgatgtcaccaacaaattttgtgaacttagggatttttcattccctataaagttcagtttgtaaaacatattatgacaa |
101 |
Q |
| |
|
|||||||| | |||||| |||| |||||||||||||| ||||| || |||| | ||||||||||||||||||||| |||||| |
|
|
| T |
47698 |
attcactggtatcaccagcaaactttgtgaacttaggaattttccaacccctgggatgttcagtttgtaaaacatattctgacaa |
47614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 36821 - 36911
Alignment:
| Q |
106 |
gaaacaaagttaggcctatgcaagcctaaattaaggctattttgagccataatggtttcgaccaaattggttatgttattatgtcctccta |
196 |
Q |
| |
|
||||||||||| |||||||||||||| | ||| | | |||||||||||| || | ||||||||||||| ||| || |||||| |||||| |
|
|
| T |
36821 |
gaaacaaagtttggcctatgcaagccaatatttaaaccattttgagccattatattctcgaccaaattggctattttgttatgtgctccta |
36911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0056 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0056
Description:
Target: scaffold0056; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 51210 - 51140
Alignment:
| Q |
144 |
attttgagccataatggtttcgaccaaattggttatgttattatgtcctcctaaattgttttgttggacat |
214 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| ||| || |||||| |||||| || | ||||||||||| |
|
|
| T |
51210 |
attttgagccattatgttttcgaccaaattggctatattgttatgtactcctatgttttgttgttggacat |
51140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0056; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 56311 - 56241
Alignment:
| Q |
144 |
attttgagccataatggtttcgaccaaattggttatgttattatgtcctcctaaattgttttgttggacat |
214 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| ||| || |||||| |||||| || | ||||||||||| |
|
|
| T |
56311 |
attttgagccattatgttttcgaccaaattggctatattgttatgtactcctatgttttgttgttggacat |
56241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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