View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17676_low_29 (Length: 271)
Name: NF17676_low_29
Description: NF17676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17676_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 41795612 - 41795379
Alignment:
| Q |
17 |
aggaagatgaagctttcaagagagctagggctccaacctcgccaaattgctgtttggttccaaaataggcgtacaaggtggaaggctaagcagcttgaac |
116 |
Q |
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| T |
41795612 |
aggaagatgaagctttcaagagagctagggctccaacctcgccaaattgctgtttggttccaaaataggcgtacaaggtggaaggctaagcagcttgaac |
41795513 |
T |
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| Q |
117 |
acttgtatgatgttttgaaacaagaatttgatgttgtctccaaggaaaaacagaaacttcaagaagaggtaactaattatctttggattgtttgcataag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41795512 |
acttgtatgatgttttgaaacaagaatttgatgttgtctccaaggaaaaacagaaacttcaagaagaggtaactaattatctttggattgtttgcataag |
41795413 |
T |
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| Q |
217 |
gtaggatgaatttgaatgaaattggaatgagata |
250 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
41795412 |
gtaggatgaatttgaatgaaattggaatgagata |
41795379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 26932222 - 26932332
Alignment:
| Q |
17 |
aggaagatgaagctttcaagagagctagggctccaacctcgccaaattgctgtttggttccaaaataggcgtacaaggtggaaggctaagcagcttgaac |
116 |
Q |
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||||||||||||||||| | ||| ||||||| || ||||| ||||||||| |||||||||||||||| ||| | ||||||||| | ||||| ||||||| |
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| T |
26932222 |
aggaagatgaagctttccaaggagttagggctacagcctcgtcaaattgctatttggttccaaaatagacgtgctaggtggaagaccaagcaacttgaac |
26932321 |
T |
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| Q |
117 |
acttgtatgat |
127 |
Q |
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|||| |||||| |
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| T |
26932322 |
acttatatgat |
26932332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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