View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17676_low_32 (Length: 236)
Name: NF17676_low_32
Description: NF17676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17676_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 81 - 220
Target Start/End: Original strand, 47927076 - 47927215
Alignment:
| Q |
81 |
cagactaagaaatcatttgactaaacaccccagagatgtctacagaataaattttatcggtgcgggaggagacacccacattttcaaataattgacatta |
180 |
Q |
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| T |
47927076 |
cagactaagaaatcatttgactaaacaccccagagatgtctacagaataaattttatcggtgcgggaggagacacccacattttcaaataatcaacatta |
47927175 |
T |
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| Q |
181 |
gtaacattaaatttagccaaccaatcaacacatttgttac |
220 |
Q |
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| T |
47927176 |
gtaacattaaatttagccaaccaatcaacacatttgttac |
47927215 |
T |
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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 47927005 - 47927049
Alignment:
| Q |
10 |
taggcttgcattcccacattttcggacaaagttttttagtttatt |
54 |
Q |
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| T |
47927005 |
taggcttgcattcccacattttcggacaaagttttttagtttatt |
47927049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 34353627 - 34353556
Alignment:
| Q |
144 |
gggaggagacacccacattttcaaataatt-gacattagtaacattaaatttagccaaccaatcaacacatt |
214 |
Q |
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| T |
34353627 |
gggaggagaaatccacattttcaaaaaaatcgacattaataatattaaatttagccaatcaatcaatacatt |
34353556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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