View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17676_low_31 (Length: 246)
Name: NF17676_low_31
Description: NF17676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17676_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 50408268 - 50408055
Alignment:
| Q |
19 |
attttggaccaccgtcatctcagccgtagctccttcaacttcaacctgctctgatcggtacctcttgtatatatcacctttataaaacttaattgttctg |
118 |
Q |
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| T |
50408268 |
attttggaccaccgtcatctcagccgtagctccttcaacttcaacctgctctgatcggtacctcttgtatatatcacctttataaaacttatttgttctg |
50408169 |
T |
|
| Q |
119 |
gccactaaaataagtgaaataatggcaccaaacaaagtagctgcagtgataataatgaaagacaatctgaaacaacttgctcctacacaattcaattcct |
218 |
Q |
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| T |
50408168 |
gccactaaaataagtgaaataatggcaccaaacaaagtagctgcagtgataataatgaaagacaatctgaaacaacttgctcctacacaattcaattcct |
50408069 |
T |
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| Q |
219 |
gacccaattttctt |
232 |
Q |
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|||||||||||||| |
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| T |
50408068 |
gacccaattttctt |
50408055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 180
Target Start/End: Complemental strand, 50386178 - 50386078
Alignment:
| Q |
80 |
ctcttgtatatatcacctttataaaacttaattgttctggccactaaaataagtgaaataatggcaccaaacaaagtagctgcagtgataataatgaaag |
179 |
Q |
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| T |
50386178 |
ctcttgtatatgtcacctttgtaaaactttctggtcctagccaccaaaataagtgaaacaacagcaccaaaaaatgttgcagctgtgataataatgaaag |
50386079 |
T |
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| Q |
180 |
a |
180 |
Q |
| |
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| |
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| T |
50386078 |
a |
50386078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 193
Target Start/End: Complemental strand, 50394601 - 50394484
Alignment:
| Q |
76 |
gtacctcttgtatatatcacctttataaaacttaattgttctggccactaaaataagtgaaataatggcaccaaacaaagtagctgcagtgataataatg |
175 |
Q |
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| T |
50394601 |
gtacctcttgtatatgtcacctttgtaaaactttctagtcctagacaccaaaataagtgaaacaacagcaccaaaaaatgttgcagctgtaataataatg |
50394502 |
T |
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| Q |
176 |
aaagacaatctgaaacaa |
193 |
Q |
| |
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||||| || |||||||| |
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| T |
50394501 |
aaagataacttgaaacaa |
50394484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 92 - 232
Target Start/End: Original strand, 41637862 - 41638002
Alignment:
| Q |
92 |
tcacctttataaaacttaattgttctggccactaaaataagtgaaataatggcaccaaacaaagtagctgcagtgataataatgaaagacaatctgaaac |
191 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
41637862 |
tcacgtttataaaacttaattgttctagccactaaaataagtgaaataatggcaccaaacaaagtagctacagtgataataatgaaagacaatttgaaac |
41637961 |
T |
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| Q |
192 |
aacttgctcctacacaattcaattcctgacccaattttctt |
232 |
Q |
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| T |
41637962 |
aacttgctcctgcacaattcaattcctgacccaattttctt |
41638002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 70 - 206
Target Start/End: Original strand, 39628061 - 39628197
Alignment:
| Q |
70 |
tgatcggtacctcttgtatatatcacctttataaaacttaattgttctggccactaaaataagtgaaataatggcaccaaacaaagtagctgcagtgata |
169 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| | || ||||| | |||||||||| |||||||||| |||||||||||||| |
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| T |
39628061 |
tgatcggtacctcttgtatatatcacgtttataaaacttaattgttctagtcaacaaaattactgaaataatgacaccaaacaagttagctgcagtgata |
39628160 |
T |
|
| Q |
170 |
ataatgaaagacaatctgaaacaacttgctcctacac |
206 |
Q |
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|||||||||||| |||||||||||||||| |||| |
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| T |
39628161 |
gacatgaaagacaatttgaaacaacttgctcccacac |
39628197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 41637758 - 41637847
Alignment:
| Q |
19 |
attttggaccaccgtcatctcagccgtagctccttcaacttcaacctgctctgatcggtacctcttgtatatatcacctttataaaactt |
108 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41637758 |
attttggaccaccgtcatctcatccgaagctccttcaacttctacctgctctgatcggtacctcttgtatatatcacgtttataaaactt |
41637847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 113 - 212
Target Start/End: Complemental strand, 41638221 - 41638119
Alignment:
| Q |
113 |
gttctggccactaaaataagtgaaataatggcaccaaacaaagtagctgcag---tgataataatgaaagacaatctgaaacaacttgctcctacacaat |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||| ||||||||| || ||||||||||| |
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| T |
41638221 |
gttctggccactaaaataagtgaaataatggcaccaaacaaagtagccagagtgatgatgataatgaaagacaatttgaaacaacgtgttcctacacaat |
41638122 |
T |
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| Q |
210 |
tca |
212 |
Q |
| |
|
||| |
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| T |
41638121 |
tca |
41638119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 41638695 - 41638631
Alignment:
| Q |
42 |
ccgtagctccttcaacttcaacctgctctgatcggtacctcttgtatatatcacctttataaaac |
106 |
Q |
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| T |
41638695 |
ccgtagctccttcaacttctacctgctctgaccggtacctcttgtatatatcacgtttataaaac |
41638631 |
T |
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