View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17676_low_26 (Length: 299)
Name: NF17676_low_26
Description: NF17676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17676_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 10 - 285
Target Start/End: Complemental strand, 49954932 - 49954658
Alignment:
| Q |
10 |
agattgaatgattaatctctaacttttgatgggaatactttggatatatattttannnnnnnaaaagtattgctaacaagcgtcttaaaaacatttttaa |
109 |
Q |
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| T |
49954932 |
agattgaatgattaatctctaacttctgacggggatactttggatttatattatttttttaaaaaa-tattgctaacaagcctcttaaaaacatttttaa |
49954834 |
T |
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| Q |
110 |
aggatttttaatgatgaaattattccttnnnnnnnnnnnnnnctccaattttcaaagcattgataacataaacttaccatttaagttcacgaaacaatgt |
209 |
Q |
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| T |
49954833 |
aagatttttaatgatgaaattactccttaaaaaagcaaaaaactccaattttcaaagcattgataacataaacttaccatttaaggtcacgaaacaatgt |
49954734 |
T |
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| Q |
210 |
attgaggacactcattagcttttctcaaaaaaggtatttctttgccattccttactatgatcatttggtttcttaa |
285 |
Q |
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||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
49954733 |
catgagggcactcattagcttttcccaaaaaagatatttctttgccattccttactatgatcatttggtttcttaa |
49954658 |
T |
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