View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17676_low_24 (Length: 308)
Name: NF17676_low_24
Description: NF17676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17676_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 130 - 268
Target Start/End: Complemental strand, 13417652 - 13417513
Alignment:
| Q |
130 |
agaaaagggaggacatgtcatgtgtcatgcgtatgaggcaaataaaaaagtgtgaaataacgga-tttgggtatgtctctggttaaggataacataaaat |
228 |
Q |
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| T |
13417652 |
agaaaagggaggacatgtcatgtgtcatgcgcatgaggcaaataaaaaagtgtgaaataacggattttgggcatgtctttggttaaggataacataaaat |
13417553 |
T |
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| Q |
229 |
taattatgggaaacaaaagaagtagtgggatatggttata |
268 |
Q |
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| T |
13417552 |
taattatgggaaacaaaggaagtggagggatatggttata |
13417513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 13417750 - 13417678
Alignment:
| Q |
34 |
ctttgatatgcattatactcct---tttgttaagttgggttagtctttgcaatacttgtagcccaacattacac |
104 |
Q |
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| T |
13417750 |
ctttgatatgcattacactcctccttttgttaagttgggttagtctttgc-atacttgtagcccaacattacac |
13417678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 13417491 - 13417453
Alignment:
| Q |
270 |
taaagtttttgtaagttcattttatttaataatgttctt |
308 |
Q |
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| T |
13417491 |
taaagtttatgtaagttcattttatttaataatgttctt |
13417453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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