View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17676_low_33 (Length: 234)
Name: NF17676_low_33
Description: NF17676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17676_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 887372 - 887176
Alignment:
| Q |
16 |
caaaggtagcttaataaaaaggtgctcaccgacagttttatataatgtttaactagtaattcaaacttcacattgtttttgttgtttgtgatgctcaata |
115 |
Q |
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| T |
887372 |
caaaggtagcttcacaaaaaggtgctcaccgagagggttatataatgttcaacttgtaattcaaacttcacattgtt------gtttgtgatgctcaata |
887279 |
T |
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| Q |
116 |
ttataggcttcaaataatctttgctcacttggtctatagactgaaatatcttacccgtccaacaaattagatcgtcttcctcagcttgtttaaacgttcc |
215 |
Q |
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| T |
887278 |
ttataggcttcaaataatctttgctcacttggtctatagactgaaatatcttacccgtccaacaaattagatcgtcttcctcagcttttttaaacgttcc |
887179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 156
Target Start/End: Original strand, 31875053 - 31875100
Alignment:
| Q |
109 |
ctcaatattataggcttcaaataatctttgctcacttggtctatagac |
156 |
Q |
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| T |
31875053 |
ctcattattataggcttcaaatagtctttgctcacttcgtctatagac |
31875100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 31881544 - 31881595
Alignment:
| Q |
111 |
caatattataggcttcaaataatctttgctcacttggtctatagactgaaat |
162 |
Q |
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| T |
31881544 |
caatatcataggcttcaaataccctttgctcacttcgtctatagacttaaat |
31881595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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